Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G19430 Trifolium pratense HOM05D002915 ORTHO05D003004 1.5e-80 302.8 151 100.0
TPR.G19429 Trifolium pratense HOM05D002915 ORTHO05D003004 1.5e-64 249.6 140 90.0
TPR.G13381 Trifolium pratense HOM05D002915 ORTHO05D003004 5.1e-28 128.3 116 56.9
TPR.G23884 Trifolium pratense HOM05D002915 ORTHO05D003004 5.1e-28 128.3 129 50.4
Psat0s1573g0120 Pisum sativum HOM05D002915 ORTHO05D003004 7.4e-27 124.4 116 51.7
TPR.G30653 Trifolium pratense HOM05D002915 ORTHO05D003004 2.8e-26 122.5 116 55.2
Lj4g0025234 Lotus japonicus HOM05D002915 ORTHO05D003004 1.1e-22 110.5 135 43.7
Lj4g0001673 Lotus japonicus HOM05D002915 ORTHO05D003004 7.2e-22 107.8 137 43.8
Lj1g0028201 Lotus japonicus HOM05D002915 ORTHO05D003004 1.6e-21 106.7 124 41.9
Lj4g0002182 Lotus japonicus HOM05D002915 ORTHO05D003004 1.8e-20 103.2 116 44.8
Psat0s6185g0040 Pisum sativum HOM05D002915 ORTHO05D003004 2.3e-20 102.8 154 37.7
Lj2g0014982 Lotus japonicus HOM05D002915 ORTHO05D003004 3.0e-20 102.4 117 44.4
Lj2g0026934 Lotus japonicus HOM05D002915 ORTHO05D003004 3.9e-20 102.1 108 43.5
Lj4g0014849 Lotus japonicus HOM05D002915 ORTHO05D003004 3.9e-20 102.1 131 39.7
Psat0s3757g0040 Pisum sativum HOM05D002915 ORTHO05D003004 3.9e-20 102.1 154 37.7
Lj6g0013707 Lotus japonicus HOM05D002915 ORTHO05D003004 2.0e-19 99.8 108 43.5
Lj6g0019512 Lotus japonicus HOM05D002915 ORTHO05D003004 2.0e-19 99.8 108 45.4
Lalb_Chr18g0050831 Lupinus albus HOM05D002915 ORTHO05D003004 2.0e-19 99.8 141 39.7
Lj3g0026757 Lotus japonicus HOM05D002915 ORTHO05D003004 2.6e-19 99.4 106 42.5
Lj3g0023229 Lotus japonicus HOM05D002915 ORTHO05D003004 5.7e-19 98.2 118 44.1
Lalb_Chr10g0105601 Lupinus albus HOM05D002915 ORTHO05D003004 9.7e-19 97.4 106 43.4
Lj1g0003622 Lotus japonicus HOM05D002915 ORTHO05D003004 1.3e-18 97.1 116 39.7
Lj3g0011377 Lotus japonicus HOM05D002915 ORTHO05D003004 1.4e-17 93.6 107 42.1
Glyma.02G238900 Glycine max HOM05D002915 ORTHO05D003004 1.6e-16 90.1 116 40.5
Lj5g0000576 Lotus japonicus HOM05D002915 ORTHO05D003004 1.3e-15 87.0 126 38.1
Lj5g0020165 Lotus japonicus HOM05D002915 ORTHO05D003004 3.8e-15 85.5 126 38.9
Manes.11G084185 Manihot esculenta HOM05D002915 ORTHO05D003004 1.1e-14 84.0 110 38.2
Lj5g0016376 Lotus japonicus HOM05D002915 ORTHO05D003004 1.5e-14 83.6 126 37.3
Hma1.2p1_0167F.1_g073810 Hydrangea macrophylla HOM05D002915 ORTHO05D003004 2.5e-14 82.8 118 39.0
TAR629G0865 Trochodendron aralioides HOM05D002915 ORTHO05D003004 2.5e-14 82.8 114 36.8
CSS0045033 Camellia sinensis var. sinensis HOM05D002915 ORTHO05D003004 5.5e-14 81.6 116 42.2
Dinv14798 Davidia involucrata HOM05D002915 ORTHO05D003004 7.2e-14 81.3 138 34.1
Lj2g0021070 Lotus japonicus HOM05D002915 ORTHO05D003004 9.4e-14 80.9 131 38.2
Lj6g0021938 Lotus japonicus HOM05D002915 ORTHO05D003004 2.1e-13 79.7 131 38.2
Phvul.003G180500 Phaseolus vulgaris HOM05D002915 ORTHO05D003004 2.1e-13 79.7 114 37.7
ECA233G1149 Erigeron canadensis HOM05D000825 ORTHO05D003004 8.0e-13 77.8 108 38.0
Haze_14809 Corylus avellana HOM05D002915 ORTHO05D003004 1.0e-12 77.4 111 37.8
Rhsim12G0105400 Rhododendron simsii HOM05D002915 ORTHO05D003004 1.0e-12 77.4 125 36.0
Manes.12G023850 Manihot esculenta HOM05D002915 ORTHO05D003004 1.8e-12 76.6 107 35.5
Sabra13G0007400 Salix brachista HOM05D002915 ORTHO05D003004 1.8e-12 76.6 112 37.5
PSO339G6727 Papaver somniferum HOM05D002915 ORTHO05D003004 3.0e-12 75.9 127 36.2
CiPaw.06G099700 Carya illinoinensis HOM05D002915 ORTHO05D003004 4.0e-12 75.5 111 34.2
Phvul.L006943 Phaseolus vulgaris HOM05D002915 ORTHO05D003004 4.0e-12 75.5 132 33.3
Lj6A815T43 Lonicera japonica HOM05D002915 ORTHO05D003004 5.2e-12 75.1 98 36.7
TAR629G2135 Trochodendron aralioides HOM05D002915 ORTHO05D003004 5.2e-12 75.1 118 34.7
Rhsim12G0105300 Rhododendron simsii HOM05D002915 ORTHO05D003004 6.7e-12 74.7 128 37.5
Rhsim13G0213700 Rhododendron simsii HOM05D002915 ORTHO05D003004 6.7e-12 74.7 126 38.1
Rhsim02G0221300 Rhododendron simsii HOM05D002915 ORTHO05D003004 8.8e-12 74.3 128 37.5
Thhalv10019573m.g Eutrema salsugineum HOM05D002915 ORTHO05D003004 1.2e-11 73.9 132 32.6
Lj6A821T72 Lonicera japonica HOM05D002915 ORTHO05D003004 1.2e-11 73.9 94 37.2
PSO832G1590 Papaver somniferum HOM05D002915 ORTHO05D003004 1.2e-11 73.9 116 36.2
Phvul.002G142400 Phaseolus vulgaris HOM05D002915 ORTHO05D003004 1.2e-11 73.9 117 31.6
Potri.013G008800 Populus trichocarpa HOM05D002915 ORTHO05D003004 1.2e-11 73.9 106 37.7
TAR629G0058 Trochodendron aralioides HOM05D002915 ORTHO05D003004 1.5e-11 73.6 116 36.2
Haze_24934 Corylus avellana HOM05D002915 ORTHO05D003004 2.0e-11 73.2 122 34.4
Glyma.17G083900 Glycine max HOM05D002915 ORTHO05D003004 2.0e-11 73.2 131 37.4
Lsat_1_v5_gn_8_150181 Lactuca sativa HOM05D000825 ORTHO05D003684 2.0e-11 73.2 108 37.0
Lj4g0001937 Lotus japonicus HOM05D002915 ORTHO05D003004 2.0e-11 73.2 114 36.8
Lj4g0013622 Lotus japonicus HOM05D002915 ORTHO05D003004 2.0e-11 73.2 114 36.8
Manes.12G014800 Manihot esculenta HOM05D002915 ORTHO05D003004 2.0e-11 73.2 107 33.6
Sed0005801 Sechium edule HOM05D002915 ORTHO05D003004 2.0e-11 73.2 115 33.0
TWI09G1418 Tripterygium wilfordii HOM05D002915 ORTHO05D003004 2.0e-11 73.2 132 32.6
Hund03449 Selenicereus undatus HOM05D002915 ORTHO05D003004 2.6e-11 72.8 115 34.8
Gohir.A11G040100 Gossypium hirsutum HOM05D002915 ORTHO05D003004 3.3e-11 72.4 123 37.4
Lj1g0000366 Lotus japonicus HOM05D002915 ORTHO05D003004 3.3e-11 72.4 131 33.6
Lj4g0005635 Lotus japonicus HOM05D002915 ORTHO05D003004 3.3e-11 72.4 114 36.8
Medtr4g112590 Medicago truncatula HOM05D002915 ORTHO05D003004 3.3e-11 72.4 114 35.1
MD16G1169500 Malus domestica HOM05D002915 ORTHO05D003004 4.4e-11 72.0 124 29.0
Actinidia25760 Actinidia chinensis HOM05D002915 ORTHO05D003004 7.5e-11 71.2 125 36.8
CARHR060200 Cardamine hirsuta HOM05D002915 ORTHO05D003004 9.7e-11 70.9 148 29.7
TPR.G3196 Trifolium pratense HOM05D002915 ORTHO05D003004 9.7e-11 70.9 138 29.0
Ciclev10033456m.g Citrus clementina HOM05D002915 ORTHO05D003004 1.3e-10 70.5 137 32.8
Gorai.007G046700 Gossypium raimondii HOM05D002915 ORTHO05D003004 1.3e-10 70.5 122 36.9
PSO384G2811 Papaver somniferum HOM05D002915 ORTHO05D003004 1.3e-10 70.5 127 34.6
PSO384G3355 Papaver somniferum HOM05D002915 ORTHO05D003004 1.3e-10 70.5 127 34.6
ClCG11G013100 Citrullus lanatus HOM05D002915 ORTHO05D003004 1.7e-10 70.1 130 30.8
Lj6g0001752 Lotus japonicus HOM05D002915 ORTHO05D003004 2.2e-10 69.7 116 34.5
CiPaw.05G115300 Carya illinoinensis HOM05D002915 ORTHO05D003004 2.8e-10 69.3 120 34.2
CiPaw.05G115400 Carya illinoinensis HOM05D002915 ORTHO05D003004 2.8e-10 69.3 120 34.2
Cc00_g21400 Coffea canephora HOM05D002915 ORTHO05D003004 2.8e-10 69.3 120 33.3
Gohir.D11G043350 Gossypium hirsutum HOM05D002915 ORTHO05D003004 2.8e-10 69.3 122 37.7
CiPaw.05G115500 Carya illinoinensis HOM05D002915 ORTHO05D003004 3.7e-10 68.9 120 34.2
Glyma.07G247800 Glycine max HOM05D002915 ORTHO05D003004 3.7e-10 68.9 118 32.2
Glyma.17G026300 Glycine max HOM05D002915 ORTHO05D003004 3.7e-10 68.9 119 33.6
MD16G1170100 Malus domestica HOM05D002915 ORTHO05D003004 3.7e-10 68.9 111 31.5
MELO3C011803.2 Cucumis melo HOM05D002915 ORTHO05D003004 4.8e-10 68.6 112 34.8
vmacro16134 Vaccinium macrocarpon HOM05D002915 ORTHO05D003004 4.8e-10 68.6 128 32.8
MELO3C034049.2 Cucumis melo HOM05D002915 ORTHO05D003004 6.3e-10 68.2 112 34.8
Lj4g0008862 Lotus japonicus HOM05D002915 ORTHO05D003004 6.3e-10 68.2 133 32.3
MELO3C029741.2 Cucumis melo HOM05D002915 ORTHO05D003004 8.2e-10 67.8 110 33.6
Cc03_g08730 Coffea canephora HOM05D002915 ORTHO05D003004 1.4e-09 67.0 111 34.2
Manes.13G015600 Manihot esculenta HOM05D002915 ORTHO05D003004 1.4e-09 67.0 107 35.5
Medtr5g033770 Medicago truncatula HOM05D002915 ORTHO05D003004 1.4e-09 67.0 121 29.8
Psat4g025920 Pisum sativum HOM05D002915 ORTHO05D003004 1.4e-09 67.0 121 31.4
Atru.chr1.711 Acer truncatum HOM05D002915 ORTHO05D003004 2.4e-09 66.2 127 35.4
Cfa002665 Carpinus fangiana HOM05D002915 ORTHO05D003004 3.1e-09 65.9 122 32.8
Thecc.09G039200 Theobroma cacao HOM05D002915 ORTHO05D003004 7.0e-09 64.7 124 33.1
TAR374G0847 Trochodendron aralioides HOM05D002915 ORTHO05D003004 9.1e-09 64.3 101 36.6
CANSAT64G2697 Cannabis sativa HOM05D002915 ORTHO05D003004 1.2e-08 63.9 120 34.2
Lalb_Chr13g0303601 Lupinus albus HOM05D002915 ORTHO05D003004 1.2e-08 63.9 118 32.2
Cc00_g09710 Coffea canephora HOM05D002915 ORTHO05D003004 1.6e-08 63.5 112 34.8
Cc02_g04260 Coffea canephora HOM05D002915 ORTHO05D003004 1.6e-08 63.5 123 33.3
Atru.chr11.2288 Acer truncatum HOM05D002915 ORTHO05D003004 2.0e-08 63.2 114 35.1
CsaV3_1G004340 Cucumis sativus L. HOM05D002915 ORTHO05D003004 2.0e-08 63.2 129 29.5
Eucgr.H01273 Eucalyptus grandis HOM05D002915 ORTHO05D003004 2.0e-08 63.2 111 36.0
Potri.001G321400 Populus trichocarpa HOM05D002915 ORTHO05D003004 2.0e-08 63.2 126 31.0
Aqoxy1G01229 Aquilegia oxysepala HOM05D002915 ORTHO05D003004 2.7e-08 62.8 102 33.3
Aqoxy4G02244 Aquilegia oxysepala HOM05D002915 ORTHO05D003004 2.7e-08 62.8 97 35.1
CAN.G1143.27 Capsicum annuum HOM05D002915 ORTHO05D003004 2.7e-08 62.8 140 31.4
Ca_21504_v3 Cicer arietinum L. HOM05D002915 ORTHO05D003004 2.7e-08 62.8 137 31.4
arahy.Tifrunner.gnm1.ann1.JTPM3R Arachis hypogaea HOM05D000176 ORTHO05D000106 3.5e-08 62.4 100 36.0
Cc11_g03110 Coffea canephora HOM05D002915 ORTHO05D003004 3.5e-08 62.4 120 31.7
Thhalv10019642m.g Eutrema salsugineum HOM05D002915 ORTHO05D003004 3.5e-08 62.4 137 29.9
Medtr4g119850 Medicago truncatula HOM05D002915 ORTHO05D003004 3.5e-08 62.4 132 27.3
PGR142G3351 Punica granatum HOM05D002915 ORTHO05D003004 3.5e-08 62.4 140 30.0
Atru.chr11.2244 Acer truncatum HOM05D002915 ORTHO05D003004 4.5e-08 62.0 130 36.9
Atru.chr11.2259 Acer truncatum HOM05D002915 ORTHO05D003004 4.5e-08 62.0 130 36.9
arahy.Tifrunner.gnm1.ann1.J68HPB Arachis hypogaea HOM05D002915 ORTHO05D003004 4.5e-08 62.0 128 32.0
Cc05_g03590 Coffea canephora HOM05D002915 ORTHO05D003004 4.5e-08 62.0 122 32.8
ECA234G1395 Erigeron canadensis HOM05D004805 ORTHO05D005756 4.5e-08 62.0 111 34.2
Prupe.1G137300 Prunus persica HOM05D002915 ORTHO05D003004 4.5e-08 62.0 121 30.6
Atru.chr1.712 Acer truncatum HOM05D002915 ORTHO05D003004 5.9e-08 61.6 127 33.9
COL.COLO4_36468 Corchorus olitorius HOM05D002915 ORTHO05D003004 5.9e-08 61.6 113 35.4
Duzib168G1329 Durio zibethinus HOM05D002915 ORTHO05D003004 5.9e-08 61.6 118 36.4
HanXRQChr08g0207481 Helianthus annuus HOM05D002915 ORTHO05D003004 7.7e-08 61.2 88 35.2
FAN19G1392 Fragaria x ananassa HOM05D002915 ORTHO05D003004 1.0e-07 60.8 137 31.4
Duzib168G1942 Durio zibethinus HOM05D002915 ORTHO05D003004 1.3e-07 60.5 118 32.2
Gohir.A09G111900 Gossypium hirsutum HOM05D002915 ORTHO05D003004 1.3e-07 60.5 121 33.1
Gohir.D09G108500 Gossypium hirsutum HOM05D002915 ORTHO05D003004 1.3e-07 60.5 118 33.9
Oeu033490.1 Olea europaea HOM05D002915 ORTHO05D003004 1.3e-07 60.5 129 30.2
DCAR_016182 Daucus carota HOM05D002915 ORTHO05D003004 1.7e-07 60.1 110 31.8
Duzib150G0710 Durio zibethinus HOM05D002915 ORTHO05D003004 1.7e-07 60.1 122 32.8
PGSC0003DMG400043877 Solanum tuberosum HOM05D002915 ORTHO05D003004 1.7e-07 60.1 110 29.1
THA.LOC104810144 Tarenaya hassleriana HOM05D002915 ORTHO05D003004 1.7e-07 60.1 139 26.6
CsaV3_5G029620 Cucumis sativus L. HOM05D002915 ORTHO05D003004 2.2e-07 59.7 112 31.2
Migut.C00066 Erythranthe guttata HOM05D002915 ORTHO05D003004 2.2e-07 59.7 124 30.6
Ciclev10006753m.g Citrus clementina HOM05D002915 ORTHO05D003004 2.9e-07 59.3 103 35.0
Migut.C00063 Erythranthe guttata HOM05D002915 ORTHO05D003004 2.9e-07 59.3 124 30.6
Cc08_g03020 Coffea canephora HOM05D002915 ORTHO05D003004 3.8e-07 58.9 103 34.0
Migut.F00476 Erythranthe guttata HOM05D002915 ORTHO05D003004 3.8e-07 58.9 123 31.7
Gohir.D09G108400 Gossypium hirsutum HOM05D002915 ORTHO05D003004 3.8e-07 58.9 118 33.1
Gorai.006G126100 Gossypium raimondii HOM05D002915 ORTHO05D003004 3.8e-07 58.9 118 33.1
Migut.H01084 Erythranthe guttata HOM05D002915 ORTHO05D003004 5.0e-07 58.5 124 31.5
FAN17G1773 Fragaria x ananassa HOM05D002915 ORTHO05D003004 5.0e-07 58.5 141 31.2
Medtr3g075360 Medicago truncatula HOM05D002915 ORTHO05D003004 5.0e-07 58.5 133 27.1
Gorai.006G126200 Gossypium raimondii HOM05D002915 ORTHO05D003004 6.5e-07 58.2 118 33.1
Aqoxy1G00479 Aquilegia oxysepala HOM05D002915 ORTHO05D003004 8.5e-07 57.8 115 30.4
Gohir.A05G169100 Gossypium hirsutum HOM05D002915 ORTHO05D003004 8.5e-07 57.8 107 33.6
DCAR_018111 Daucus carota HOM05D002915 ORTHO05D003004 1.5e-06 57.0 120 27.5
FAN26G0404 Fragaria x ananassa HOM05D002915 ORTHO05D003004 1.5e-06 57.0 116 30.2
Medtr4g123430 Medicago truncatula HOM05D002915 ORTHO05D003004 1.5e-06 57.0 138 31.2
PGSC0003DMG400019090 Solanum tuberosum HOM05D002915 ORTHO05D003004 1.5e-06 57.0 110 28.2
Thecc.06G218700 Theobroma cacao HOM05D002915 ORTHO05D003004 1.5e-06 57.0 118 30.5
Gohir.D05G172300 Gossypium hirsutum HOM05D002915 ORTHO05D003004 1.9e-06 56.6 118 32.2
PSO782G5303 Papaver somniferum HOM05D002915 ORTHO05D003004 1.9e-06 56.6 93 34.4
CAN.G853.27 Capsicum annuum HOM05D002915 ORTHO05D003004 2.5e-06 56.2 116 33.6
RcHm_v2.0_Chr4g0422141 Rosa chinensis HOM05D002915 ORTHO05D003004 2.5e-06 56.2 113 31.0
PGSC0003DMG400037269 Solanum tuberosum HOM05D002915 ORTHO05D003004 2.5e-06 56.2 134 32.1
CSS0048418 Camellia sinensis var. sinensis HOM05D002915 ORTHO05D003004 3.2e-06 55.8 64 39.1
QL03p054762 Quercus lobata HOM05D002915 ORTHO05D003004 4.2e-06 55.5 133 33.8
Cpa.g.sc85.123 Carica papaya HOM05D002915 ORTHO05D003004 5.5e-06 55.1 80 31.2
AL2G26290 Arabidopsis lyrata HOM05D002915 ORTHO05D003004 7.2e-06 54.7 131 30.5
AT1G67623 Arabidopsis thaliana HOM05D002915 ORTHO05D003004 7.2e-06 54.7 124 29.8
FAN12G2317 Fragaria x ananassa HOM05D002915 ORTHO05D003004 7.2e-06 54.7 137 28.5
Nn1g09544 Nelumbo nucifera HOM05D002915 ORTHO05D003004 7.2e-06 54.7 115 32.2
BcaC08g46172 Brassica carinata HOM05D002915 ORTHO05D003004 9.4e-06 54.3 158 25.9
A07p34150 Brassica napus HOM05D002915 ORTHO05D003004 9.4e-06 54.3 158 25.9
C06p42620 Brassica napus HOM05D002915 ORTHO05D003004 9.4e-06 54.3 158 25.9
BolC6t39177H Brassica oleracea HOM05D002915 ORTHO05D003004 9.4e-06 54.3 158 25.9
BraA07t31040Z Brassica rapa HOM05D006725 ORTHO05D008223 9.4e-06 54.3 158 26.6


User provided reference genes

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