Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G19612 Trifolium pratense HOM05D000062 ORTHO05D410960 2.6e-172 608.6 301 100.0
TPR.G13709 Trifolium pratense HOM05D000062 ORTHO05D008040 7.1e-45 185.3 355 38.3
Ca_21652_v3 Cicer arietinum L. HOM05D000062 ORTHO05D008040 4.3e-42 176.0 356 36.5
TPR.G9002 Trifolium pratense HOM05D000062 ORTHO05D008040 1.3e-35 154.5 349 33.8
TPR.G34127 Trifolium pratense HOM05D000062 ORTHO05D008040 4.3e-34 149.4 341 34.6
Medtr4g107920 Medicago truncatula HOM05D000062 ORTHO05D008040 1.9e-29 134.0 345 32.2
Glyma.01G238600 Glycine max HOM05D000062 ORTHO05D008040 5.4e-29 132.5 346 32.4
TPR.G37867 Trifolium pratense HOM05D000062 ORTHO05D008040 1.6e-28 131.0 346 32.4
TPR.G38401 Trifolium pratense HOM05D000062 ORTHO05D008040 2.7e-28 130.2 334 32.0
Ca_24394_v3 Cicer arietinum L. HOM05D000062 ORTHO05D008040 2.3e-27 127.1 351 31.9
Lalb_Chr09g0319841 Lupinus albus HOM05D000062 ORTHO05D008040 3.9e-27 126.3 346 31.2
Medtr5g006180 Medicago truncatula HOM05D000062 ORTHO05D008040 3.9e-27 126.3 338 32.5
arahy.Tifrunner.gnm1.ann1.6XM150 Arachis hypogaea HOM05D000062 ORTHO05D008040 5.1e-27 125.9 348 31.3
VMungo1215G2717 Vigna mungo HOM05D000062 ORTHO05D008040 8.7e-27 125.2 346 30.6
arahy.Tifrunner.gnm1.ann1.462RQZ Arachis hypogaea HOM05D000062 ORTHO05D008040 1.1e-26 124.8 348 31.3
Eucgr.H03518 Eucalyptus grandis HOM05D000062 ORTHO05D008040 3.3e-26 123.2 348 29.3
Medtr4g115780 Medicago truncatula HOM05D000062 ORTHO05D008040 5.6e-26 122.5 352 31.8
COL.COLO4_05311 Corchorus olitorius HOM05D000062 ORTHO05D008040 1.3e-25 121.3 347 30.3
Thecc.04G230400 Theobroma cacao HOM05D000062 ORTHO05D008040 1.6e-25 120.9 347 29.4
TPR.G7997 Trifolium pratense HOM05D000062 ORTHO05D008040 2.8e-25 120.2 353 31.2
Potri.008G152000 Populus trichocarpa HOM05D000062 ORTHO05D008040 3.6e-25 119.8 348 29.3
Lj1g0020820 Lotus japonicus HOM05D000062 ORTHO05D008040 4.8e-25 119.4 349 30.9
TPR.G9010 Trifolium pratense HOM05D000062 ORTHO05D008040 1.1e-24 118.2 149 48.3
Lj3P737T46 Lonicera japonica HOM05D000062 ORTHO05D008040 1.4e-24 117.9 339 31.0
Dinv44528 Davidia involucrata HOM05D000062 ORTHO05D008040 2.4e-24 117.1 349 28.1
QL06p002678 Quercus lobata HOM05D000062 ORTHO05D008040 4.0e-24 116.3 348 29.0
MD13G1191900 Malus domestica HOM05D000062 ORTHO05D008040 9.0e-24 115.2 348 29.0
PGSC0003DMG400030089 Solanum tuberosum HOM05D000062 ORTHO05D008040 9.0e-24 115.2 348 28.7
Cfa015634 Carpinus fangiana HOM05D000062 ORTHO05D008040 1.2e-23 114.8 348 29.3
Duzib212G0736 Durio zibethinus HOM05D000062 ORTHO05D008040 1.2e-23 114.8 348 27.9
Sabra10G0054400 Salix brachista HOM05D000062 ORTHO05D008040 1.2e-23 114.8 348 29.3
TPR.G25227 Trifolium pratense HOM05D000062 ORTHO05D008040 1.5e-23 114.4 147 47.6
Actinidia08496 Actinidia chinensis HOM05D000062 ORTHO05D008040 4.5e-23 112.8 363 28.4
Prupe.1G012200 Prunus persica HOM05D000062 ORTHO05D008040 4.5e-23 112.8 348 29.6
PGR004G2216 Punica granatum HOM05D000062 ORTHO05D008040 5.8e-23 112.5 354 28.0
Sopen09g030780 Solanum pennellii HOM05D000062 ORTHO05D008040 5.8e-23 112.5 348 29.0
GSVIVG01017960001 Vitis vinifera HOM05D000062 ORTHO05D008040 9.9e-23 111.7 347 28.0
SalBow2G3043 Salvia bowleyana HOM05D000062 ORTHO05D008040 1.3e-22 111.3 347 29.1
Aa31LG5G4900 Aethionema arabicum HOM05D000062 ORTHO05D008040 1.7e-22 110.9 348 27.6
BcaB02g10452 Brassica carinata HOM05D000062 ORTHO05D008040 1.7e-22 110.9 310 29.7
AUR62041322 Chenopodium quinoa HOM05D000062 ORTHO05D008040 1.7e-22 110.9 354 28.0
MD16G1192600 Malus domestica HOM05D000062 ORTHO05D008040 1.7e-22 110.9 348 28.7
Potri.010G088600 Populus trichocarpa HOM05D000062 ORTHO05D008040 1.7e-22 110.9 348 28.7
Sabra08G0115800 Salix brachista HOM05D000062 ORTHO05D008040 1.7e-22 110.9 348 28.2
CAN.G907.7 Capsicum annuum HOM05D000062 ORTHO05D008040 2.2e-22 110.5 353 29.5
Gorai.006G238400 Gossypium raimondii HOM05D000062 ORTHO05D008040 2.2e-22 110.5 347 28.2
Peaxi162Scf00092g00123 Petunia axillaris HOM05D000062 ORTHO05D008040 2.2e-22 110.5 348 28.7
Rhsim02G0023300 Rhododendron simsii HOM05D000062 ORTHO05D008040 2.9e-22 110.2 346 27.7
Sed0020943 Sechium edule HOM05D000062 ORTHO05D008040 2.9e-22 110.2 348 28.2
Ciclev10004635m.g Citrus clementina HOM05D000062 ORTHO05D008040 3.8e-22 109.8 348 27.9
Manes.15G028300 Manihot esculenta HOM05D000062 ORTHO05D008040 4.9e-22 109.4 348 28.4
Oeu031237.1 Olea europaea HOM05D000062 ORTHO05D008040 4.9e-22 109.4 352 27.8
Carub.0004s1346 Capsella rubella HOM05D000062 ORTHO05D008040 6.4e-22 109.0 337 27.9
TAR365G0407 Trochodendron aralioides HOM05D000062 ORTHO05D008040 6.4e-22 109.0 348 28.2
AL103U10020 Arabidopsis lyrata HOM05D000062 ORTHO05D008040 8.4e-22 108.6 337 27.9
AL4G27490 Arabidopsis lyrata HOM05D000062 ORTHO05D008040 8.4e-22 108.6 337 27.9
EL10Ac3g06426 Beta vulgaris HOM05D000062 ORTHO05D008040 8.4e-22 108.6 348 27.3
Gohir.D09G217700 Gossypium hirsutum HOM05D000062 ORTHO05D008040 8.4e-22 108.6 347 28.2
Medtr4g103780 Medicago truncatula HOM05D000062 ORTHO05D008040 8.4e-22 108.6 281 33.5
CANSAT78G0393 Cannabis sativa HOM05D000062 ORTHO05D008040 1.1e-21 108.2 350 29.1
MELO3C006536.2 Cucumis melo HOM05D000062 ORTHO05D008040 1.1e-21 108.2 348 27.9
Cc03_g03680 Coffea canephora HOM05D000062 ORTHO05D008040 1.4e-21 107.8 353 28.6
CSS0005594 Camellia sinensis var. sinensis HOM05D000062 ORTHO05D008040 1.9e-21 107.5 335 28.4
AUR62024018 Chenopodium quinoa HOM05D000062 ORTHO05D008040 1.9e-21 107.5 352 26.7
CsaV3_3G013380 Cucumis sativus L. HOM05D000062 ORTHO05D008040 1.9e-21 107.5 348 27.9
Hund12137 Selenicereus undatus HOM05D000062 ORTHO05D008040 1.9e-21 107.5 348 28.4
Gohir.A09G215200 Gossypium hirsutum HOM05D000062 ORTHO05D008040 2.4e-21 107.1 347 28.0
Solyc09g075950.1 Solanum lycopersicum HOM05D000062 ORTHO05D008040 2.4e-21 107.1 348 27.9
Nitab4.5_0000932g0020 Nicotiana tabacum HOM05D000062 ORTHO05D008040 3.2e-21 106.7 348 28.4
MSTRG.21850 Avicennia marina HOM05D000062 ORTHO05D008040 5.4e-21 105.9 346 28.6
Haze_00910 Corylus avellana HOM05D000062 ORTHO05D008040 5.4e-21 105.9 348 28.2
Nn1g02279 Nelumbo nucifera HOM05D000062 ORTHO05D008040 5.4e-21 105.9 348 27.6
MBI04_g20821_MAGBIO Magnolia biondii HOM05D000062 ORTHO05D008040 7.1e-21 105.5 346 27.5
THA.LOC104800965 Tarenaya hassleriana HOM05D000062 ORTHO05D008040 7.1e-21 105.5 348 26.1
AT2G32120 Arabidopsis thaliana HOM05D000062 ORTHO05D008040 1.2e-20 104.8 337 27.0
Cpa.g.sc58.117 Carica papaya HOM05D000062 ORTHO05D008040 1.2e-20 104.8 348 27.3
Aqoxy5G00482 Aquilegia oxysepala HOM05D000062 ORTHO05D008040 1.6e-20 104.4 350 28.6
C04p17510 Brassica napus HOM05D000062 ORTHO05D008040 1.6e-20 104.4 338 26.6
BolC4t23298H Brassica oleracea HOM05D000062 ORTHO05D008040 1.6e-20 104.4 338 26.6
Nitab4.5_0000043g0270 Nicotiana tabacum HOM05D000062 ORTHO05D008040 2.1e-20 104.0 348 28.2
Sp4g14520 Schrenkiella parvula HOM05D000062 ORTHO05D008040 2.1e-20 104.0 337 26.7
Ah.04g154520 Amaranthus hybridus HOM05D000062 ORTHO05D008040 4.6e-20 102.8 353 27.8
Atru.ctg752_3.92 Acer truncatum HOM05D000062 ORTHO05D008040 6.0e-20 102.4 329 27.4
DCAR_030628 Daucus carota HOM05D000062 ORTHO05D008040 6.0e-20 102.4 349 28.9
Os03g0218500 Oryza sativa ssp. japonica HOM05D000062 ORTHO05D008040 6.0e-20 102.4 346 26.9
A05p13390 Brassica napus HOM05D000062 ORTHO05D008040 7.9e-20 102.1 339 26.8
CARHR125910 Cardamine hirsuta HOM05D000062 ORTHO05D008040 7.9e-20 102.1 336 26.2
BraA05t20277Z Brassica rapa HOM05D000062 ORTHO05D008040 1.0e-19 101.7 339 26.8
ClCG05G005200 Citrullus lanatus HOM05D000062 ORTHO05D008040 2.3e-19 100.5 348 27.6
Sc19g0004230 Simmondsia chinensis HOM05D000062 ORTHO05D008040 3.0e-19 100.1 352 27.8
Thhalv10016453m.g Eutrema salsugineum HOM05D000062 ORTHO05D008040 3.9e-19 99.8 337 25.5
Medtr5g090110 Medicago truncatula HOM05D000062 ORTHO05D008040 8.7e-19 98.6 174 39.1
ECA236G3103 Erigeron canadensis HOM05D000014 ORTHO05D000093 1.5e-18 97.8 350 26.3
ATR0332G079 Amborella trichopoda HOM05D000062 ORTHO05D008040 1.9e-18 97.4 296 27.7
Zm00001eb400020 Zea mays HOM05D000062 ORTHO05D008040 2.5e-18 97.1 346 26.6
FAN17G2500 Fragaria x ananassa HOM05D000062 ORTHO05D008040 4.3e-18 96.3 347 28.2
CiPaw.01G165100 Carya illinoinensis HOM05D000062 ORTHO05D008040 5.6e-18 95.9 346 26.9
FAN07G0848 Fragaria x ananassa HOM05D000062 ORTHO05D008040 7.4e-18 95.5 347 28.0
FAN12G0430 Fragaria x ananassa HOM05D000062 ORTHO05D008040 1.3e-17 94.7 347 28.2
HPP92_020372 Vanilla planifolia HOM05D000062 ORTHO05D008040 1.3e-17 94.7 346 26.6
Gohir.A09G215250 Gossypium hirsutum HOM05D000062 ORTHO05D008040 2.1e-17 94.0 322 26.1
FvH4_4g15410 Fragaria vesca HOM05D000062 ORTHO05D008040 3.7e-17 93.2 347 28.0
RcHm_v2.0_Chr4g0416401 Rosa chinensis HOM05D000062 ORTHO05D008040 3.7e-17 93.2 347 26.5
FAN22G2250 Fragaria x ananassa HOM05D000062 ORTHO05D008040 4.8e-17 92.8 347 27.4
Gohir.D09G217750 Gossypium hirsutum HOM05D000062 ORTHO05D008040 2.4e-16 90.5 334 24.9
Gorai.006G238600 Gossypium raimondii HOM05D000062 ORTHO05D008040 2.4e-16 90.5 334 24.9
SGA_v2.0_scaffold39G15248 Striga asiatica HOM05D000062 ORTHO05D008040 2.4e-16 90.5 350 25.7
PSO832G1811 Papaver somniferum HOM05D000062 ORTHO05D008040 4.0e-16 89.7 347 25.6
Medtr4g115785 Medicago truncatula HOM05D000062 ORTHO05D023264 5.3e-16 89.4 72 66.7
Psat2g051360 Pisum sativum HOM05D000062 ORTHO05D008040 5.8e-15 85.9 257 29.6
HanXRQChr16g0521681 Helianthus annuus HOM05D000062 ORTHO05D008040 1.7e-14 84.3 338 26.6
SEGI_38754 Sequoiadendron giganteum HOM05D000062 ORTHO05D008040 2.9e-14 83.6 323 26.0
TPR.G19719 Trifolium pratense HOM05D000062 ORTHO05D411668 1.4e-13 81.3 72 62.5
Lsat_1_v5_gn_9_81121 Lactuca sativa HOM05D000062 ORTHO05D008040 3.2e-13 80.1 257 27.2
CDE06G1449 Ceratophyllum demersum HOM05D000062 ORTHO05D008040 4.2e-13 79.7 334 25.4
TPR.G34105 Trifolium pratense HOM05D000062 ORTHO05D037791 4.2e-13 79.7 51 76.5
TPR.G17510 Trifolium pratense HOM05D000062 ORTHO05D021134 5.5e-13 79.3 62 69.4
Migut.J00342 Erythranthe guttata HOM05D000062 ORTHO05D000043 1.6e-12 77.8 212 26.9
TPR.G11222 Trifolium pratense HOM05D000062 ORTHO05D037791 2.7e-12 77.0 48 77.1
Pp3c3_26570 Physcomitrium patens HOM05D000062 ORTHO05D000043 1.3e-11 74.7 258 24.8
ECA236G3429 Erigeron canadensis HOM05D000062 ORTHO05D000043 1.8e-11 74.3 249 24.9
TPR.G3953 Trifolium pratense HOM05D000062 ORTHO05D037791 8.7e-11 72.0 51 72.5
Psat4g210520 Pisum sativum HOM05D000062 ORTHO05D008040 2.5e-10 70.5 291 27.1
Psat4g035840 Pisum sativum HOM05D000062 ORTHO05D021134 4.3e-10 69.7 71 57.7
Phvul.002G046600 Phaseolus vulgaris HOM05D000062 ORTHO05D008040 9.6e-10 68.6 50 58.0
Migut.G00332 Erythranthe guttata HOM05D000062 ORTHO05D008040 1.3e-09 68.2 252 25.4
DCAR_027648 Daucus carota HOM05D000062 ORTHO05D000043 2.8e-09 67.0 218 26.1
SEGI_28377 Sequoiadendron giganteum HOM05D000062 ORTHO05D008040 8.2e-09 65.5 104 42.3
TPR.G8004 Trifolium pratense HOM05D000062 ORTHO05D021134 8.2e-09 65.5 65 60.0
Medtr2g040220 Medicago truncatula HOM05D000005 ORTHO05D000012 1.1e-08 65.1 165 27.3
Medtr2g040355 Medicago truncatula HOM05D000062 ORTHO05D000043 1.8e-08 64.3 251 26.3
COL.COLO4_14989 Corchorus olitorius HOM05D000062 ORTHO05D000043 2.4e-08 63.9 101 34.7
SpUn0328_0010 Schrenkiella parvula HOM05D000062 ORTHO05D000043 2.4e-08 63.9 94 35.1
RcHm_v2.0_Chr6g0290311 Rosa chinensis HOM05D000062 ORTHO05D008040 4.0e-08 63.2 101 41.6
BolC1t03526H Brassica oleracea HOM05D000062 ORTHO05D000043 9.0e-08 62.0 274 23.0
Medtr1g017130 Medicago truncatula HOM05D000062 ORTHO05D000043 1.5e-07 61.2 104 31.7
Hma1.2p1_0222F.1_g093760 Hydrangea macrophylla HOM05D000062 ORTHO05D000043 2.0e-07 60.8 219 24.7
SMO172G0025 Selaginella moellendorffii HOM05D000062 ORTHO05D008040 2.6e-07 60.5 363 22.0
AagrBONN_evm.TU.Sc2ySwM_344.4607 Anthoceros agrestis HOM05D000062 ORTHO05D008040 7.6e-07 58.9 101 36.6
AagrBONN_evm.TU.Sc2ySwM_344.4608 Anthoceros agrestis HOM05D000062 ORTHO05D008040 7.6e-07 58.9 101 36.6
CDE08G0482 Ceratophyllum demersum HOM05D000062 ORTHO05D000043 7.6e-07 58.9 112 31.2
Gohir.D12G112833 Gossypium hirsutum HOM05D000062 ORTHO05D000043 1.0e-06 58.5 251 23.5
SGA_v2.0_scaffold653G53369 Striga asiatica HOM05D000062 ORTHO05D000043 1.0e-06 58.5 227 25.1
FAN24G1888 Fragaria x ananassa HOM05D000062 ORTHO05D000043 1.7e-06 57.8 181 25.4
FAN01G2329 Fragaria x ananassa HOM05D000062 ORTHO05D000043 2.9e-06 57.0 138 26.1
Lj2g0027960 Lotus japonicus HOM05D000062 ORTHO05D000043 2.9e-06 57.0 73 38.4
arahy.Tifrunner.gnm1.ann1.FGJH0E Arachis hypogaea HOM05D000062 ORTHO05D000043 3.8e-06 56.6 120 29.2
ECA232G1011 Erigeron canadensis HOM05D000062 ORTHO05D000043 3.8e-06 56.6 151 25.8
FvH4_2g04360 Fragaria vesca HOM05D000062 ORTHO05D000043 3.8e-06 56.6 108 33.3
CDE02G3447 Ceratophyllum demersum HOM05D000062 ORTHO05D000043 4.9e-06 56.2 106 31.1
ECA238G1552 Erigeron canadensis HOM05D000062 ORTHO05D000043 4.9e-06 56.2 85 35.3
RcHm_v2.0_Chr7g0201001 Rosa chinensis HOM05D000062 ORTHO05D000043 4.9e-06 56.2 115 31.3
Actinidia27170 Actinidia chinensis HOM05D000062 ORTHO05D008040 6.5e-06 55.8 43 62.8
Actinidia36965 Actinidia chinensis HOM05D000062 ORTHO05D021134 6.5e-06 55.8 43 62.8
C04p26960 Brassica napus HOM05D000062 ORTHO05D000043 8.4e-06 55.5 213 22.5
MD01G1129200 Malus domestica HOM05D000062 ORTHO05D000043 8.4e-06 55.5 74 41.9


User provided reference genes

Program Settings