Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G19494 Trifolium pratense HOM05D006253 ORTHO05D007666 2.0e-178 629.0 327 100.0
TPR.G19178 Trifolium pratense HOM05D006253 ORTHO05D007666 3.5e-82 309.3 175 94.9
Ca_15796_v3 Cicer arietinum L. HOM05D006253 ORTHO05D007666 1.3e-73 280.8 170 87.6
Ca_30406_v3 Cicer arietinum L. HOM05D006253 ORTHO05D007666 1.3e-73 280.8 170 87.6
Ca_01013_v3 Cicer arietinum L. HOM05D006253 ORTHO05D007666 1.8e-73 280.4 171 86.5
VMungo1080G0444 Vigna mungo HOM05D006253 ORTHO05D007666 2.3e-73 280.0 191 79.1
Lj6g0019810 Lotus japonicus HOM05D006253 ORTHO05D007666 3.0e-73 279.6 171 86.5
arahy.Tifrunner.gnm1.ann1.ETD7FQ Arachis hypogaea HOM05D006253 ORTHO05D007666 5.1e-73 278.9 181 82.3
Glyma.04G194000 Glycine max HOM05D006253 ORTHO05D007666 2.8e-71 273.1 169 86.4
Lalb_Chr25g0286231 Lupinus albus HOM05D006253 ORTHO05D007666 4.8e-71 272.3 171 83.6
Phvul.005G182700 Phaseolus vulgaris HOM05D006253 ORTHO05D007666 2.4e-70 270.0 169 84.0
Potri.004G141400 Populus trichocarpa HOM05D006253 ORTHO05D007666 4.0e-70 269.2 169 82.2
arahy.Tifrunner.gnm1.ann1.AJN977 Arachis hypogaea HOM05D006253 ORTHO05D007666 6.9e-70 268.5 181 80.1
arahy.Tifrunner.gnm1.ann1.5N1458 Arachis hypogaea HOM05D006253 ORTHO05D007666 1.2e-69 267.7 202 74.3
Sabra04G0093200 Salix brachista HOM05D006253 ORTHO05D007666 4.5e-69 265.8 169 81.7
Thecc.02G100600 Theobroma cacao HOM05D006253 ORTHO05D007666 1.3e-68 264.2 171 79.5
Gohir.A01G006900 Gossypium hirsutum HOM05D006253 ORTHO05D007666 3.8e-68 262.7 171 79.5
Gorai.002G008000 Gossypium raimondii HOM05D006253 ORTHO05D007666 6.5e-68 261.9 171 79.5
QL11p035967 Quercus lobata HOM05D006253 ORTHO05D007666 6.5e-68 261.9 168 82.7
Gohir.D01G007000 Gossypium hirsutum HOM05D006253 ORTHO05D007666 1.1e-67 261.2 171 78.9
RcHm_v2.0_Chr6g0257111 Rosa chinensis HOM05D006253 ORTHO05D007666 1.4e-67 260.8 173 82.7
TAR376G0695 Trochodendron aralioides HOM05D006253 ORTHO05D007666 1.9e-67 260.4 163 83.4
Manes.01G064000 Manihot esculenta HOM05D006253 ORTHO05D007666 3.2e-67 259.6 165 81.2
CiPaw.05G006400 Carya illinoinensis HOM05D006253 ORTHO05D007666 4.2e-67 259.2 163 81.6
Medtr8g099835 Medicago truncatula HOM05D006253 ORTHO05D007666 7.1e-67 258.5 148 92.6
COL.COLO4_32658 Corchorus olitorius HOM05D006253 ORTHO05D007666 9.3e-67 258.1 165 80.6
Nn5g30328 Nelumbo nucifera HOM05D006253 ORTHO05D007666 9.3e-67 258.1 163 82.8
Prupe.8G124200 Prunus persica HOM05D006253 ORTHO05D007666 2.7e-66 256.5 170 81.2
Actinidia12952 Actinidia chinensis HOM05D006253 ORTHO05D007666 3.5e-66 256.1 163 82.2
FvH4_2g06110 Fragaria vesca HOM05D006253 ORTHO05D007666 4.6e-66 255.8 173 79.8
FAN24G2487 Fragaria x ananassa HOM05D006253 ORTHO05D007666 4.6e-66 255.8 173 79.8
arahy.Tifrunner.gnm1.ann1.1E2X9I Arachis hypogaea HOM05D006253 ORTHO05D007666 6.0e-66 255.4 149 87.9
Ciclev10029390m.g Citrus clementina HOM05D006253 ORTHO05D007666 1.8e-65 253.8 174 76.4
FAN27G3246 Fragaria x ananassa HOM05D006253 ORTHO05D007666 2.3e-65 253.4 179 78.2
GSVIVG01031749001 Vitis vinifera HOM05D006253 ORTHO05D007666 3.0e-65 253.1 171 77.8
Hma1.2p1_0370F.1_g137800 Hydrangea macrophylla HOM05D006253 ORTHO05D007666 5.1e-65 252.3 163 81.6
Lj5C209T13 Lonicera japonica HOM05D006253 ORTHO05D007666 8.7e-65 251.5 163 80.4
MD05G1080500 Malus domestica HOM05D006253 ORTHO05D007666 1.1e-64 251.1 170 80.6
Rhsim03G0192100 Rhododendron simsii HOM05D006253 ORTHO05D007666 1.5e-64 250.8 163 82.2
HanXRQChr16g0501301 Helianthus annuus HOM05D006253 ORTHO05D007666 3.3e-64 249.6 194 70.1
Sed0027718 Sechium edule HOM05D006253 ORTHO05D007666 3.3e-64 249.6 171 77.2
CANSAT25G0326 Cannabis sativa HOM05D006253 ORTHO05D007666 5.7e-64 248.8 171 77.8
Sc14g0002650 Simmondsia chinensis HOM05D006253 ORTHO05D007666 5.7e-64 248.8 163 79.1
Eucgr.I01155 Eucalyptus grandis HOM05D006253 ORTHO05D007666 1.6e-63 247.3 162 80.9
MELO3C019508.2 Cucumis melo HOM05D006253 ORTHO05D007666 2.8e-63 246.5 163 79.8
PGR142G1116 Punica granatum HOM05D006253 ORTHO05D007666 2.8e-63 246.5 165 77.6
CANSAT35G0887 Cannabis sativa HOM05D006253 ORTHO05D007666 4.8e-63 245.7 171 77.2
Psat5g098280 Pisum sativum HOM05D006253 ORTHO05D007666 1.1e-62 244.6 143 89.5
TWI79G0152 Tripterygium wilfordii HOM05D006253 ORTHO05D007666 1.1e-62 244.6 174 74.7
CsaV3_3G018580 Cucumis sativus L. HOM05D006253 ORTHO05D007666 5.3e-62 242.3 164 77.4
PGSC0003DMG400025894 Solanum tuberosum HOM05D006253 ORTHO05D007666 5.3e-62 242.3 168 78.0
CAN.G1041.15 Capsicum annuum HOM05D006253 ORTHO05D007666 6.9e-62 241.9 168 78.0
Lsat_1_v5_gn_5_112681 Lactuca sativa HOM05D006253 ORTHO05D007666 6.9e-62 241.9 240 59.2
Oeu010588.1 Olea europaea HOM05D006253 ORTHO05D007666 6.9e-62 241.9 169 75.1
ECA234G4670 Erigeron canadensis HOM05D006253 ORTHO05D007666 9.0e-62 241.5 165 76.4
Sopen01g050480 Solanum pennellii HOM05D006253 ORTHO05D007666 1.2e-61 241.1 168 77.4
Rhsim05G0084000 Rhododendron simsii HOM05D006253 ORTHO05D007666 1.5e-61 240.7 172 76.7
SGA_v2.0_scaffold22G09667 Striga asiatica HOM05D006253 ORTHO05D007666 3.4e-61 239.6 168 77.4
PSO782G1871 Papaver somniferum HOM05D006253 ORTHO05D007666 5.8e-61 238.8 165 79.4
Duzib052G0633 Durio zibethinus HOM05D006253 ORTHO05D007666 7.6e-61 238.4 143 84.6
THA.LOC104807358 Tarenaya hassleriana HOM05D006253 ORTHO05D007666 7.6e-61 238.4 171 72.5
MSTRG.27724 Avicennia marina HOM05D006253 ORTHO05D007666 8.4e-60 235.0 168 75.0
HPP92_001047 Vanilla planifolia HOM05D006253 ORTHO05D007666 1.6e-58 230.7 168 73.2
Glyma.06G172100 Glycine max HOM05D006253 ORTHO05D007666 4.6e-58 229.2 142 84.5
Os01g0142200 Oryza sativa ssp. japonica HOM05D006253 ORTHO05D007666 4.6e-58 229.2 162 73.5
EL10Ac5g11497 Beta vulgaris HOM05D006253 ORTHO05D007666 6.1e-58 228.8 162 72.8
BraA03t15367Z Brassica rapa HOM05D006253 ORTHO05D007666 5.1e-57 225.7 166 72.3
AL7G16840 Arabidopsis lyrata HOM05D006253 ORTHO05D007666 1.1e-56 224.6 163 73.0
AT4G34412 Arabidopsis thaliana HOM05D006253 ORTHO05D007666 1.1e-56 224.6 163 73.0
PSO478G4849 Papaver somniferum HOM05D006253 ORTHO05D007666 1.5e-56 224.2 143 83.2
Sp7g32200 Schrenkiella parvula HOM05D006253 ORTHO05D007666 2.5e-56 223.4 163 72.4
BcaNung06978 Brassica carinata HOM05D006253 ORTHO05D007666 3.3e-56 223.0 165 70.9
CARHR242350 Cardamine hirsuta HOM05D006253 ORTHO05D007666 3.3e-56 223.0 163 71.8
C07p60590 Brassica napus HOM05D006253 ORTHO05D007666 4.3e-56 222.6 163 72.4
Thhalv10026394m.g Eutrema salsugineum HOM05D006253 ORTHO05D007666 4.3e-56 222.6 163 71.8
HanXRQChr10g0319791 Helianthus annuus HOM05D006253 ORTHO05D007666 4.3e-56 222.6 150 78.7
MBI02_g02992_MAGBIO Magnolia biondii HOM05D006253 ORTHO05D007666 5.7e-56 222.2 143 80.4
Zm00001eb124670 Zea mays HOM05D006253 ORTHO05D007666 5.7e-56 222.2 163 71.2
A01p04020 Brassica napus HOM05D006253 ORTHO05D007666 1.3e-55 221.1 163 71.8
Carub.0007s0590 Capsella rubella HOM05D006253 ORTHO05D007666 1.6e-55 220.7 163 70.6
Solyc01g108260.4 Solanum lycopersicum HOM05D006253 ORTHO05D007666 3.7e-55 219.5 148 78.4
Atru.chr5.2705 Acer truncatum HOM05D006253 ORTHO05D007666 1.8e-54 217.2 181 70.2
Aa31LG2G16330 Aethionema arabicum HOM05D006253 ORTHO05D007666 3.1e-54 216.5 163 71.2
DCAR_007862 Daucus carota HOM05D006253 ORTHO05D007666 1.0e-52 211.5 143 78.3
AagrBONN_evm.TU.Sc2ySwM_344.4457 Anthoceros agrestis HOM05D006253 ORTHO05D007666 1.3e-52 211.1 173 61.8
BolC7t46489H Brassica oleracea HOM05D003825 ORTHO05D004491 5.5e-51 205.7 149 73.2
CSS0003209 Camellia sinensis var. sinensis HOM05D006253 ORTHO05D007666 9.4e-51 204.9 140 76.4
FAN20G2826 Fragaria x ananassa HOM05D006253 ORTHO05D007666 1.2e-50 204.5 171 67.8
Mapoly0083s0082 Marchantia polymorpha HOM05D006253 ORTHO05D007666 2.7e-50 203.4 162 63.6
Pp3c22_3990 Physcomitrium patens HOM05D006253 ORTHO05D007666 3.9e-49 199.5 162 61.1
CDE08G0295 Ceratophyllum demersum HOM05D006253 ORTHO05D007666 3.3e-48 196.4 141 74.5
Sed0021593 Sechium edule HOM05D006253 ORTHO05D007666 3.3e-48 196.4 171 64.3
SMO351G0094 Selaginella moellendorffii HOM05D006253 ORTHO05D007666 1.8e-46 190.7 166 60.8
Hund00335 Selenicereus undatus HOM05D006253 ORTHO05D007666 9.1e-46 188.3 164 65.9
Phvul.002G266500 Phaseolus vulgaris HOM05D006253 ORTHO05D007666 8.5e-44 181.8 109 85.3
FAN15G3440 Fragaria x ananassa HOM05D006253 ORTHO05D007666 2.5e-43 180.3 171 62.6
Medtr2g105210 Medicago truncatula HOM05D006253 ORTHO05D007666 5.7e-40 169.1 123 75.6
CBR_g38557 Chara braunii HOM05D006253 ORTHO05D007666 9.7e-40 168.3 162 54.3
AUR62029937 Chenopodium quinoa HOM05D006253 ORTHO05D007666 2.8e-39 166.8 126 69.8
CSS0033941 Camellia sinensis var. sinensis HOM05D006253 ORTHO05D007666 1.0e-36 158.3 138 68.1
SEGI_00233 Sequoiadendron giganteum HOM05D006253 ORTHO05D007666 1.3e-36 157.9 112 70.5
AUR62033746 Chenopodium quinoa HOM05D006253 ORTHO05D007666 2.9e-36 156.8 143 61.5
BolC1t00422H Brassica oleracea HOM05D006253 ORTHO05D007666 6.7e-33 145.6 107 72.9
MD10G1094500 Malus domestica HOM05D006253 ORTHO05D007666 8.8e-33 145.2 125 64.8
C01p04340 Brassica napus HOM05D006253 ORTHO05D007666 1.2e-29 134.8 99 71.7
Cc02_g18770 Coffea canephora HOM05D006253 ORTHO05D007666 3.5e-29 133.3 88 76.1
vmacro19500 Vaccinium macrocarpon HOM05D006253 ORTHO05D007666 4.2e-27 126.3 163 53.4
Prupe.4G258000 Prunus persica HOM05D006253 ORTHO05D007666 9.4e-27 125.2 111 61.3
SalBow3G2580 Salvia bowleyana HOM05D006253 ORTHO05D007666 9.4e-27 125.2 119 60.5
MCO10G211 Micromonas commoda HOM05D006253 ORTHO05D007666 2.1e-26 124.0 160 44.4
vmacro06019 Vaccinium macrocarpon HOM05D006253 ORTHO05D007666 2.1e-26 124.0 94 74.5
Prupe.6G016400 Prunus persica HOM05D006253 ORTHO05D007666 2.7e-26 123.6 128 56.2
Ah.10g034240 Amaranthus hybridus HOM05D006253 ORTHO05D007666 4.0e-25 119.8 85 72.9
Cre01.g030950 Chlamydomonas reinhardtii HOM05D006253 ORTHO05D007666 4.4e-24 116.3 162 39.5
Sabra09G0078100 Salix brachista HOM05D006253 ORTHO05D007666 2.4e-22 110.5 85 71.8
A03p62890 Brassica napus HOM05D000211 ORTHO05D007666 3.5e-21 106.7 86 67.4
PRCOL_00001305 Prasinoderma coloniale HOM05D006253 ORTHO05D007666 1.7e-20 104.4 169 40.2
Hma1.2p1_0804F.1_g221060 Hydrangea macrophylla HOM05D006253 ORTHO05D007666 2.2e-20 104.0 71 78.9
Gorai.005G238200 Gossypium raimondii HOM05D006253 ORTHO05D007666 4.7e-18 96.3 104 53.8
Hma1.2p1_0674F.1_g201500 Hydrangea macrophylla HOM05D006253 ORTHO05D007666 2.8e-15 87.0 57 80.7
TPR.G19487 Trifolium pratense HOM05D000372 ORTHO05D004502 4.9e-15 86.3 59 71.2
ClCG05G009990 Citrullus lanatus HOM05D006253 ORTHO05D007666 3.1e-14 83.6 120 48.3
Migut.N01188 Erythranthe guttata HOM05D006253 ORTHO05D007666 5.9e-13 79.3 54 79.6
Prupe.4G259300 Prunus persica HOM05D006253 ORTHO05D007666 1.3e-12 78.2 86 52.3
Aqoxy5G01240 Aquilegia oxysepala HOM05D006253 ORTHO05D007666 2.3e-12 77.4 57 68.4
Prupe.2G172700 Prunus persica HOM05D006253 ORTHO05D007666 2.3e-12 77.4 51 76.5
Gohir.D02G210201 Gossypium hirsutum HOM05D006253 ORTHO05D007666 1.9e-11 74.3 104 46.2
Oeu025576.2 Olea europaea HOM05D006253 ORTHO05D007666 7.2e-11 72.4 63 63.5
SEGI_00525 Sequoiadendron giganteum HOM05D006253 ORTHO05D007666 5.2e-09 66.2 57 59.6
Migut.N01189 Erythranthe guttata HOM05D006253 ORTHO05D007666 6.4e-07 59.3 42 69.0
Medtr8g075340 Medicago truncatula HOM05D000372 ORTHO05D004502 6.4e-07 59.3 39 69.2


User provided reference genes

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