Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G19657 Trifolium pratense HOM05D005608 ORTHO05D007543 3.8e-173 611.3 286 100.0
Medtr1g052175 Medicago truncatula HOM05D005608 ORTHO05D007543 3.6e-155 551.6 279 92.1
Medtr4g008660 Medicago truncatula HOM05D005608 ORTHO05D007543 2.2e-152 542.3 280 90.0
QL07p003736 Quercus lobata HOM05D005608 ORTHO05D007543 4.0e-146 521.5 283 84.5
Manes.08G052000 Manihot esculenta HOM05D005608 ORTHO05D007543 5.2e-146 521.2 283 84.8
Lj5g0018305 Lotus japonicus HOM05D005608 ORTHO05D007543 1.7e-144 516.2 279 86.0
Nn2g15128 Nelumbo nucifera HOM05D005608 ORTHO05D007543 2.2e-144 515.8 279 84.6
Ca_12243_v3 Cicer arietinum L. HOM05D005608 ORTHO05D007543 2.8e-144 515.4 281 85.4
Ca_12257_v3 Cicer arietinum L. HOM05D005608 ORTHO05D007543 2.8e-144 515.4 277 86.3
Glyma.02G186700 Glycine max HOM05D005608 ORTHO05D007543 3.7e-144 515.0 284 84.5
Lalb_Chr06g0173501 Lupinus albus HOM05D005608 ORTHO05D007543 4.8e-144 514.6 286 86.0
Glyma.10G106900 Glycine max HOM05D005608 ORTHO05D007543 8.2e-144 513.8 286 83.9
PGSC0003DMG401012699 Solanum tuberosum HOM05D005608 ORTHO05D007543 1.1e-143 513.5 283 83.7
CANSAT80G2626 Cannabis sativa HOM05D005608 ORTHO05D007543 4.1e-143 511.5 283 83.0
TAR369G0715 Trochodendron aralioides HOM05D005608 ORTHO05D007543 5.3e-143 511.1 284 82.4
Nitab4.5_0001618g0150 Nicotiana tabacum HOM05D005608 ORTHO05D007543 9.1e-143 510.4 283 83.4
Duzib106G2070 Durio zibethinus HOM05D005608 ORTHO05D007543 1.2e-142 510.0 284 82.7
Atru.chr1.1230 Acer truncatum HOM05D005608 ORTHO05D007543 1.6e-142 509.6 284 82.4
Solyc04g016360.3 Solanum lycopersicum HOM05D005608 ORTHO05D007543 2.6e-142 508.8 283 83.7
Phvul.007G250500 Phaseolus vulgaris HOM05D005608 ORTHO05D007543 3.5e-142 508.4 283 82.7
Ciclev10005572m.g Citrus clementina HOM05D005608 ORTHO05D007543 4.5e-142 508.1 284 82.7
Thecc.05G148100 Theobroma cacao HOM05D005608 ORTHO05D007543 4.5e-142 508.1 284 81.7
CAN.G676.7 Capsicum annuum HOM05D005608 ORTHO05D007543 7.7e-142 507.3 283 82.7
TAR369G0194 Trochodendron aralioides HOM05D005608 ORTHO05D007543 1.7e-141 506.1 284 81.7
Gohir.A01G193800 Gossypium hirsutum HOM05D005608 ORTHO05D007543 2.2e-141 505.8 284 82.7
Nitab4.5_0000826g0060 Nicotiana tabacum HOM05D005608 ORTHO05D007543 2.9e-141 505.4 283 82.7
Prupe.7G053400 Prunus persica HOM05D005608 ORTHO05D007543 2.9e-141 505.4 284 81.7
Sopen04g008450 Solanum pennellii HOM05D005608 ORTHO05D007543 2.9e-141 505.4 283 82.7
CSS0026365 Camellia sinensis var. sinensis HOM05D005608 ORTHO05D007543 3.8e-141 505.0 283 81.6
TWI77G0221 Tripterygium wilfordii HOM05D005608 ORTHO05D007543 3.8e-141 505.0 284 80.6
Gohir.D01G184100 Gossypium hirsutum HOM05D005608 ORTHO05D007543 8.5e-141 503.8 284 83.1
Gorai.002G227600 Gossypium raimondii HOM05D005608 ORTHO05D007543 8.5e-141 503.8 284 83.1
PSO384G3225 Papaver somniferum HOM05D005608 ORTHO05D007543 1.5e-140 503.1 283 82.7
CANSAT80G0897 Cannabis sativa HOM05D005608 ORTHO05D007543 1.9e-140 502.7 288 81.2
Oeu017928.1 Olea europaea HOM05D005608 ORTHO05D007543 2.5e-140 502.3 279 82.4
GSVIVG01033232001 Vitis vinifera HOM05D005608 ORTHO05D007543 3.2e-140 501.9 283 81.3
Actinidia39202 Actinidia chinensis HOM05D005608 ORTHO05D007543 4.2e-140 501.5 283 82.0
PSO339G6269 Papaver somniferum HOM05D005608 ORTHO05D007543 4.2e-140 501.5 283 82.7
CiPaw.09G040300 Carya illinoinensis HOM05D005608 ORTHO05D007543 7.2e-140 500.7 283 82.3
Sabra06G0032700 Salix brachista HOM05D005608 ORTHO05D007543 7.2e-140 500.7 279 82.8
Hund24681 Selenicereus undatus HOM05D005608 ORTHO05D007543 9.4e-140 500.4 284 80.3
FAN05G0975 Fragaria x ananassa HOM05D005608 ORTHO05D007543 1.2e-139 500.0 285 81.1
vmacro21968 Vaccinium macrocarpon HOM05D005608 ORTHO05D007543 1.6e-139 499.6 284 80.6
arahy.Tifrunner.gnm1.ann1.RCN63F Arachis hypogaea HOM05D005608 ORTHO05D007543 2.1e-139 499.2 280 82.5
CsaV3_4G027510 Cucumis sativus L. HOM05D005608 ORTHO05D007543 2.1e-139 499.2 284 79.6
Eucgr.K02019 Eucalyptus grandis HOM05D005608 ORTHO05D007543 2.1e-139 499.2 284 81.0
Sc19g0008540 Simmondsia chinensis HOM05D005608 ORTHO05D007543 2.1e-139 499.2 284 80.3
Haze_19791 Corylus avellana HOM05D005608 ORTHO05D007543 2.7e-139 498.8 283 82.0
Haze_19795 Corylus avellana HOM05D005608 ORTHO05D007543 2.7e-139 498.8 283 82.0
MELO3C026333.2 Cucumis melo HOM05D005608 ORTHO05D007543 2.7e-139 498.8 284 79.9
MD14G1077300 Malus domestica HOM05D005608 ORTHO05D007543 2.7e-139 498.8 283 80.9
RcHm_v2.0_Chr3g0483631 Rosa chinensis HOM05D005608 ORTHO05D007543 3.6e-139 498.4 279 82.4
Rhsim03G0028900 Rhododendron simsii HOM05D005608 ORTHO05D007543 4.7e-139 498.0 287 80.5
VMungo0720G2960 Vigna mungo HOM05D005608 ORTHO05D007543 4.7e-139 498.0 284 79.9
Cfa016779 Carpinus fangiana HOM05D005608 ORTHO05D007543 6.1e-139 497.7 283 82.3
Potri.006G047000 Populus trichocarpa HOM05D005608 ORTHO05D007543 8.0e-139 497.3 284 80.6
TAR633G2234 Trochodendron aralioides HOM05D005608 ORTHO05D007543 1.0e-138 496.9 283 80.2
Hma1.2p1_0110F.1_g052840 Hydrangea macrophylla HOM05D005608 ORTHO05D007543 1.4e-138 496.5 283 79.5
Hma1.2p1_1997F.1_g310445 Hydrangea macrophylla HOM05D005608 ORTHO05D007543 1.4e-138 496.5 283 79.5
FAN02G1028 Fragaria x ananassa HOM05D005608 ORTHO05D007543 1.8e-138 496.1 284 80.6
EL10Ac3g07137 Beta vulgaris HOM05D005608 ORTHO05D007543 2.3e-138 495.7 284 79.9
FvH4_6g24520 Fragaria vesca HOM05D005608 ORTHO05D007543 3.0e-138 495.4 279 81.7
Sed0023334 Sechium edule HOM05D005608 ORTHO05D007543 1.2e-137 493.4 284 78.2
MSTRG.26133 Avicennia marina HOM05D005608 ORTHO05D007543 1.5e-137 493.0 279 80.6
MSTRG.19838 Avicennia marina HOM05D005608 ORTHO05D007543 2.6e-137 492.3 278 81.7
Migut.J01725 Erythranthe guttata HOM05D005608 ORTHO05D007543 3.4e-137 491.9 277 81.6
Cc06_g18100 Coffea canephora HOM05D005608 ORTHO05D007543 9.8e-137 490.3 283 80.6
DCAR_013613 Daucus carota HOM05D005608 ORTHO05D007543 2.2e-136 489.2 278 79.5
Lj1A1125T63 Lonicera japonica HOM05D005608 ORTHO05D007543 2.2e-136 489.2 288 79.5
SalBow6G4364 Salvia bowleyana HOM05D005608 ORTHO05D007543 4.8e-136 488.0 278 80.2
CARHR136660 Cardamine hirsuta HOM05D005608 ORTHO05D007543 6.3e-136 487.6 280 80.7
SGA_v2.0_scaffold273G46432 Striga asiatica HOM05D005608 ORTHO05D007543 8.3e-136 487.3 271 80.8
Aqoxy2G00245 Aquilegia oxysepala HOM05D005608 ORTHO05D007543 1.1e-135 486.9 283 79.9
FAN14G1555 Fragaria x ananassa HOM05D005608 ORTHO05D007543 1.4e-135 486.5 282 80.1
HanXRQChr04g0125051 Helianthus annuus HOM05D005608 ORTHO05D007543 2.4e-135 485.7 279 80.6
AT2G41530 Arabidopsis thaliana HOM05D005608 ORTHO05D007543 9.1e-135 483.8 284 78.9
Peaxi162Scf00130g00829 Petunia axillaris HOM05D005608 ORTHO05D007543 2.0e-134 482.6 283 78.8
Aa31LG1G23580 Aethionema arabicum HOM05D005608 ORTHO05D007543 2.7e-134 482.3 279 79.6
AL4G39630 Arabidopsis lyrata HOM05D005608 ORTHO05D007543 2.7e-134 482.3 280 79.6
arahy.Tifrunner.gnm1.ann1.QZL5XH Arachis hypogaea HOM05D005608 ORTHO05D007543 4.5e-134 481.5 294 77.9
BcaNung04068 Brassica carinata HOM05D005608 ORTHO05D007543 7.7e-134 480.7 280 78.9
Thhalv10017045m.g Eutrema salsugineum HOM05D005608 ORTHO05D007543 7.7e-134 480.7 280 78.2
Sp4g23810 Schrenkiella parvula HOM05D005608 ORTHO05D007543 1.0e-133 480.3 283 77.7
HPP92_001434 Vanilla planifolia HOM05D005608 ORTHO05D007543 2.2e-133 479.2 279 79.2
A03p23310 Brassica napus HOM05D005608 ORTHO05D007543 2.9e-133 478.8 280 78.2
BraA03t11549Z Brassica rapa HOM05D005608 ORTHO05D007543 2.9e-133 478.8 280 78.2
CDE05G0378 Ceratophyllum demersum HOM05D005608 ORTHO05D007543 3.8e-133 478.4 281 76.2
BcaC01g05330 Brassica carinata HOM05D005608 ORTHO05D007543 5.0e-133 478.0 280 78.2
Carub.0004s2382 Capsella rubella HOM05D005608 ORTHO05D007543 8.5e-133 477.2 280 78.6
THA.LOC104801987 Tarenaya hassleriana HOM05D005608 ORTHO05D007543 1.5e-132 476.5 278 78.1
BolC3t15154H Brassica oleracea HOM05D005608 ORTHO05D007543 1.9e-132 476.1 280 78.2
C03p27830 Brassica napus HOM05D005608 ORTHO05D007543 3.2e-132 475.3 280 77.9
BraA05t19229Z Brassica rapa HOM05D005608 ORTHO05D007543 9.4e-132 473.8 281 78.3
BcaB01g03463 Brassica carinata HOM05D005608 ORTHO05D007543 1.6e-131 473.0 280 77.1
Peaxi162Scf00130g00828 Petunia axillaris HOM05D005608 ORTHO05D007543 2.1e-131 472.6 283 79.5
A05p02350 Brassica napus HOM05D005608 ORTHO05D007543 6.1e-131 471.1 281 77.9
AUR62026096 Chenopodium quinoa HOM05D005608 ORTHO05D007543 8.0e-131 470.7 301 73.1
C04p02790 Brassica napus HOM05D005608 ORTHO05D007543 1.0e-130 470.3 280 78.2
BolC4t21919H Brassica oleracea HOM05D005608 ORTHO05D007543 1.0e-130 470.3 280 78.2
Nitab4.5_0000636g0050 Nicotiana tabacum HOM05D005608 ORTHO05D007543 2.3e-130 469.2 284 77.8
ECA236G2378 Erigeron canadensis HOM05D005608 ORTHO05D007543 3.0e-130 468.8 271 78.6
ATR0721G011 Amborella trichopoda HOM05D005608 ORTHO05D007543 2.8e-128 462.2 275 77.1
SEGI_13354 Sequoiadendron giganteum HOM05D005608 ORTHO05D007543 3.7e-128 461.8 278 77.0
ClCG04G003700 Citrullus lanatus HOM05D005608 ORTHO05D007543 7.0e-127 457.6 284 75.0
Sed0008486 Sechium edule HOM05D005608 ORTHO05D007543 9.2e-127 457.2 284 73.6
Lsat_1_v5_gn_8_82180 Lactuca sativa HOM05D005608 ORTHO05D007543 1.2e-126 456.8 327 67.3
Os01g0939700 Oryza sativa ssp. japonica HOM05D005608 ORTHO05D007543 5.6e-124 448.0 279 72.8
Sed0024564 Sechium edule HOM05D005608 ORTHO05D007543 1.2e-118 430.3 284 69.4
Cpa.g.sc182.15 Carica papaya HOM05D005608 ORTHO05D007543 2.7e-118 429.1 247 79.8
AUR62024510 Chenopodium quinoa HOM05D005608 ORTHO05D007543 5.9e-118 427.9 234 82.9
unitig_21.g20519 Utricularia gibba HOM05D005608 ORTHO05D007543 1.0e-117 427.2 284 72.2
Eucgr.K01713 Eucalyptus grandis HOM05D005608 ORTHO05D007543 2.3e-117 426.0 272 73.2
Pp3c11_8660 Physcomitrium patens HOM05D005608 ORTHO05D007543 2.3e-117 426.0 281 70.1
MBI19_g29889_MAGBIO Magnolia biondii HOM05D005608 ORTHO05D007543 6.6e-117 424.5 239 79.9
Mapoly0020s0136 Marchantia polymorpha HOM05D005608 ORTHO05D007543 3.5e-110 402.1 281 67.3
CBR_g12387 Chara braunii HOM05D005608 ORTHO05D007543 8.6e-109 397.5 285 66.3
SMO174G0027 Selaginella moellendorffii HOM05D005608 ORTHO05D007543 1.9e-108 396.4 284 66.5
MD12G1082500 Malus domestica HOM05D005608 ORTHO05D007543 7.1e-103 377.9 226 78.8
Zm00001eb363240 Zea mays HOM05D005608 ORTHO05D007543 9.5e-100 367.5 225 74.7
Dinv39657 Davidia involucrata HOM05D005608 ORTHO05D007543 6.4e-96 354.8 197 83.8
TPR.G19661 Trifolium pratense HOM05D005608 ORTHO05D007543 7.1e-95 351.3 168 98.2
Cre03.g158800 Chlamydomonas reinhardtii HOM05D005608 ORTHO05D007543 3.3e-92 342.4 284 58.1
SalBow6G3992 Salvia bowleyana HOM05D005608 ORTHO05D007543 2.9e-88 329.3 286 58.0
Psat6g091560 Pisum sativum HOM05D005608 ORTHO05D007543 2.7e-86 322.8 167 90.4
COL.COLO4_32782 Corchorus olitorius HOM05D005608 ORTHO05D007543 1.0e-85 320.9 272 59.9
Haze_27232 Corylus avellana HOM05D005608 ORTHO05D007543 1.2e-78 297.4 314 46.5
Haze_26706 Corylus avellana HOM05D005608 ORTHO05D007543 3.3e-68 262.7 280 47.5
Medtr0931s0010 Medicago truncatula HOM05D005608 ORTHO05D044358 4.9e-64 248.8 230 53.0
PRCOL_00003320 Prasinoderma coloniale HOM05D000219 ORTHO05D000226 1.6e-62 243.8 292 47.3
MCO09G089 Micromonas commoda HOM05D000219 ORTHO05D000226 4.6e-62 242.3 277 46.6
Medtr1g052165 Medicago truncatula HOM05D005608 ORTHO05D048895 1.8e-58 230.3 112 93.8
TPR.G23055 Trifolium pratense HOM05D005608 ORTHO05D048895 8.2e-51 204.9 103 91.3
Zm00001eb010250 Zea mays HOM05D005608 ORTHO05D007543 7.5e-20 102.1 79 60.8
Zm00001eb141600 Zea mays HOM05D005608 ORTHO05D007543 4.7e-14 82.8 68 55.9
SEGI_35043 Sequoiadendron giganteum HOM05D005608 ORTHO05D384886 8.0e-14 82.0 51 76.5
Pp3c1_10050 Physcomitrium patens HOM05D005608 ORTHO05D319324 1.7e-11 74.3 56 58.9
PSO765G0043 Papaver somniferum HOM05D005608 ORTHO05D302623 7.3e-07 58.9 48 68.8


User provided reference genes

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