Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G19604 Trifolium pratense HOM05D005121 ORTHO05D006115 2.4e-173 612.1 305 100.0
Psat1g209560 Pisum sativum HOM05D005121 ORTHO05D006115 2.2e-163 578.9 305 94.4
Medtr2g011480 Medicago truncatula HOM05D005121 ORTHO05D006115 3.8e-163 578.2 305 94.4
Ca_00225_v3 Cicer arietinum L. HOM05D005121 ORTHO05D006115 3.9e-160 568.2 305 92.5
Lj6g0004146 Lotus japonicus HOM05D005121 ORTHO05D006115 4.1e-157 558.1 305 89.5
Glyma.13G247800 Glycine max HOM05D005121 ORTHO05D006115 8.5e-155 550.4 305 88.9
Thecc.06G202500 Theobroma cacao HOM05D005121 ORTHO05D006115 1.9e-154 549.3 305 88.2
Lalb_Chr18g0060031 Lupinus albus HOM05D005121 ORTHO05D006115 4.2e-154 548.1 305 88.2
Glyma.15G066000 Glycine max HOM05D005121 ORTHO05D006115 5.5e-154 547.7 305 88.9
VMungo0540G0293 Vigna mungo HOM05D005121 ORTHO05D006115 3.6e-153 545.0 305 88.2
Phvul.006G193700 Phaseolus vulgaris HOM05D005121 ORTHO05D006115 6.1e-153 544.3 305 88.2
GSVIVG01003678001 Vitis vinifera HOM05D005121 ORTHO05D006115 1.7e-150 536.2 305 85.6
Cc06_g18220 Coffea canephora HOM05D005121 ORTHO05D006115 6.3e-150 534.3 305 85.2
Actinidia24048 Actinidia chinensis HOM05D005121 ORTHO05D006115 1.4e-149 533.1 305 84.3
Gohir.D10G019900 Gossypium hirsutum HOM05D005121 ORTHO05D006115 1.4e-149 533.1 305 85.2
TWI63G0506 Tripterygium wilfordii HOM05D005121 ORTHO05D006115 9.1e-149 530.4 305 84.3
arahy.Tifrunner.gnm1.ann1.XU4W4S Arachis hypogaea HOM05D005121 ORTHO05D006115 1.5e-148 529.6 305 85.2
CiPaw.10G115700 Carya illinoinensis HOM05D005121 ORTHO05D006115 2.0e-148 529.3 305 83.9
arahy.Tifrunner.gnm1.ann1.ANU5MI Arachis hypogaea HOM05D005121 ORTHO05D006115 4.5e-148 528.1 305 84.9
arahy.Tifrunner.gnm1.ann1.FY8LHX Arachis hypogaea HOM05D005121 ORTHO05D006115 4.5e-148 528.1 305 84.9
Potri.011G040000 Populus trichocarpa HOM05D005121 ORTHO05D006115 4.5e-148 528.1 305 83.9
HanXRQChr12g0359441 Helianthus annuus HOM05D005121 ORTHO05D006115 7.7e-148 527.3 305 82.3
CSS0043949 Camellia sinensis var. sinensis HOM05D005121 ORTHO05D006115 1.7e-147 526.2 305 83.9
CAN.G424.38 Capsicum annuum HOM05D005121 ORTHO05D006115 1.7e-147 526.2 305 82.3
Lj1A1216T23 Lonicera japonica HOM05D005121 ORTHO05D006115 1.7e-147 526.2 307 83.4
DCAR_004161 Daucus carota HOM05D005121 ORTHO05D006115 2.9e-147 525.4 305 81.6
Potri.004G026800 Populus trichocarpa HOM05D005121 ORTHO05D006115 2.9e-147 525.4 305 83.6
CSS0003935 Camellia sinensis var. sinensis HOM05D005121 ORTHO05D006115 3.8e-147 525.0 305 83.6
Nitab4.5_0000649g0190 Nicotiana tabacum HOM05D005121 ORTHO05D006115 3.8e-147 525.0 305 81.6
Sed0024430 Sechium edule HOM05D005121 ORTHO05D006115 1.9e-146 522.7 305 83.6
CsaV3_6G007300 Cucumis sativus L. HOM05D005121 ORTHO05D006115 2.5e-146 522.3 305 83.3
RcHm_v2.0_Chr5g0005701 Rosa chinensis HOM05D005121 ORTHO05D006115 4.2e-146 521.5 305 82.3
Sabra11G0027500 Salix brachista HOM05D005121 ORTHO05D006115 9.4e-146 520.4 305 83.0
CANSAT56G0975 Cannabis sativa HOM05D005121 ORTHO05D006115 1.2e-145 520.0 305 83.3
Duzib160G0488 Durio zibethinus HOM05D005121 ORTHO05D006115 1.2e-145 520.0 305 83.3
Rhsim02G0118100 Rhododendron simsii HOM05D005121 ORTHO05D006115 1.2e-145 520.0 305 82.3
Dinv18977 Davidia involucrata HOM05D005121 ORTHO05D006115 1.6e-145 519.6 305 83.0
ECA234G4718 Erigeron canadensis HOM05D005121 ORTHO05D006115 1.6e-145 519.6 305 81.3
MELO3C022396.2 Cucumis melo HOM05D005121 ORTHO05D006115 2.1e-145 519.2 305 82.6
Oeu027963.1 Olea europaea HOM05D005121 ORTHO05D006115 2.1e-145 519.2 305 82.0
Duzib235G0052 Durio zibethinus HOM05D005121 ORTHO05D006115 2.7e-145 518.8 305 84.3
FvH4_3g03660 Fragaria vesca HOM05D005121 ORTHO05D006115 3.6e-145 518.5 305 82.0
FAN25G2418 Fragaria x ananassa HOM05D005121 ORTHO05D006115 3.6e-145 518.5 305 82.0
ClCG06G001360 Citrullus lanatus HOM05D005121 ORTHO05D006115 4.7e-145 518.1 305 82.6
Ciclev10016069m.g Citrus clementina HOM05D005121 ORTHO05D006115 6.1e-145 517.7 305 83.0
FAN21G3866 Fragaria x ananassa HOM05D005121 ORTHO05D006115 1.0e-144 516.9 305 81.3
TWI38G0490 Tripterygium wilfordii HOM05D005121 ORTHO05D006115 1.0e-144 516.9 305 82.0
PSO210G2069 Papaver somniferum HOM05D005121 ORTHO05D006115 1.4e-144 516.5 305 81.0
MSTRG.7276 Avicennia marina HOM05D005121 ORTHO05D006115 1.8e-144 516.2 305 82.0
MD10G1305900 Malus domestica HOM05D005121 ORTHO05D006115 2.3e-144 515.8 305 81.3
Lsat_1_v5_gn_5_78441 Lactuca sativa HOM05D005121 ORTHO05D006115 3.0e-144 515.4 305 80.7
Peaxi162Scf01152g00110 Petunia axillaris HOM05D005121 ORTHO05D006115 5.2e-144 514.6 305 80.7
QL05p080508 Quercus lobata HOM05D005121 ORTHO05D006115 8.8e-144 513.8 304 81.9
CsaV3_7G021490 Cucumis sativus L. HOM05D005121 ORTHO05D006115 1.1e-143 513.5 305 82.0
Nitab4.5_0005620g0020 Nicotiana tabacum HOM05D005121 ORTHO05D006115 1.1e-143 513.5 305 80.3
AUR62012514 Chenopodium quinoa HOM05D005121 ORTHO05D006115 1.5e-143 513.1 305 81.3
COL.COLO4_31636 Corchorus olitorius HOM05D005121 ORTHO05D006115 1.5e-143 513.1 305 83.0
Eucgr.D00772 Eucalyptus grandis HOM05D005121 ORTHO05D006115 1.5e-143 513.1 305 81.6
AUR62014685 Chenopodium quinoa HOM05D005121 ORTHO05D006115 2.0e-143 512.7 305 81.0
MELO3C013201.2 Cucumis melo HOM05D005121 ORTHO05D006115 2.6e-143 512.3 305 82.0
ClCG09G021600 Citrullus lanatus HOM05D005121 ORTHO05D006115 3.3e-143 511.9 305 81.6
FAN16G2329 Fragaria x ananassa HOM05D005121 ORTHO05D006115 4.4e-143 511.5 302 81.8
PGSC0003DMG400022347 Solanum tuberosum HOM05D005121 ORTHO05D006115 4.4e-143 511.5 305 80.0
Gorai.011G021100 Gossypium raimondii HOM05D005121 ORTHO05D006115 5.7e-143 511.1 305 82.0
Sopen02g024200 Solanum pennellii HOM05D005121 ORTHO05D006115 9.7e-143 510.4 305 79.7
MD05G1329000 Malus domestica HOM05D005121 ORTHO05D006115 1.3e-142 510.0 305 81.0
Manes.17G032800 Manihot esculenta HOM05D005121 ORTHO05D006115 1.3e-142 510.0 301 83.1
Solyc02g079400.3 Solanum lycopersicum HOM05D005121 ORTHO05D006115 1.7e-142 509.6 305 79.7
Prupe.4G033800 Prunus persica HOM05D005121 ORTHO05D006115 3.7e-142 508.4 305 80.7
Gohir.A10G019000 Gossypium hirsutum HOM05D005121 ORTHO05D006115 4.8e-142 508.1 305 81.3
FAN11G1262 Fragaria x ananassa HOM05D005121 ORTHO05D006115 5.3e-141 504.6 330 75.8
TAR627G0857 Trochodendron aralioides HOM05D005121 ORTHO05D006115 9.1e-141 503.8 305 80.0
DCAR_008096 Daucus carota HOM05D005121 ORTHO05D006115 1.6e-140 503.1 305 78.7
THA.LOC104809541 Tarenaya hassleriana HOM05D005121 ORTHO05D006115 2.6e-140 502.3 302 80.5
EL10Ac6g14131 Beta vulgaris HOM05D005121 ORTHO05D006115 7.7e-140 500.7 305 79.7
SGA_v2.0_scaffold114G31993 Striga asiatica HOM05D005121 ORTHO05D006115 7.7e-140 500.7 308 79.2
Aqoxy7G03433 Aquilegia oxysepala HOM05D005121 ORTHO05D006115 1.0e-139 500.4 305 79.0
Nn1g06832 Nelumbo nucifera HOM05D005121 ORTHO05D006115 1.7e-139 499.6 305 80.0
Manes.16G019177 Manihot esculenta HOM05D005121 ORTHO05D006115 2.9e-139 498.8 301 81.1
PGR031G1397 Punica granatum HOM05D005121 ORTHO05D006115 5.0e-139 498.0 305 78.7
Migut.M01229 Erythranthe guttata HOM05D005121 ORTHO05D006115 1.5e-138 496.5 305 78.7
Os03g0279900 Oryza sativa ssp. japonica HOM05D005121 ORTHO05D006115 2.5e-138 495.7 303 78.2
unitig_26.g9381 Utricularia gibba HOM05D005121 ORTHO05D006115 2.5e-138 495.7 305 77.4
Oeu030047.2 Olea europaea HOM05D005121 ORTHO05D006115 3.2e-138 495.4 326 74.5
Hund21294 Selenicereus undatus HOM05D005121 ORTHO05D006115 1.2e-137 493.4 303 78.9
Aa31LG2G9240 Aethionema arabicum HOM05D005121 ORTHO05D006115 2.7e-137 492.3 305 78.0
Sabra04G0015300 Salix brachista HOM05D005121 ORTHO05D006115 4.7e-137 491.5 372 68.0
CARHR050750 Cardamine hirsuta HOM05D005121 ORTHO05D006115 6.7e-136 487.6 307 75.9
Cfa000313 Carpinus fangiana HOM05D005121 ORTHO05D006115 1.5e-135 486.5 300 78.0
AL2G14620 Arabidopsis lyrata HOM05D005121 ORTHO05D006115 2.6e-135 485.7 307 75.6
Sc24g0000680 Simmondsia chinensis HOM05D005121 ORTHO05D006115 2.6e-135 485.7 307 77.2
Thhalv10023604m.g Eutrema salsugineum HOM05D005121 ORTHO05D006115 3.3e-135 485.3 307 75.9
CARHR011610 Cardamine hirsuta HOM05D005121 ORTHO05D006115 5.7e-135 484.6 304 77.0
Sp2g02960 Schrenkiella parvula HOM05D005121 ORTHO05D006115 5.7e-135 484.6 305 76.4
A01p30380 Brassica napus HOM05D005121 ORTHO05D006115 7.5e-135 484.2 306 76.1
C01p38590 Brassica napus HOM05D005121 ORTHO05D006115 7.5e-135 484.2 306 76.1
BraA01t03171Z Brassica rapa HOM05D005121 ORTHO05D006115 7.5e-135 484.2 306 76.1
BcaC06g31855 Brassica carinata HOM05D005121 ORTHO05D006115 3.7e-134 481.9 306 76.1
CDE05G3522 Ceratophyllum demersum HOM05D005121 ORTHO05D006115 6.3e-134 481.1 305 76.7
Carub.0002s0357 Capsella rubella HOM05D005121 ORTHO05D006115 1.4e-133 479.9 307 75.2
CDE02G1411 Ceratophyllum demersum HOM05D005121 ORTHO05D006115 1.8e-133 479.6 305 75.7
ATR1132G047 Amborella trichopoda HOM05D005121 ORTHO05D006115 2.4e-133 479.2 305 76.7
AT1G61620 Arabidopsis thaliana HOM05D005121 ORTHO05D006115 2.0e-132 476.1 307 74.6
Zm00001eb012710 Zea mays HOM05D005121 ORTHO05D006115 4.5e-132 474.9 303 75.6
Zm00001eb397440 Zea mays HOM05D005121 ORTHO05D006115 5.5e-130 468.0 305 75.4
Zm00001eb397450 Zea mays HOM05D005121 ORTHO05D006115 2.3e-128 462.6 304 73.0
Zm00001eb397460 Zea mays HOM05D005121 ORTHO05D006115 2.3e-128 462.6 304 73.0
Zm00001eb397470 Zea mays HOM05D005121 ORTHO05D006115 5.2e-128 461.5 304 73.0
Zm00001eb397480 Zea mays HOM05D005121 ORTHO05D006115 7.5e-127 457.6 304 72.4
Haze_06613 Corylus avellana HOM05D005121 ORTHO05D006115 3.5e-124 448.7 388 60.8
Pp3c9_6940 Physcomitrium patens HOM05D005121 ORTHO05D006115 3.6e-121 438.7 304 69.4
Mapoly0029s0083 Marchantia polymorpha HOM05D005121 ORTHO05D006115 1.1e-117 427.2 306 68.3
Pp3c15_12040 Physcomitrium patens HOM05D005121 ORTHO05D006115 4.1e-117 425.2 304 67.4
Migut.H01530 Erythranthe guttata HOM05D005121 ORTHO05D006115 3.8e-115 418.7 300 68.7
unitig_749.g13632 Utricularia gibba HOM05D005121 ORTHO05D006115 1.2e-113 413.7 305 68.2
SMO147G0402 Selaginella moellendorffii HOM05D005121 ORTHO05D006115 1.0e-112 410.6 302 65.9
Actinidia11821 Actinidia chinensis HOM05D005121 ORTHO05D006115 2.7e-108 396.0 246 78.0
Atru.chr10.2037 Acer truncatum HOM05D005121 ORTHO05D006115 3.7e-102 375.6 235 77.9
AagrBONN_evm.TU.Sc2ySwM_344.3296 Anthoceros agrestis HOM05D005121 ORTHO05D006115 1.1e-101 374.0 303 61.1
Peaxi162Scf00047g00710 Petunia axillaris HOM05D001486 ORTHO05D004921 2.3e-99 366.3 225 77.8
vmacro15854 Vaccinium macrocarpon HOM05D005121 ORTHO05D006115 3.6e-97 359.0 225 78.2
CBR_g4035 Chara braunii HOM05D005121 ORTHO05D006115 1.4e-96 357.1 309 58.3
Ah.09g236300 Amaranthus hybridus HOM05D005121 ORTHO05D006115 9.5e-90 334.3 228 72.8
HPP92_010075 Vanilla planifolia HOM05D005121 ORTHO05D006115 6.2e-89 331.6 210 76.2
HanXRQChr10g0310231 Helianthus annuus HOM05D005121 ORTHO05D006115 4.5e-71 272.3 186 73.1
Cpa.g.sc27.158 Carica papaya HOM05D005121 ORTHO05D006115 8.7e-67 258.1 143 86.7
Peaxi162Scf01035g00217 Petunia axillaris HOM05D005121 ORTHO05D006115 9.6e-66 254.6 181 69.6
BcaB04g20348 Brassica carinata HOM05D005121 ORTHO05D006115 2.8e-65 253.1 149 79.9
BcaB04g20349 Brassica carinata HOM05D005121 ORTHO05D006115 3.3e-58 229.6 154 72.1
Zm00001eb396290 Zea mays HOM05D005121 ORTHO05D006115 1.6e-57 227.3 153 69.9
Sed0008986 Sechium edule HOM05D005121 ORTHO05D006115 2.0e-55 220.3 299 48.2
vmacro15853 Vaccinium macrocarpon HOM05D005121 ORTHO05D006115 2.9e-38 163.3 80 93.8
MCO09G390 Micromonas commoda HOM05D005121 ORTHO05D006115 5.5e-37 159.1 299 34.8
Peaxi162Scf00047g00079 Petunia axillaris HOM05D005121 ORTHO05D006115 7.2e-37 158.7 80 91.2
Ah.14g088780 Amaranthus hybridus HOM05D005121 ORTHO05D006115 1.2e-36 157.9 204 48.5
Ah.09g236480 Amaranthus hybridus HOM05D005121 ORTHO05D006115 6.1e-36 155.6 79 89.9
CARHR260990 Cardamine hirsuta HOM05D005121 ORTHO05D006115 7.9e-36 155.2 125 60.8
BolC1t03821H Brassica oleracea HOM05D005121 ORTHO05D006115 1.0e-35 154.8 80 86.2
ATR1132G008 Amborella trichopoda HOM05D005121 ORTHO05D006115 1.4e-35 154.5 89 79.8
SHI00053 Sapria himalayana HOM05D005121 ORTHO05D006115 1.4e-35 154.5 136 53.7
Cre02.g142086 Chlamydomonas reinhardtii HOM05D005121 ORTHO05D006115 5.1e-35 152.5 306 35.6
TAR628G0944 Trochodendron aralioides HOM05D004330 ORTHO05D005182 8.0e-28 128.6 94 70.2
Lj6g0012970 Lotus japonicus HOM05D003951 ORTHO05D006115 4.8e-25 119.4 58 94.8
Hma1.2p1_0155F.1_g068340 Hydrangea macrophylla HOM05D005121 ORTHO05D006115 8.2e-25 118.6 83 66.3
Atru.chr10.2036 Acer truncatum HOM05D005121 ORTHO05D006115 4.1e-24 116.3 60 90.0
SGA_v2.0_scaffold7G03907 Striga asiatica HOM05D005121 ORTHO05D006115 4.2e-21 106.3 64 78.1
PRCOL_00001084 Prasinoderma coloniale HOM05D005121 ORTHO05D006115 1.4e-16 91.3 296 28.0
TAR626G1242 Trochodendron aralioides HOM05D005121 ORTHO05D006115 2.7e-15 87.0 69 66.7
Cfa022197 Carpinus fangiana HOM05D005121 ORTHO05D006115 1.9e-13 80.9 237 28.3


User provided reference genes

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