Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G19661 Trifolium pratense HOM05D005608 ORTHO05D007543 2.2e-102 375.6 177 100.0
TPR.G19657 Trifolium pratense HOM05D005608 ORTHO05D007543 3.4e-95 351.7 168 98.2
Medtr4g008660 Medicago truncatula HOM05D005608 ORTHO05D007543 2.6e-87 325.5 168 89.9
Medtr1g052175 Medicago truncatula HOM05D005608 ORTHO05D007543 9.8e-87 323.6 168 89.3
Psat6g091560 Pisum sativum HOM05D005608 ORTHO05D007543 1.3e-86 323.2 170 89.4
Lj5g0018305 Lotus japonicus HOM05D005608 ORTHO05D007543 5.9e-84 314.3 166 86.1
CSS0026365 Camellia sinensis var. sinensis HOM05D005608 ORTHO05D007543 2.5e-82 308.9 167 85.0
QL07p003736 Quercus lobata HOM05D005608 ORTHO05D007543 3.3e-82 308.5 167 86.2
Ciclev10005572m.g Citrus clementina HOM05D005608 ORTHO05D007543 5.5e-82 307.8 167 86.2
PGSC0003DMG401012699 Solanum tuberosum HOM05D005608 ORTHO05D007543 2.1e-81 305.8 167 85.6
arahy.Tifrunner.gnm1.ann1.RCN63F Arachis hypogaea HOM05D005608 ORTHO05D007543 2.8e-81 305.4 167 84.4
CANSAT80G2626 Cannabis sativa HOM05D005608 ORTHO05D007543 2.8e-81 305.4 167 85.6
Ca_12257_v3 Cicer arietinum L. HOM05D005608 ORTHO05D007543 2.8e-81 305.4 164 86.0
Manes.08G052000 Manihot esculenta HOM05D005608 ORTHO05D007543 2.8e-81 305.4 167 85.0
Migut.J01725 Erythranthe guttata HOM05D005608 ORTHO05D007543 3.6e-81 305.1 174 82.8
Gohir.D01G184100 Gossypium hirsutum HOM05D005608 ORTHO05D007543 3.6e-81 305.1 167 85.0
Gorai.002G227600 Gossypium raimondii HOM05D005608 ORTHO05D007543 3.6e-81 305.1 167 85.0
Solyc04g016360.3 Solanum lycopersicum HOM05D005608 ORTHO05D007543 3.6e-81 305.1 167 85.6
CAN.G676.7 Capsicum annuum HOM05D005608 ORTHO05D007543 4.7e-81 304.7 167 85.0
Ca_12243_v3 Cicer arietinum L. HOM05D005608 ORTHO05D007543 4.7e-81 304.7 168 83.9
Nitab4.5_0001618g0150 Nicotiana tabacum HOM05D005608 ORTHO05D007543 4.7e-81 304.7 167 85.0
Lalb_Chr06g0173501 Lupinus albus HOM05D005608 ORTHO05D007543 6.1e-81 304.3 166 86.1
Prupe.7G053400 Prunus persica HOM05D005608 ORTHO05D007543 6.1e-81 304.3 167 83.2
MSTRG.19838 Avicennia marina HOM05D005608 ORTHO05D007543 8.0e-81 303.9 167 85.6
Phvul.007G250500 Phaseolus vulgaris HOM05D005608 ORTHO05D007543 8.0e-81 303.9 167 83.2
Eucgr.K02019 Eucalyptus grandis HOM05D005608 ORTHO05D007543 1.0e-80 303.5 167 83.8
Hma1.2p1_0110F.1_g052840 Hydrangea macrophylla HOM05D005608 ORTHO05D007543 1.0e-80 303.5 167 83.2
Hma1.2p1_1997F.1_g310445 Hydrangea macrophylla HOM05D005608 ORTHO05D007543 1.0e-80 303.5 167 83.2
Atru.chr1.1230 Acer truncatum HOM05D005608 ORTHO05D007543 1.4e-80 303.1 167 84.4
CANSAT80G0897 Cannabis sativa HOM05D005608 ORTHO05D007543 1.4e-80 303.1 167 85.0
Dinv39657 Davidia involucrata HOM05D005608 ORTHO05D007543 1.4e-80 303.1 167 84.4
Glyma.02G186700 Glycine max HOM05D005608 ORTHO05D007543 1.4e-80 303.1 167 85.0
FAN05G0975 Fragaria x ananassa HOM05D005608 ORTHO05D007543 1.8e-80 302.8 167 82.6
Nitab4.5_0000826g0060 Nicotiana tabacum HOM05D005608 ORTHO05D007543 1.8e-80 302.8 167 84.4
Gohir.A01G193800 Gossypium hirsutum HOM05D005608 ORTHO05D007543 2.3e-80 302.4 167 84.4
VMungo0720G2960 Vigna mungo HOM05D005608 ORTHO05D007543 2.3e-80 302.4 167 83.2
Sopen04g008450 Solanum pennellii HOM05D005608 ORTHO05D007543 3.0e-80 302.0 167 84.4
EL10Ac3g07137 Beta vulgaris HOM05D005608 ORTHO05D007543 4.0e-80 301.6 167 83.8
Thecc.05G148100 Theobroma cacao HOM05D005608 ORTHO05D007543 4.0e-80 301.6 167 83.8
Sabra06G0032700 Salix brachista HOM05D005608 ORTHO05D007543 5.2e-80 301.2 167 83.8
Sed0023334 Sechium edule HOM05D005608 ORTHO05D007543 5.2e-80 301.2 167 83.2
CiPaw.09G040300 Carya illinoinensis HOM05D005608 ORTHO05D007543 6.8e-80 300.8 167 84.4
Oeu017928.1 Olea europaea HOM05D005608 ORTHO05D007543 6.8e-80 300.8 167 84.4
MSTRG.26133 Avicennia marina HOM05D005608 ORTHO05D007543 8.9e-80 300.4 167 82.0
ClCG04G003700 Citrullus lanatus HOM05D005608 ORTHO05D007543 1.2e-79 300.1 167 83.8
Peaxi162Scf00130g00829 Petunia axillaris HOM05D005608 ORTHO05D007543 1.2e-79 300.1 167 83.2
TWI77G0221 Tripterygium wilfordii HOM05D005608 ORTHO05D007543 1.2e-79 300.1 166 82.5
Duzib106G2070 Durio zibethinus HOM05D005608 ORTHO05D007543 1.5e-79 299.7 167 84.4
Lj1A1125T63 Lonicera japonica HOM05D005608 ORTHO05D007543 1.5e-79 299.7 167 82.6
Potri.006G047000 Populus trichocarpa HOM05D005608 ORTHO05D007543 1.5e-79 299.7 167 83.2
Cpa.g.sc182.15 Carica papaya HOM05D005608 ORTHO05D007543 2.0e-79 299.3 166 83.7
CsaV3_4G027510 Cucumis sativus L. HOM05D005608 ORTHO05D007543 2.0e-79 299.3 167 83.2
Glyma.10G106900 Glycine max HOM05D005608 ORTHO05D007543 2.0e-79 299.3 167 83.8
RcHm_v2.0_Chr3g0483631 Rosa chinensis HOM05D005608 ORTHO05D007543 2.0e-79 299.3 167 82.6
PSO384G3225 Papaver somniferum HOM05D005608 ORTHO05D007543 2.6e-79 298.9 167 83.8
Rhsim03G0028900 Rhododendron simsii HOM05D005608 ORTHO05D007543 2.6e-79 298.9 166 83.7
Hund24681 Selenicereus undatus HOM05D005608 ORTHO05D007543 2.6e-79 298.9 168 82.7
vmacro21968 Vaccinium macrocarpon HOM05D005608 ORTHO05D007543 2.6e-79 298.9 166 82.5
Actinidia39202 Actinidia chinensis HOM05D005608 ORTHO05D007543 3.4e-79 298.5 167 83.2
MELO3C026333.2 Cucumis melo HOM05D005608 ORTHO05D007543 3.4e-79 298.5 167 83.8
Nn2g15128 Nelumbo nucifera HOM05D005608 ORTHO05D007543 3.4e-79 298.5 167 82.6
Haze_19791 Corylus avellana HOM05D005608 ORTHO05D007543 4.4e-79 298.1 166 83.7
Haze_19795 Corylus avellana HOM05D005608 ORTHO05D007543 4.4e-79 298.1 166 83.7
PSO339G6269 Papaver somniferum HOM05D005608 ORTHO05D007543 4.4e-79 298.1 167 83.8
HPP92_001434 Vanilla planifolia HOM05D005608 ORTHO05D007543 7.5e-79 297.4 166 83.1
TAR369G0194 Trochodendron aralioides HOM05D005608 ORTHO05D007543 9.8e-79 297.0 167 82.6
TAR369G0715 Trochodendron aralioides HOM05D005608 ORTHO05D007543 9.8e-79 297.0 167 82.6
arahy.Tifrunner.gnm1.ann1.QZL5XH Arachis hypogaea HOM05D005608 ORTHO05D007543 1.3e-78 296.6 180 77.2
Cfa016779 Carpinus fangiana HOM05D005608 ORTHO05D007543 1.3e-78 296.6 166 83.7
SalBow6G4364 Salvia bowleyana HOM05D005608 ORTHO05D007543 2.2e-78 295.8 167 82.0
FAN02G1028 Fragaria x ananassa HOM05D005608 ORTHO05D007543 2.8e-78 295.4 167 81.4
Aa31LG1G23580 Aethionema arabicum HOM05D005608 ORTHO05D007543 3.7e-78 295.0 169 81.1
CARHR136660 Cardamine hirsuta HOM05D005608 ORTHO05D007543 4.9e-78 294.7 169 81.1
HanXRQChr04g0125051 Helianthus annuus HOM05D005608 ORTHO05D007543 4.9e-78 294.7 167 82.6
Sc19g0008540 Simmondsia chinensis HOM05D005608 ORTHO05D007543 4.9e-78 294.7 166 82.5
AT2G41530 Arabidopsis thaliana HOM05D005608 ORTHO05D007543 8.3e-78 293.9 169 80.5
Carub.0004s2382 Capsella rubella HOM05D005608 ORTHO05D007543 8.3e-78 293.9 169 79.9
FvH4_6g24520 Fragaria vesca HOM05D005608 ORTHO05D007543 1.4e-77 293.1 167 80.8
Thhalv10017045m.g Eutrema salsugineum HOM05D005608 ORTHO05D007543 1.8e-77 292.7 169 79.3
MD14G1077300 Malus domestica HOM05D005608 ORTHO05D007543 1.8e-77 292.7 167 81.4
AL4G39630 Arabidopsis lyrata HOM05D005608 ORTHO05D007543 2.4e-77 292.4 169 79.9
GSVIVG01033232001 Vitis vinifera HOM05D005608 ORTHO05D007543 2.4e-77 292.4 167 80.2
CDE05G0378 Ceratophyllum demersum HOM05D005608 ORTHO05D007543 3.2e-77 292.0 167 78.4
Aqoxy2G00245 Aquilegia oxysepala HOM05D005608 ORTHO05D007543 5.4e-77 291.2 166 82.5
TAR633G2234 Trochodendron aralioides HOM05D005608 ORTHO05D007543 5.4e-77 291.2 167 80.2
BcaNung04068 Brassica carinata HOM05D005608 ORTHO05D007543 7.0e-77 290.8 169 79.9
A03p23310 Brassica napus HOM05D005608 ORTHO05D007543 9.2e-77 290.4 169 78.7
BraA03t11549Z Brassica rapa HOM05D005608 ORTHO05D007543 9.2e-77 290.4 169 78.7
Sp4g23810 Schrenkiella parvula HOM05D005608 ORTHO05D007543 1.2e-76 290.0 169 78.7
BcaC01g05330 Brassica carinata HOM05D005608 ORTHO05D007543 1.6e-76 289.7 169 78.7
Cc06_g18100 Coffea canephora HOM05D005608 ORTHO05D007543 1.6e-76 289.7 167 82.6
DCAR_013613 Daucus carota HOM05D005608 ORTHO05D007543 1.6e-76 289.7 166 79.5
BcaB01g03463 Brassica carinata HOM05D005608 ORTHO05D007543 3.5e-76 288.5 169 77.5
BolC3t15154H Brassica oleracea HOM05D005608 ORTHO05D007543 3.5e-76 288.5 169 78.7
SGA_v2.0_scaffold273G46432 Striga asiatica HOM05D005608 ORTHO05D007543 4.5e-76 288.1 160 81.2
C03p27830 Brassica napus HOM05D005608 ORTHO05D007543 1.0e-75 287.0 169 78.1
AUR62026096 Chenopodium quinoa HOM05D005608 ORTHO05D007543 1.7e-75 286.2 184 75.0
FAN14G1555 Fragaria x ananassa HOM05D005608 ORTHO05D007543 2.9e-75 285.4 170 78.8
THA.LOC104801987 Tarenaya hassleriana HOM05D005608 ORTHO05D007543 3.9e-75 285.0 169 76.9
ATR0721G011 Amborella trichopoda HOM05D005608 ORTHO05D007543 6.6e-75 284.3 169 78.7
MD12G1082500 Malus domestica HOM05D005608 ORTHO05D007543 6.6e-75 284.3 166 81.3
BraA05t19229Z Brassica rapa HOM05D005608 ORTHO05D007543 8.6e-75 283.9 170 78.8
Sed0008486 Sechium edule HOM05D005608 ORTHO05D007543 1.9e-74 282.7 166 77.7
A05p02350 Brassica napus HOM05D005608 ORTHO05D007543 4.3e-74 281.6 170 78.2
ECA236G2378 Erigeron canadensis HOM05D005608 ORTHO05D007543 7.3e-74 280.8 160 81.2
C04p02790 Brassica napus HOM05D005608 ORTHO05D007543 1.2e-73 280.0 170 77.6
BolC4t21919H Brassica oleracea HOM05D005608 ORTHO05D007543 1.2e-73 280.0 170 77.6
SEGI_13354 Sequoiadendron giganteum HOM05D005608 ORTHO05D007543 3.6e-73 278.5 169 78.1
Zm00001eb363240 Zea mays HOM05D005608 ORTHO05D007543 4.0e-72 275.0 172 72.7
Os01g0939700 Oryza sativa ssp. japonica HOM05D005608 ORTHO05D007543 2.0e-71 272.7 171 71.3
Lsat_1_v5_gn_8_82180 Lactuca sativa HOM05D005608 ORTHO05D007543 4.4e-71 271.6 213 63.4
Sed0024564 Sechium edule HOM05D005608 ORTHO05D007543 2.2e-70 269.2 166 73.5
Nitab4.5_0000636g0050 Nicotiana tabacum HOM05D005608 ORTHO05D007543 2.9e-70 268.9 167 77.2
Peaxi162Scf00130g00828 Petunia axillaris HOM05D005608 ORTHO05D007543 1.4e-69 266.5 167 76.0
Pp3c11_8660 Physcomitrium patens HOM05D005608 ORTHO05D007543 3.2e-69 265.4 166 73.5
SMO174G0027 Selaginella moellendorffii HOM05D005608 ORTHO05D007543 3.0e-67 258.8 166 71.7
Mapoly0020s0136 Marchantia polymorpha HOM05D005608 ORTHO05D007543 3.9e-67 258.5 169 71.0
CBR_g12387 Chara braunii HOM05D005608 ORTHO05D007543 9.5e-66 253.8 166 71.1
COL.COLO4_32782 Corchorus olitorius HOM05D005608 ORTHO05D007543 2.3e-64 249.2 147 80.3
Eucgr.K01713 Eucalyptus grandis HOM05D005608 ORTHO05D007543 2.0e-63 246.1 135 80.7
unitig_21.g20519 Utricularia gibba HOM05D005608 ORTHO05D007543 3.2e-61 238.8 167 72.5
MBI19_g29889_MAGBIO Magnolia biondii HOM05D005608 ORTHO05D007543 5.4e-61 238.0 125 87.2
AUR62024510 Chenopodium quinoa HOM05D005608 ORTHO05D007543 9.2e-61 237.3 121 90.9
Cre03.g158800 Chlamydomonas reinhardtii HOM05D005608 ORTHO05D007543 8.3e-54 214.2 171 60.2
Haze_27232 Corylus avellana HOM05D005608 ORTHO05D007543 5.6e-42 174.9 204 43.6
SalBow6G3992 Salvia bowleyana HOM05D005608 ORTHO05D007543 2.8e-41 172.6 92 83.7
Haze_26706 Corylus avellana HOM05D005608 ORTHO05D007543 1.3e-38 163.7 166 49.4
Medtr0931s0010 Medicago truncatula HOM05D005608 ORTHO05D044358 1.1e-37 160.6 141 55.3
PRCOL_00003320 Prasinoderma coloniale HOM05D000219 ORTHO05D000226 4.3e-34 148.7 169 48.5
MCO09G089 Micromonas commoda HOM05D000219 ORTHO05D000226 4.8e-33 145.2 160 47.5
Zm00001eb010250 Zea mays HOM05D005608 ORTHO05D007543 4.6e-20 102.1 80 60.0
SEGI_35043 Sequoiadendron giganteum HOM05D005608 ORTHO05D384886 5.0e-14 82.0 51 76.5
Zm00001eb141600 Zea mays HOM05D005608 ORTHO05D007543 3.2e-13 79.3 63 57.1
PSO765G0043 Papaver somniferum HOM05D005608 ORTHO05D302623 7.7e-07 58.2 47 68.1


User provided reference genes

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