Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G19434 Trifolium pratense HOM05D004519 ORTHO05D006283 3.5e-261 904.4 463 100.0
Psat2g139000 Pisum sativum HOM05D004519 ORTHO05D006283 4.2e-222 774.6 465 86.5
Medtr5g029230 Medicago truncatula HOM05D004519 ORTHO05D006283 3.8e-207 724.9 458 82.3
Ca_25177_v3 Cicer arietinum L. HOM05D004519 ORTHO05D006283 4.1e-193 678.3 363 90.1
Glyma.01G014200 Glycine max HOM05D004519 ORTHO05D006283 2.6e-187 659.1 461 74.0
Lj4g0001331 Lotus japonicus HOM05D004519 ORTHO05D006283 5.7e-187 657.9 468 71.2
Lalb_Chr09g0325481 Lupinus albus HOM05D004519 ORTHO05D006283 5.4e-185 651.4 468 71.6
VMungo1215G0394 Vigna mungo HOM05D004519 ORTHO05D006283 1.6e-184 649.8 471 72.0
Glyma.09G207900 Glycine max HOM05D004519 ORTHO05D006283 1.2e-181 640.2 392 79.1
Phvul.002G136600 Phaseolus vulgaris HOM05D004519 ORTHO05D006283 8.8e-180 634.0 402 77.9
Lalb_Chr16g0381061 Lupinus albus HOM05D004519 ORTHO05D006283 4.1e-177 625.2 372 79.6
GSVIVG01013060001 Vitis vinifera HOM05D004519 ORTHO05D006283 9.2e-161 570.9 440 64.3
PGR042G1943 Punica granatum HOM05D004519 ORTHO05D006283 1.6e-160 570.1 366 71.6
RcHm_v2.0_Chr7g0211781 Rosa chinensis HOM05D004519 ORTHO05D006283 2.0e-160 569.7 412 67.5
CiPaw.12G068400 Carya illinoinensis HOM05D004519 ORTHO05D006283 4.6e-160 568.5 365 74.5
CiPaw.11G098500 Carya illinoinensis HOM05D004519 ORTHO05D006283 1.0e-159 567.4 364 75.3
FvH4_5g23060 Fragaria vesca HOM05D004519 ORTHO05D006283 3.0e-159 565.8 411 67.4
FAN18G3814 Fragaria x ananassa HOM05D004519 ORTHO05D006283 3.0e-159 565.8 411 67.4
MD06G1026700 Malus domestica HOM05D004519 ORTHO05D006283 6.6e-159 564.7 447 62.9
FAN13G3061 Fragaria x ananassa HOM05D004519 ORTHO05D006283 8.6e-159 564.3 377 71.4
MD16G1279400 Malus domestica HOM05D004519 ORTHO05D006283 1.5e-158 563.5 438 63.7
FAN04G1490 Fragaria x ananassa HOM05D004519 ORTHO05D006283 2.5e-158 562.8 456 62.7
Dinv25262 Davidia involucrata HOM05D004519 ORTHO05D006283 3.3e-158 562.4 383 70.2
Cfa012505 Carpinus fangiana HOM05D004519 ORTHO05D006283 1.6e-157 560.1 445 63.1
Ciclev10001047m.g Citrus clementina HOM05D004519 ORTHO05D006283 3.6e-157 558.9 464 60.6
Potri.001G136600 Populus trichocarpa HOM05D004519 ORTHO05D006283 3.6e-157 558.9 448 64.3
THA.LOC104812759 Tarenaya hassleriana HOM05D004519 ORTHO05D006283 3.6e-157 558.9 364 71.4
Manes.17G018849 Manihot esculenta HOM05D004519 ORTHO05D006283 1.4e-156 557.0 420 64.8
FAN18G1908 Fragaria x ananassa HOM05D004519 ORTHO05D006283 2.3e-156 556.2 475 61.3
Dinv29004 Davidia involucrata HOM05D004519 ORTHO05D006283 3.4e-155 552.4 446 63.0
TAR629G2035 Trochodendron aralioides HOM05D004519 ORTHO05D006283 5.8e-155 551.6 355 72.4
THA.LOC104814413 Tarenaya hassleriana HOM05D004519 ORTHO05D006283 7.5e-155 551.2 452 61.9
CANSAT01G0127 Cannabis sativa HOM05D004519 ORTHO05D006283 9.8e-155 550.8 374 70.6
Sc01g0007150 Simmondsia chinensis HOM05D004519 ORTHO05D006283 1.3e-154 550.4 385 68.3
CsaV3_3G048840 Cucumis sativus L. HOM05D004519 ORTHO05D006283 1.7e-154 550.1 431 63.8
MELO3C003440.2 Cucumis melo HOM05D004519 ORTHO05D006283 3.7e-154 548.9 364 71.7
Gohir.A11G028600 Gossypium hirsutum HOM05D004519 ORTHO05D006283 3.7e-154 548.9 366 71.9
Oeu027094.2 Olea europaea HOM05D004519 ORTHO05D006283 4.9e-154 548.5 367 71.1
Aa31LG2G13810 Aethionema arabicum HOM05D004519 ORTHO05D006283 6.4e-154 548.1 383 67.6
Thhalv10007540m.g Eutrema salsugineum HOM05D004519 ORTHO05D006283 5.4e-153 545.0 366 69.1
PSO063G4347 Papaver somniferum HOM05D004519 ORTHO05D006283 5.4e-153 545.0 366 69.4
Sed0022223 Sechium edule HOM05D004519 ORTHO05D006283 5.4e-153 545.0 444 62.6
AL1G46330 Arabidopsis lyrata HOM05D004519 ORTHO05D006283 7.1e-153 544.7 366 69.1
A05p25130 Brassica napus HOM05D004519 ORTHO05D006283 7.1e-153 544.7 387 67.2
BraA05t21393Z Brassica rapa HOM05D004519 ORTHO05D006283 7.1e-153 544.7 387 67.2
Gorai.007G033500 Gossypium raimondii HOM05D004519 ORTHO05D006283 1.2e-152 543.9 440 62.7
arahy.Tifrunner.gnm1.ann1.BI8WMI Arachis hypogaea HOM05D004519 ORTHO05D006283 1.6e-152 543.5 419 65.9
arahy.Tifrunner.gnm1.ann1.D9NVDI Arachis hypogaea HOM05D004519 ORTHO05D006283 1.6e-152 543.5 419 65.9
Sp1g27880 Schrenkiella parvula HOM05D004519 ORTHO05D006283 2.7e-152 542.7 408 64.5
AT1G32200 Arabidopsis thaliana HOM05D004519 ORTHO05D006283 3.5e-152 542.3 366 69.1
BcaC05g27905 Brassica carinata HOM05D004519 ORTHO05D006283 3.5e-152 542.3 452 60.6
Nn1g00218 Nelumbo nucifera HOM05D004519 ORTHO05D006283 3.5e-152 542.3 366 68.3
BcaB04g17996 Brassica carinata HOM05D004519 ORTHO05D006283 6.0e-152 541.6 364 69.2
PSO782G3212 Papaver somniferum HOM05D004519 ORTHO05D006283 6.0e-152 541.6 366 68.9
A09p34000 Brassica napus HOM05D004519 ORTHO05D006283 7.8e-152 541.2 390 66.4
C05p31600 Brassica napus HOM05D004519 ORTHO05D006283 7.8e-152 541.2 390 66.7
BolC5t31883H Brassica oleracea HOM05D004519 ORTHO05D006283 7.8e-152 541.2 390 66.7
Hma1.2p1_1569F.1_g291200 Hydrangea macrophylla HOM05D004519 ORTHO05D006283 1.3e-151 540.4 449 62.8
CSS0024637 Camellia sinensis var. sinensis HOM05D004519 ORTHO05D006283 1.7e-151 540.0 443 62.3
Carub.0001s3053 Capsella rubella HOM05D004519 ORTHO05D006283 1.7e-151 540.0 366 68.6
Gorai.004G182200 Gossypium raimondii HOM05D004519 ORTHO05D006283 2.3e-151 539.7 436 63.5
BcaC05g27251 Brassica carinata HOM05D004519 ORTHO05D006283 3.0e-151 539.3 390 66.9
A08p09320 Brassica napus HOM05D004519 ORTHO05D006283 3.9e-151 538.9 364 69.2
BraA08t32930Z Brassica rapa HOM05D004519 ORTHO05D006283 3.9e-151 538.9 364 69.2
BcaC07g37628 Brassica carinata HOM05D004519 ORTHO05D006283 5.1e-151 538.5 364 69.0
Cc08_g03490 Coffea canephora HOM05D004519 ORTHO05D006283 5.1e-151 538.5 371 71.2
BolC8t47999H Brassica oleracea HOM05D004519 ORTHO05D006283 6.6e-151 538.1 364 69.0
Gohir.D11G030600 Gossypium hirsutum HOM05D004519 ORTHO05D006283 1.5e-150 537.0 386 67.6
BcaB03g13753 Brassica carinata HOM05D004519 ORTHO05D006283 1.9e-150 536.6 445 60.2
Aqoxy3G02176 Aquilegia oxysepala HOM05D004519 ORTHO05D006283 4.3e-150 535.4 391 66.5
Eucgr.E00228 Eucalyptus grandis HOM05D004519 ORTHO05D006283 1.6e-149 533.5 364 67.6
HanXRQChr03g0083251 Helianthus annuus HOM05D004519 ORTHO05D006283 2.8e-149 532.7 434 63.1
BcaB07g32892 Brassica carinata HOM05D004519 ORTHO05D006283 1.1e-148 530.8 439 60.6
Nitab4.5_0000529g0120 Nicotiana tabacum HOM05D004519 ORTHO05D006283 1.1e-148 530.8 363 69.7
CARHR031570 Cardamine hirsuta HOM05D004519 ORTHO05D006283 2.3e-148 529.6 439 61.3
MSTRG.24848 Avicennia marina HOM05D004519 ORTHO05D006283 3.1e-148 529.3 363 68.9
Migut.E00743 Erythranthe guttata HOM05D004519 ORTHO05D006283 3.1e-148 529.3 362 68.8
Sabra01G0105700 Salix brachista HOM05D004519 ORTHO05D006283 6.8e-148 528.1 502 57.2
ECA240G3299 Erigeron canadensis HOM05D004519 ORTHO05D006283 2.0e-147 526.6 363 69.7
HanXRQChr13g0414231 Helianthus annuus HOM05D004519 ORTHO05D006283 3.4e-147 525.8 380 68.7
CAN.G726.25 Capsicum annuum HOM05D004519 ORTHO05D006283 4.4e-147 525.4 366 68.3
Solyc08g076470.4 Solanum lycopersicum HOM05D004519 ORTHO05D006283 5.8e-147 525.0 378 66.9
Nn3g19385 Nelumbo nucifera HOM05D004519 ORTHO05D006283 7.6e-147 524.6 366 67.5
Lsat_1_v5_gn_6_80100 Lactuca sativa HOM05D004519 ORTHO05D006283 1.7e-146 523.5 363 68.3
ClCG09G011630 Citrullus lanatus HOM05D004519 ORTHO05D006283 3.7e-146 522.3 476 58.8
Sopen08g025050 Solanum pennellii HOM05D004519 ORTHO05D006283 3.7e-146 522.3 392 64.8
Duzib205G0301 Durio zibethinus HOM05D004519 ORTHO05D006283 1.1e-145 520.8 360 68.1
SGA_v2.0_scaffold198G41070 Striga asiatica HOM05D004519 ORTHO05D006283 1.9e-145 520.0 380 66.1
MBI04_g32203_MAGBIO Magnolia biondii HOM05D004519 ORTHO05D006283 1.6e-144 516.9 394 63.5
Gohir.A03G000032 Gossypium hirsutum HOM05D004519 ORTHO05D006283 2.1e-144 516.5 366 68.3
Gorai.003G185500 Gossypium raimondii HOM05D004519 ORTHO05D006283 1.5e-142 510.4 366 67.5
Os10g0577900 Oryza sativa ssp. japonica HOM05D004519 ORTHO05D006283 3.3e-142 509.2 368 64.4
QL12p001672 Quercus lobata HOM05D004519 ORTHO05D006283 3.6e-141 505.8 491 53.6
BraA09t38946Z Brassica rapa HOM05D004519 ORTHO05D006283 6.2e-141 505.0 390 64.4
CSS0001538 Camellia sinensis var. sinensis HOM05D004519 ORTHO05D006283 4.0e-140 502.3 333 72.4
ATR0829G164 Amborella trichopoda HOM05D004519 ORTHO05D006283 8.9e-140 501.1 461 57.9
Zm00001eb224960 Zea mays HOM05D004519 ORTHO05D006283 8.9e-140 501.1 358 64.2
Prupe.5G027200 Prunus persica HOM05D004519 ORTHO05D006283 2.0e-139 500.0 465 56.8
Zm00001eb025080 Zea mays HOM05D004519 ORTHO05D006283 4.9e-138 495.4 362 63.0
C05p39140 Brassica napus HOM05D004519 ORTHO05D006283 1.6e-136 490.3 416 59.4
AUR62007353 Chenopodium quinoa HOM05D004519 ORTHO05D006283 1.9e-134 483.4 432 57.2
AUR62018641 Chenopodium quinoa HOM05D004519 ORTHO05D006283 2.5e-134 483.0 352 65.6
vmacro00276 Vaccinium macrocarpon HOM05D004519 ORTHO05D006283 7.3e-134 481.5 329 70.2
SEGI_02196 Sequoiadendron giganteum HOM05D004519 ORTHO05D006283 1.3e-133 480.7 364 63.5
Rhsim11G0021900 Rhododendron simsii HOM05D004519 ORTHO05D006283 1.8e-132 476.9 564 47.7
DCAR_008221 Daucus carota HOM05D004519 ORTHO05D006283 2.6e-131 473.0 373 62.7
Gohir.D03G176300 Gossypium hirsutum HOM05D004519 ORTHO05D006283 5.8e-131 471.9 333 67.9
CDE12G0245 Ceratophyllum demersum HOM05D004519 ORTHO05D006283 2.2e-130 469.9 369 61.2
Thecc.03G310400 Theobroma cacao HOM05D004519 ORTHO05D006283 2.9e-130 469.5 430 57.7
Lj2A231G41 Lonicera japonica HOM05D004519 ORTHO05D006283 5.4e-129 465.3 478 53.1
Duzib068G1409 Durio zibethinus HOM05D004519 ORTHO05D006283 7.1e-129 464.9 445 56.2
unitig_32.g10899 Utricularia gibba HOM05D004519 ORTHO05D006283 1.9e-126 456.8 319 67.1
Mapoly0045s0098 Marchantia polymorpha HOM05D004519 ORTHO05D006283 7.4e-126 454.9 379 55.4
Peaxi162Scf00170g00818 Petunia axillaris HOM05D004519 ORTHO05D006283 7.6e-123 444.9 385 59.0
Haze_08164 Corylus avellana HOM05D004519 ORTHO05D006283 1.3e-122 444.1 363 61.2
Nitab4.5_0012493g0010 Nicotiana tabacum HOM05D004519 ORTHO05D006283 1.3e-122 444.1 304 70.4
Gohir.D08G174500 Gossypium hirsutum HOM05D004519 ORTHO05D006283 3.5e-120 436.0 368 60.9
FAN08G3243 Fragaria x ananassa HOM05D004519 ORTHO05D006283 6.0e-120 435.3 400 57.0
Gohir.A08G153600 Gossypium hirsutum HOM05D004519 ORTHO05D006283 1.8e-119 433.7 368 60.6
EL10Ac5g12013 Beta vulgaris HOM05D004519 ORTHO05D006283 3.9e-119 432.6 413 52.3
CDE04G2515 Ceratophyllum demersum HOM05D004519 ORTHO05D006283 8.7e-119 431.4 353 58.6
SMO244G0022 Selaginella moellendorffii HOM05D004519 ORTHO05D006283 9.0e-116 421.4 353 55.8
Pp3c7_2970 Physcomitrium patens HOM05D004519 ORTHO05D006283 5.8e-115 418.7 364 52.2
HPP92_020895 Vanilla planifolia HOM05D004519 ORTHO05D006283 1.0e-114 417.9 298 65.8
HanXRQChr06g0172791 Helianthus annuus HOM05D004519 ORTHO05D006283 1.7e-114 417.2 354 58.8
AagrBONN_evm.TU.Sc2ySwM_117.1032 Anthoceros agrestis HOM05D004547 ORTHO05D005133 6.3e-109 398.7 376 52.9
CBR_g4494 Chara braunii HOM05D004519 ORTHO05D006283 1.3e-106 391.0 398 49.5
EL10Ac5g12011 Beta vulgaris HOM05D004519 ORTHO05D006283 3.8e-106 389.4 399 50.1
DCAR_004271 Daucus carota HOM05D004519 ORTHO05D006283 8.7e-103 378.3 248 71.0
Actinidia01317 Actinidia chinensis HOM05D004519 ORTHO05D006283 8.5e-98 361.7 243 71.2
Haze_08160 Corylus avellana HOM05D004519 ORTHO05D006283 1.1e-97 361.3 255 69.8
Cpa.g.sc208.3 Carica papaya HOM05D004519 ORTHO05D006283 9.4e-97 358.2 217 76.5
Eucgr.E01634 Eucalyptus grandis HOM05D004519 ORTHO05D006283 1.4e-92 344.4 249 64.7
Atru.chr6.1525 Acer truncatum HOM05D004519 ORTHO05D006283 1.5e-86 324.3 206 74.8
Cre02.g143000 Chlamydomonas reinhardtii HOM05D004519 ORTHO05D006283 4.4e-78 296.2 359 43.2
MCO03G317 Micromonas commoda HOM05D004519 ORTHO05D006283 3.0e-63 246.9 333 41.4
PRCOL_00006772 Prasinoderma coloniale HOM05D004519 ORTHO05D006283 5.7e-62 242.7 330 39.7
Actinidia29340 Actinidia chinensis HOM05D004519 ORTHO05D006283 8.3e-61 238.8 176 64.8
Hma1.2p1_3246F.1_g334370 Hydrangea macrophylla HOM05D004519 ORTHO05D006283 7.3e-41 172.6 176 52.3
Cpa.g.sc208.5 Carica papaya HOM05D004519 ORTHO05D006283 2.9e-37 160.6 105 69.5
MBI15_g25773_MAGBIO Magnolia biondii HOM05D004519 ORTHO05D006283 5.6e-33 146.4 98 67.3
Eucgr.A01818 Eucalyptus grandis HOM05D004519 ORTHO05D006283 4.4e-30 136.7 83 74.7
Haze_20066 Corylus avellana HOM05D004519 ORTHO05D007437 2.1e-19 101.3 95 52.6
arahy.Tifrunner.gnm1.ann1.LG4SFI Arachis hypogaea HOM05D000755 ORTHO05D017477 3.5e-19 100.5 108 50.0
HanXRQChr16g0500211 Helianthus annuus HOM05D004519 ORTHO05D006283 1.3e-18 98.6 77 62.3
Actinidia01316 Actinidia chinensis HOM05D004519 ORTHO05D006283 1.5e-17 95.1 62 69.4
PGSC0003DMG401014796 Solanum tuberosum HOM05D004519 ORTHO05D006283 3.3e-17 94.0 93 49.5
Gohir.D08G117301 Gossypium hirsutum HOM05D004519 ORTHO05D017048 3.8e-13 80.5 56 62.5
Gohir.D11G228750 Gossypium hirsutum HOM05D004519 ORTHO05D017048 3.8e-13 80.5 56 62.5
Gohir.D11G251850 Gossypium hirsutum HOM05D004519 ORTHO05D017048 3.8e-13 80.5 56 62.5
Gohir.D13G135501 Gossypium hirsutum HOM05D004519 ORTHO05D017048 1.1e-12 79.0 56 60.7
Gorai.008G116000 Gossypium raimondii HOM05D004519 ORTHO05D017048 5.4e-12 76.6 54 61.1
RcHm_v2.0_Chr5g0062811 Rosa chinensis HOM05D004519 ORTHO05D017048 1.2e-11 75.5 54 63.0
COL.COLO4_16939 Corchorus olitorius HOM05D004519 ORTHO05D006283 1.9e-09 68.2 66 56.1
arahy.Tifrunner.gnm1.ann1.18EICQ Arachis hypogaea HOM05D000755 ORTHO05D017477 1.1e-07 62.4 60 53.3


User provided reference genes

Program Settings