Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G19549 Trifolium pratense HOM05D004652 ORTHO05D005634 2.5e-195 685.3 344 100.0
Medtr7g104350 Medicago truncatula HOM05D004652 ORTHO05D005634 2.5e-179 632.1 343 91.0
Psat3g034240 Pisum sativum HOM05D004652 ORTHO05D005634 3.1e-177 625.2 343 89.8
Lj2g0023089 Lotus japonicus HOM05D004652 ORTHO05D005634 3.3e-163 578.6 347 83.0
Phvul.002G017100 Phaseolus vulgaris HOM05D004652 ORTHO05D005634 2.8e-162 575.5 346 82.4
Glyma.11G054000 Glycine max HOM05D004652 ORTHO05D005634 1.4e-161 573.2 345 82.3
arahy.Tifrunner.gnm1.ann1.8Y90C0 Arachis hypogaea HOM05D004652 ORTHO05D005634 2.0e-160 569.3 352 80.1
arahy.Tifrunner.gnm1.ann1.EFTP1R Arachis hypogaea HOM05D004652 ORTHO05D005634 5.8e-160 567.8 352 80.1
Glyma.01G188100 Glycine max HOM05D004652 ORTHO05D005634 5.8e-160 567.8 345 81.2
VMungo1215G2858 Vigna mungo HOM05D004652 ORTHO05D005634 9.9e-160 567.0 346 80.6
CiPaw.01G015800 Carya illinoinensis HOM05D004652 ORTHO05D005634 1.1e-150 537.0 343 75.5
CiPaw.01G015500 Carya illinoinensis HOM05D004652 ORTHO05D005634 1.9e-150 536.2 343 74.9
Lalb_Chr05g0213341 Lupinus albus HOM05D004652 ORTHO05D005634 2.4e-150 535.8 343 77.0
Dinv30009 Davidia involucrata HOM05D004652 ORTHO05D005634 7.1e-150 534.3 343 74.9
RcHm_v2.0_Chr2g0106191 Rosa chinensis HOM05D004652 ORTHO05D005634 6.6e-148 527.7 341 76.0
FvH4_1g16330 Fragaria vesca HOM05D004652 ORTHO05D005634 1.5e-147 526.6 343 74.6
FAN19G0057 Fragaria x ananassa HOM05D004652 ORTHO05D005634 5.6e-147 524.6 343 74.3
MD02G1175800 Malus domestica HOM05D004652 ORTHO05D005634 5.6e-147 524.6 343 74.9
CANSAT25G2702 Cannabis sativa HOM05D004652 ORTHO05D005634 7.3e-147 524.2 343 73.5
FAN23G0595 Fragaria x ananassa HOM05D004652 ORTHO05D005634 6.2e-146 521.2 343 73.5
QL06p040720 Quercus lobata HOM05D004652 ORTHO05D005634 2.4e-145 519.2 344 73.3
CsaV3_2G016420 Cucumis sativus L. HOM05D004652 ORTHO05D005634 1.5e-144 516.5 343 70.8
MELO3C020851.2 Cucumis melo HOM05D004652 ORTHO05D005634 2.0e-144 516.2 343 70.6
Actinidia36476 Actinidia chinensis HOM05D004652 ORTHO05D005634 4.4e-144 515.0 343 71.4
Nn5g30355 Nelumbo nucifera HOM05D004652 ORTHO05D005634 1.7e-143 513.1 344 73.5
FAN28G0632 Fragaria x ananassa HOM05D004652 ORTHO05D005634 8.4e-143 510.8 347 72.6
GSVIVG01022087001 Vitis vinifera HOM05D004652 ORTHO05D005634 8.4e-143 510.8 344 71.5
Haze_15373 Corylus avellana HOM05D004652 ORTHO05D005634 1.4e-142 510.0 373 67.3
Lj7A73G20 Lonicera japonica HOM05D004652 ORTHO05D005634 1.0e-140 503.8 304 76.6
CSS0025726 Camellia sinensis var. sinensis HOM05D004652 ORTHO05D005634 3.0e-140 502.3 345 70.7
GSVIVG01031712001 Vitis vinifera HOM05D004652 ORTHO05D005634 5.1e-140 501.5 313 77.6
Peaxi162Scf00549g00023 Petunia axillaris HOM05D004652 ORTHO05D005634 6.6e-140 501.1 343 71.1
Atru.chr5.2643 Acer truncatum HOM05D004652 ORTHO05D005634 1.1e-139 500.4 313 78.0
Atru.chr5.2649 Acer truncatum HOM05D004652 ORTHO05D005634 1.1e-139 500.4 313 78.0
Hma1.2p1_0670F.1_g200440 Hydrangea macrophylla HOM05D004652 ORTHO05D005634 1.9e-139 499.6 347 70.6
Actinidia12037 Actinidia chinensis HOM05D004652 ORTHO05D005634 2.1e-138 496.1 372 65.9
Manes.13G121100 Manihot esculenta HOM05D004652 ORTHO05D005634 3.6e-138 495.4 345 71.0
Sed0013827 Sechium edule HOM05D004652 ORTHO05D005634 6.2e-138 494.6 340 68.8
Cc07_g06170 Coffea canephora HOM05D004652 ORTHO05D005634 1.1e-137 493.8 343 68.8
PGR102G1991 Punica granatum HOM05D004652 ORTHO05D005634 1.4e-137 493.4 343 69.4
Gorai.013G045700 Gossypium raimondii HOM05D004652 ORTHO05D005634 2.4e-137 492.7 309 76.7
MSTRG.23735 Avicennia marina HOM05D004652 ORTHO05D005634 3.1e-137 492.3 343 70.0
Gohir.A13G042200 Gossypium hirsutum HOM05D004652 ORTHO05D005634 4.0e-137 491.9 309 76.1
Nitab4.5_0001221g0030 Nicotiana tabacum HOM05D004652 ORTHO05D005634 2.0e-136 489.6 343 70.3
Potri.007G045900 Populus trichocarpa HOM05D004652 ORTHO05D005634 2.0e-136 489.6 343 69.7
Solyc02g093170.4 Solanum lycopersicum HOM05D004652 ORTHO05D005634 3.4e-136 488.8 343 68.2
Sopen02g037740 Solanum pennellii HOM05D004652 ORTHO05D005634 3.4e-136 488.8 343 68.5
Duzib132G1249 Durio zibethinus HOM05D004652 ORTHO05D005634 7.6e-136 487.6 309 76.4
Aqoxy6G01262 Aquilegia oxysepala HOM05D004652 ORTHO05D005634 9.9e-136 487.3 337 70.3
PGSC0003DMG400004028 Solanum tuberosum HOM05D004652 ORTHO05D005634 9.9e-136 487.3 344 68.6
Duzib147G0331 Durio zibethinus HOM05D004652 ORTHO05D005634 1.7e-135 486.5 336 70.2
Cpa.g.sc55.119 Carica papaya HOM05D004652 ORTHO05D005634 2.9e-135 485.7 341 68.9
TWI09G0879 Tripterygium wilfordii HOM05D004652 ORTHO05D005634 2.9e-135 485.7 349 68.8
Sabra09G0075900 Salix brachista HOM05D004652 ORTHO05D005634 8.4e-135 484.2 307 75.6
PSO675G7477 Papaver somniferum HOM05D004652 ORTHO05D005634 1.4e-134 483.4 359 64.6
CSS0033708 Camellia sinensis var. sinensis HOM05D004652 ORTHO05D005634 1.9e-134 483.0 330 70.0
Potri.009G099600 Populus trichocarpa HOM05D004652 ORTHO05D005634 2.4e-134 482.6 308 74.7
TWI31G1310 Tripterygium wilfordii HOM05D004652 ORTHO05D005634 2.4e-134 482.6 304 75.0
Nitab4.5_0002765g0060 Nicotiana tabacum HOM05D004652 ORTHO05D005634 3.2e-134 482.3 347 69.5
Ciclev10025986m.g Citrus clementina HOM05D004652 ORTHO05D005634 7.1e-134 481.1 349 69.6
Ciclev10030127m.g Citrus clementina HOM05D004652 ORTHO05D005634 7.1e-134 481.1 309 73.8
Thecc.02G103600 Theobroma cacao HOM05D004652 ORTHO05D005634 9.3e-134 480.7 309 75.7
Migut.H00415 Erythranthe guttata HOM05D004652 ORTHO05D005634 6.0e-133 478.0 343 67.1
Thecc.01G060000 Theobroma cacao HOM05D004652 ORTHO05D005634 6.0e-133 478.0 302 74.5
AUR62013234 Chenopodium quinoa HOM05D004652 ORTHO05D005634 7.9e-133 477.6 338 70.4
ECA232G0198 Erigeron canadensis HOM05D004652 ORTHO05D005634 1.3e-132 476.9 319 72.4
Lsat_1_v5_gn_4_165120 Lactuca sativa HOM05D004652 ORTHO05D005634 3.0e-132 475.7 340 69.1
Eucgr.I01131 Eucalyptus grandis HOM05D004652 ORTHO05D005634 5.1e-132 474.9 316 73.4
DCAR_010876 Daucus carota HOM05D004652 ORTHO05D005634 3.3e-131 472.2 350 67.1
Gorai.007G215700 Gossypium raimondii HOM05D004652 ORTHO05D005634 1.6e-130 469.9 317 72.2
HanXRQChr15g0490761 Helianthus annuus HOM05D004652 ORTHO05D005634 2.8e-130 469.2 344 68.0
THA.LOC104807263 Tarenaya hassleriana HOM05D004652 ORTHO05D005634 3.7e-130 468.8 322 72.0
Gohir.A11G195100 Gossypium hirsutum HOM05D004652 ORTHO05D005634 2.0e-128 463.0 306 72.5
Ca_08994_v3 Cicer arietinum L. HOM05D004652 ORTHO05D005634 4.9e-127 458.4 344 71.2
Sabra07G0041100 Salix brachista HOM05D004652 ORTHO05D005634 4.9e-127 458.4 378 61.4
EL10Ac9g22324 Beta vulgaris HOM05D004652 ORTHO05D005634 5.5e-126 454.9 348 65.8
unitig_736.g22389 Utricularia gibba HOM05D004652 ORTHO05D005634 5.5e-126 454.9 344 63.7
CDE02G2369 Ceratophyllum demersum HOM05D004652 ORTHO05D005634 2.7e-125 452.6 327 68.2
Thhalv10025679m.g Eutrema salsugineum HOM05D004652 ORTHO05D005634 6.0e-125 451.4 314 71.0
Carub.0007s0633 Capsella rubella HOM05D004652 ORTHO05D005634 3.0e-124 449.1 318 70.8
AL7G17310 Arabidopsis lyrata HOM05D004652 ORTHO05D005634 1.9e-123 446.4 313 71.6
Sp7g31800 Schrenkiella parvula HOM05D004652 ORTHO05D005634 1.9e-123 446.4 314 70.7
BcaNung03359 Brassica carinata HOM05D004652 ORTHO05D005634 2.5e-123 446.0 313 70.9
Sc07g0000730 Simmondsia chinensis HOM05D004652 ORTHO05D005634 3.3e-123 445.7 340 63.5
AT4G34090 Arabidopsis thaliana HOM05D004652 ORTHO05D005634 4.3e-123 445.3 313 70.6
Atru.chr3.293 Acer truncatum HOM05D004652 ORTHO05D005634 5.7e-123 444.9 349 63.3
Aa31LG2G16510 Aethionema arabicum HOM05D002471 ORTHO05D003712 1.3e-122 443.7 306 71.9
CARHR242200 Cardamine hirsuta HOM05D004652 ORTHO05D005634 2.8e-122 442.6 314 69.4
Ah.01g017900 Amaranthus hybridus HOM05D004652 ORTHO05D005634 3.7e-122 442.2 279 74.9
Hund13540 Selenicereus undatus HOM05D004652 ORTHO05D005634 1.1e-121 440.7 309 66.7
SGA_v2.0_scaffold143G35809 Striga asiatica HOM05D004652 ORTHO05D005634 3.1e-121 439.1 277 73.3
vmacro05311 Vaccinium macrocarpon HOM05D004652 ORTHO05D005634 3.1e-121 439.1 342 64.3
Oeu049898.1 Olea europaea HOM05D004652 ORTHO05D005634 6.9e-121 438.0 304 72.0
AUR62010252 Chenopodium quinoa HOM05D004652 ORTHO05D005634 1.0e-119 434.1 277 75.5
Os03g0109700 Oryza sativa ssp. japonica HOM05D004652 ORTHO05D005634 2.2e-119 433.0 327 63.0
HPP92_024094 Vanilla planifolia HOM05D004652 ORTHO05D005634 2.2e-119 433.0 308 67.9
Prupe.6G231900 Prunus persica HOM05D004652 ORTHO05D005634 5.0e-119 431.8 292 73.3
Gohir.D11G201200 Gossypium hirsutum HOM05D004652 ORTHO05D005634 1.9e-118 429.9 282 73.4
PSO541G5706 Papaver somniferum HOM05D004652 ORTHO05D005634 3.2e-118 429.1 359 59.1
SGA_v2.0_scaffold34G13618 Striga asiatica HOM05D004652 ORTHO05D005634 5.5e-118 428.3 281 72.6
Eucgr.H01690 Eucalyptus grandis HOM05D004652 ORTHO05D005634 7.2e-118 427.9 306 65.0
ATR0724G029 Amborella trichopoda HOM05D004652 ORTHO05D005634 9.3e-118 427.6 322 64.0
THA.LOC104807591 Tarenaya hassleriana HOM05D004652 ORTHO05D005634 9.3e-118 427.6 319 64.9
AT2G23370 Arabidopsis thaliana HOM05D004652 ORTHO05D005634 7.9e-117 424.5 311 64.6
Rhsim10G0114700 Rhododendron simsii HOM05D004652 ORTHO05D005634 1.9e-115 419.9 307 67.8
AL4G13280 Arabidopsis lyrata HOM05D004652 ORTHO05D005634 2.5e-115 419.5 341 60.4
CARHR293000 Cardamine hirsuta HOM05D004652 ORTHO05D005634 3.3e-115 419.1 341 60.1
BolC8t51563H Brassica oleracea HOM05D004652 ORTHO05D005634 4.3e-115 418.7 341 60.1
Sp4g02380 Schrenkiella parvula HOM05D004652 ORTHO05D005634 7.4e-115 417.9 312 63.5
Carub.0004s0257 Capsella rubella HOM05D004652 ORTHO05D005634 3.7e-114 415.6 343 59.8
BcaC07g40988 Brassica carinata HOM05D004652 ORTHO05D005634 6.3e-114 414.8 341 59.8
C08p39900 Brassica napus HOM05D004652 ORTHO05D005634 6.3e-114 414.8 341 59.8
A09p56940 Brassica napus HOM05D004652 ORTHO05D005634 2.4e-113 412.9 341 59.2
BraA09t41086Z Brassica rapa HOM05D004652 ORTHO05D005634 7.7e-112 407.9 341 58.7
AUR62001905 Chenopodium quinoa HOM05D004652 ORTHO05D005634 1.4e-110 403.7 310 61.3
Zm00001eb404220 Zea mays HOM05D004652 ORTHO05D005634 4.2e-110 402.1 315 61.9
Hund00119 Selenicereus undatus HOM05D004652 ORTHO05D005634 4.6e-109 398.7 309 67.0
BolC7t46455H Brassica oleracea HOM05D004652 ORTHO05D005634 1.0e-108 397.5 316 66.5
BraA03t15329Z Brassica rapa HOM05D004652 ORTHO05D005634 4.3e-107 392.1 306 67.0
ClCG02G012270 Citrullus lanatus HOM05D004652 ORTHO05D005634 2.2e-106 389.8 260 71.2
Aa31LG7G13600 Aethionema arabicum HOM05D004652 ORTHO05D005634 1.1e-105 387.5 383 53.3
C07p60150 Brassica napus HOM05D004652 ORTHO05D005634 9.1e-105 384.4 343 61.2
A03p62590 Brassica napus HOM05D004652 ORTHO05D005634 7.7e-104 381.3 343 60.6
SMO367G0761 Selaginella moellendorffii HOM05D004652 ORTHO05D005634 3.6e-101 372.5 306 57.8
AUR62003906 Chenopodium quinoa HOM05D004652 ORTHO05D005634 3.0e-100 369.4 282 61.3
Cpa.g.sc200.27 Carica papaya HOM05D004652 ORTHO05D005634 6.7e-100 368.2 325 59.7
COL.COLO4_24563 Corchorus olitorius HOM05D004652 ORTHO05D005634 7.4e-99 364.8 250 69.2
Mapoly0032s0004 Marchantia polymorpha HOM05D004652 ORTHO05D005634 9.7e-99 364.4 312 55.4
Pp3c4_13980 Physcomitrium patens HOM05D004652 ORTHO05D005634 1.4e-97 360.5 309 55.3
COL.COLO4_32629 Corchorus olitorius HOM05D004652 ORTHO05D005634 4.5e-96 355.5 319 60.2
Pp3c13_18360 Physcomitrium patens HOM05D004652 ORTHO05D005634 7.2e-94 348.2 309 53.7
Thhalv10000243m.g Eutrema salsugineum HOM05D004652 ORTHO05D005634 2.1e-93 346.7 323 54.2
AagrBONN_evm.TU.Sc2ySwM_362.2895 Anthoceros agrestis HOM05D004652 ORTHO05D005634 1.7e-90 337.0 331 52.3
CBR_g34458 Chara braunii HOM05D004652 ORTHO05D005634 7.7e-88 328.2 361 48.8
EL10Ac6g15724 Beta vulgaris HOM05D004652 ORTHO05D005634 3.8e-87 325.9 235 64.7
Gohir.D13G040700 Gossypium hirsutum HOM05D004652 ORTHO05D005634 1.4e-84 317.4 216 71.3
Oeu004436.1 Olea europaea HOM05D004652 ORTHO05D005634 7.0e-81 305.1 316 55.4
Eucgr.I01132 Eucalyptus grandis HOM05D004652 ORTHO05D005634 2.7e-80 303.1 203 71.9
Ah.02g125990 Amaranthus hybridus HOM05D004652 ORTHO05D005634 4.2e-78 295.8 284 52.1
FAN26G0096 Fragaria x ananassa HOM05D004652 ORTHO05D005634 1.4e-76 290.8 162 82.1
TAR381G1258 Trochodendron aralioides HOM05D004652 ORTHO05D005634 5.6e-70 268.9 203 66.5
SEGI_25477 Sequoiadendron giganteum HOM05D004652 ORTHO05D005634 2.6e-59 233.4 163 65.0
SEGI_26044 Sequoiadendron giganteum HOM05D004652 ORTHO05D005634 2.6e-59 233.4 163 65.0
Aqoxy2G01254 Aquilegia oxysepala HOM05D004652 ORTHO05D005634 7.0e-57 225.3 138 75.4
TAR381G1342 Trochodendron aralioides HOM05D004652 ORTHO05D005634 1.1e-46 191.4 111 80.2
Cre13.g563150 Chlamydomonas reinhardtii HOM05D004652 ORTHO05D005634 2.0e-43 180.6 338 32.2
Aqoxy4G02413 Aquilegia oxysepala HOM05D004652 ORTHO05D005634 1.3e-42 177.9 112 75.0
ECA248G0229 Erigeron canadensis HOM05D004652 ORTHO05D005634 5.4e-41 172.6 228 45.6
PRCOL_00001748 Prasinoderma coloniale HOM05D004652 ORTHO05D005634 4.3e-38 162.9 312 34.6
MCO15G669 Micromonas commoda HOM05D004652 ORTHO05D005634 8.9e-36 155.2 319 32.3
Potri.001G304401 Populus trichocarpa HOM05D004652 ORTHO05D005634 3.8e-34 149.8 129 58.9
TAR381G1519 Trochodendron aralioides HOM05D004652 ORTHO05D005634 6.4e-34 149.1 163 50.3
Lalb_Chr09g0323281 Lupinus albus HOM05D004652 ORTHO05D005634 1.3e-26 124.8 179 44.1
MCO09G010 Micromonas commoda HOM05D004652 ORTHO05D005634 1.5e-22 111.3 232 33.6
Sabra07G0040900 Salix brachista HOM05D015619 ORTHO05D009044 2.1e-21 107.5 83 60.2
CDE01G0594 Ceratophyllum demersum HOM05D000934 ORTHO05D000746 8.4e-18 95.5 105 46.7
Cc00_g07740 Coffea canephora HOM05D004652 ORTHO05D005634 2.4e-17 94.0 279 27.2


User provided reference genes

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