Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G19346 Trifolium pratense HOM05D007176 ORTHO05D009050 4.5e-169 598.2 390 100.0
Lj5g0009846 Lotus japonicus HOM05D007176 ORTHO05D009050 1.1e-109 401.0 390 76.4
arahy.Tifrunner.gnm1.ann1.I5CDLA Arachis hypogaea HOM05D007176 ORTHO05D009050 7.4e-103 378.3 394 72.3
Medtr1g054625 Medicago truncatula HOM05D007176 ORTHO05D009050 1.6e-102 377.1 376 77.4
arahy.Tifrunner.gnm1.ann1.5B5G66 Arachis hypogaea HOM05D007176 ORTHO05D009050 2.1e-102 376.7 381 74.3
Ca_03573_v3 Cicer arietinum L. HOM05D007176 ORTHO05D009050 9.3e-98 361.3 394 73.6
Thecc.05G178200 Theobroma cacao HOM05D007176 ORTHO05D009050 4.6e-97 359.0 377 62.9
Duzib106G0399 Durio zibethinus HOM05D007176 ORTHO05D009050 5.7e-95 352.1 377 63.4
QL07p025011 Quercus lobata HOM05D007176 ORTHO05D009050 4.8e-94 349.0 371 74.4
Cfa020128 Carpinus fangiana HOM05D007176 ORTHO05D009050 2.4e-93 346.7 373 52.8
TAR633G1141 Trochodendron aralioides HOM05D007176 ORTHO05D009050 6.9e-93 345.1 377 72.4
Dinv16365 Davidia involucrata HOM05D007176 ORTHO05D009050 9.0e-93 344.7 390 61.8
TAR633G0683 Trochodendron aralioides HOM05D007176 ORTHO05D009050 3.4e-92 342.8 377 72.1
CiPaw.09G027300 Carya illinoinensis HOM05D007176 ORTHO05D009050 4.5e-92 342.4 379 72.6
Glyma.09G105500 Glycine max HOM05D007176 ORTHO05D009050 4.5e-92 342.4 378 73.3
RcHm_v2.0_Chr3g0478871 Rosa chinensis HOM05D007176 ORTHO05D009050 4.5e-92 342.4 376 63.8
Nn2g15783 Nelumbo nucifera HOM05D007176 ORTHO05D009050 7.6e-92 341.7 378 66.7
Manes.09G039600 Manihot esculenta HOM05D007176 ORTHO05D009050 1.1e-90 337.8 378 70.1
FvH4_6g21620 Fragaria vesca HOM05D007176 ORTHO05D009050 3.2e-90 336.3 376 70.2
Gohir.A04G053500 Gossypium hirsutum HOM05D007176 ORTHO05D009050 7.2e-90 335.1 377 61.8
FAN14G2546 Fragaria x ananassa HOM05D007176 ORTHO05D009050 9.3e-90 334.7 376 70.2
Hma1.2p1_0645F.1_g194890 Hydrangea macrophylla HOM05D007176 ORTHO05D009050 2.7e-89 333.2 393 69.2
FAN02G0922 Fragaria x ananassa HOM05D007176 ORTHO05D009050 3.5e-89 332.8 376 69.9
FAN05G5781 Fragaria x ananassa HOM05D007176 ORTHO05D009050 1.8e-88 330.5 376 69.4
Prupe.7G084400 Prunus persica HOM05D007176 ORTHO05D009050 1.1e-87 327.8 376 71.8
FAN09G2372 Fragaria x ananassa HOM05D007176 ORTHO05D009050 5.7e-87 325.5 376 68.6
Lju124C23T17 Lonicera japonica HOM05D007176 ORTHO05D009050 1.1e-85 321.2 357 73.4
Migut.K00028 Erythranthe guttata HOM05D007176 ORTHO05D009050 9.0e-85 318.2 374 69.0
Aa31LG10G13110 Aethionema arabicum HOM05D007176 ORTHO05D009050 1.2e-84 317.8 377 60.7
Eucgr.K01865 Eucalyptus grandis HOM05D007176 ORTHO05D009050 1.2e-84 317.8 376 68.1
GSVIVG01033441001 Vitis vinifera HOM05D007176 ORTHO05D009050 2.6e-84 316.6 350 68.9
Potri.006G195800 Populus trichocarpa HOM05D007176 ORTHO05D009050 3.4e-84 316.2 380 69.2
HanXRQChr10g0300591 Helianthus annuus HOM05D007176 ORTHO05D009050 5.9e-84 315.5 377 69.2
BcaC07g40246 Brassica carinata HOM05D007176 ORTHO05D009050 1.0e-83 314.7 377 60.5
EL10Ac3g06857 Beta vulgaris HOM05D007176 ORTHO05D009050 1.7e-83 313.9 372 66.9
ECA247G1245 Erigeron canadensis HOM05D007176 ORTHO05D009050 2.2e-83 313.5 377 69.2
Lalb_Chr02g0153821 Lupinus albus HOM05D007176 ORTHO05D009050 7.2e-82 308.5 376 69.1
Cpa.g.sc85.35 Carica papaya HOM05D007176 ORTHO05D009050 3.6e-81 306.2 378 68.3
A09p51090 Brassica napus HOM05D007176 ORTHO05D009050 6.1e-81 305.4 401 57.1
MD12G1053200 Malus domestica HOM05D007176 ORTHO05D009050 2.2e-78 297.0 390 66.2
Sabra06G0150500 Salix brachista HOM05D007176 ORTHO05D009050 2.0e-76 290.4 372 66.9
CANSAT64G0938 Cannabis sativa HOM05D007176 ORTHO05D009050 2.6e-76 290.0 377 63.9
THA.LOC104802720 Tarenaya hassleriana HOM05D007176 ORTHO05D009050 3.4e-76 289.7 378 54.8
C08p33910 Brassica napus HOM05D007176 ORTHO05D009050 4.5e-76 289.3 377 57.6
MD14G1051600 Malus domestica HOM05D007176 ORTHO05D009050 5.9e-76 288.9 377 58.6
Rhsim04G0094400 Rhododendron simsii HOM05D007176 ORTHO05D009050 1.4e-74 284.3 377 65.5
MBI01_g44281_MAGBIO Magnolia biondii HOM05D007176 ORTHO05D009050 2.5e-74 283.5 354 47.2
Sc13g0002490 Simmondsia chinensis HOM05D007176 ORTHO05D009050 1.4e-72 277.7 390 55.6
Haze_20048 Corylus avellana HOM05D007176 ORTHO05D009050 3.0e-72 276.6 395 44.3
Haze_20055 Corylus avellana HOM05D007176 ORTHO05D009050 3.0e-72 276.6 395 44.3
CDE04G3485 Ceratophyllum demersum HOM05D007176 ORTHO05D009050 5.1e-72 275.8 367 64.0
PGR142G3952 Punica granatum HOM05D007176 ORTHO05D009050 3.3e-71 273.1 390 60.8
SalBow1G6257 Salvia bowleyana HOM05D007176 ORTHO05D009050 4.4e-71 272.7 382 63.1
Gohir.D04G094700 Gossypium hirsutum HOM05D007176 ORTHO05D009050 2.8e-70 270.0 306 65.7
CARHR168930 Cardamine hirsuta HOM05D007176 ORTHO05D009050 3.7e-70 269.6 377 54.6
Os02g0281150 Oryza sativa ssp. japonica HOM05D007176 ORTHO05D009050 6.3e-70 268.9 386 58.0
AL5G40300 Arabidopsis lyrata HOM05D007176 ORTHO05D009050 1.1e-69 268.1 377 61.8
CSS0044198 Camellia sinensis var. sinensis HOM05D007176 ORTHO05D009050 7.0e-69 265.4 377 63.1
Thhalv10006065m.g Eutrema salsugineum HOM05D007176 ORTHO05D009050 1.2e-68 264.6 377 60.5
Sp5g04340 Schrenkiella parvula HOM05D007176 ORTHO05D009050 2.6e-68 263.5 377 51.7
Carub.0005s2528 Capsella rubella HOM05D007176 ORTHO05D009050 7.7e-68 261.9 377 61.5
Gorai.009G392400 Gossypium raimondii HOM05D007176 ORTHO05D009050 5.0e-67 259.2 329 62.6
Cc06_g15630 Coffea canephora HOM05D007176 ORTHO05D009050 8.5e-67 258.5 376 62.8
VMungo0720G0788 Vigna mungo HOM05D007176 ORTHO05D009050 5.5e-66 255.8 432 42.4
AT3G58530 Arabidopsis thaliana HOM05D007176 ORTHO05D009050 7.2e-66 255.4 377 59.7
DCAR_019856 Daucus carota HOM05D007176 ORTHO05D009050 1.2e-65 254.6 357 42.3
COL.COLO4_29390 Corchorus olitorius HOM05D007176 ORTHO05D009050 2.1e-65 253.8 357 56.3
Sopen06g001340 Solanum pennellii HOM05D007176 ORTHO05D009050 8.0e-65 251.9 378 56.6
BolC8t50987H Brassica oleracea HOM05D000032 ORTHO05D001620 8.8e-64 248.4 306 62.4
Hma1.2p1_0645F.1_g194900 Hydrangea macrophylla HOM05D007176 ORTHO05D009050 4.4e-63 246.1 282 76.2
CSS0035640 Camellia sinensis var. sinensis HOM05D007176 ORTHO05D009050 5.7e-63 245.7 377 60.7
Atru.BG.213.p Acer truncatum HOM05D007176 ORTHO05D009050 1.7e-62 244.2 371 62.3
Peaxi162Scf00258g00925 Petunia axillaris HOM05D007176 ORTHO05D009050 1.7e-62 244.2 369 62.9
AUR62032747 Chenopodium quinoa HOM05D007176 ORTHO05D009050 3.7e-62 243.0 295 71.2
PGSC0003DMG400029168 Solanum tuberosum HOM05D007176 ORTHO05D009050 3.7e-62 243.0 378 61.4
CAN.G111.5 Capsicum annuum HOM05D007176 ORTHO05D009050 6.3e-62 242.3 373 61.9
Actinidia17284 Actinidia chinensis HOM05D007176 ORTHO05D009050 4.1e-61 239.6 376 55.9
Solyc06g005380.3 Solanum lycopersicum HOM05D007176 ORTHO05D009050 9.1e-61 238.4 378 61.4
vmacro22113 Vaccinium macrocarpon HOM05D007176 ORTHO05D009050 1.2e-60 238.0 416 40.1
PSO541G4948 Papaver somniferum HOM05D007176 ORTHO05D009050 1.6e-60 237.7 282 70.9
Psat6g088000 Pisum sativum HOM05D007176 ORTHO05D009050 4.5e-60 236.1 390 62.1
Phvul.007G261900 Phaseolus vulgaris HOM05D007176 ORTHO05D009050 3.2e-58 229.9 259 79.9
Aqoxy279s002 Aquilegia oxysepala HOM05D007176 ORTHO05D009050 5.5e-58 229.2 377 61.5
Aqoxy2G00051 Aquilegia oxysepala HOM05D007176 ORTHO05D009050 5.5e-58 229.2 377 61.5
Ah.13g075580 Amaranthus hybridus HOM05D007176 ORTHO05D009050 1.6e-57 227.6 277 72.9
HPP92_010126 Vanilla planifolia HOM05D007176 ORTHO05D009050 6.8e-56 222.2 281 71.2
BraA09t40553Z Brassica rapa HOM05D000032 ORTHO05D001620 1.7e-54 217.6 307 57.3
Zm00001eb237210 Zea mays HOM05D007176 ORTHO05D009050 1.4e-53 214.5 381 55.4
PSO675G7508 Papaver somniferum HOM05D007176 ORTHO05D009050 3.1e-53 213.4 282 61.0
Lsat_1_v5_gn_9_26900 Lactuca sativa HOM05D007176 ORTHO05D009050 5.9e-52 209.1 376 43.4
BcaC02g10014 Brassica carinata HOM05D007176 ORTHO05D009050 1.3e-51 208.0 325 61.5
Nitab4.5_0008255g0020 Nicotiana tabacum HOM05D007176 ORTHO05D009050 1.9e-50 204.1 390 36.2
SEGI_09769 Sequoiadendron giganteum HOM05D007176 ORTHO05D009050 9.8e-47 191.8 319 61.8
BolC4t24963H Brassica oleracea HOM05D000032 ORTHO05D001620 8.3e-46 188.7 306 62.1
C04p33960 Brassica napus HOM05D007176 ORTHO05D009050 2.4e-45 187.2 306 61.4
Ciclev10012430m.g Citrus clementina HOM05D007176 ORTHO05D009050 1.1e-42 178.3 153 57.5
SGA_v2.0_scaffold274G46490 Striga asiatica HOM05D007176 ORTHO05D009050 1.6e-41 174.5 140 62.1
SMO118G0524 Selaginella moellendorffii HOM05D007176 ORTHO05D009050 2.1e-41 174.1 370 48.9
Atru.chr8.1185 Acer truncatum HOM05D007176 ORTHO05D009050 8.9e-40 168.7 252 69.4
Pp3c23_2930 Physcomitrium patens HOM05D007176 ORTHO05D009050 3.4e-39 166.8 374 46.3
Nitab4.5_0000009g0020 Nicotiana tabacum HOM05D007176 ORTHO05D009050 8.3e-38 162.2 436 33.5
arahy.Tifrunner.gnm1.ann1.0S64XP Arachis hypogaea HOM05D007176 ORTHO05D009050 1.4e-37 161.4 305 44.6
unitig_736.g22301 Utricularia gibba HOM05D007176 ORTHO05D009050 9.5e-34 148.7 434 46.5
Hund24823 Selenicereus undatus HOM05D007176 ORTHO05D009050 5.2e-32 142.9 143 53.1
AagrBONN_evm.TU.Sc2ySwM_228.1251 Anthoceros agrestis HOM05D007176 ORTHO05D009050 9.8e-31 138.7 375 46.1
HanXRQChr05g0140621 Helianthus annuus HOM05D007176 ORTHO05D009050 7.0e-29 132.5 132 56.8
HanXRQChr10g0316231 Helianthus annuus HOM05D007176 ORTHO05D009050 7.0e-29 132.5 132 56.8
ATR0001G043 Amborella trichopoda HOM05D007176 ORTHO05D009050 3.3e-26 123.6 85 68.2
A04p02540 Brassica napus HOM05D000032 ORTHO05D001620 5.6e-26 122.9 322 32.3
Hund24819 Selenicereus undatus HOM05D007176 ORTHO05D001610 7.8e-20 102.4 149 43.6
Mapoly0209s0007 Marchantia polymorpha HOM05D007176 ORTHO05D009050 2.5e-18 97.4 153 39.9
PRCOL_00005880 Prasinoderma coloniale HOM05D007176 ORTHO05D009050 1.5e-15 88.2 300 24.7
AUR62015309 Chenopodium quinoa HOM05D007176 ORTHO05D009050 2.0e-15 87.8 58 70.7
Medtr1g054600 Medicago truncatula HOM05D002729 ORTHO05D003163 3.8e-06 57.0 42 71.4
ClCG09G021800 Citrullus lanatus HOM05D002887 ORTHO05D003159 4.9e-06 56.6 369 22.8


User provided reference genes

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