Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G19327 Trifolium pratense HOM05D000764 ORTHO05D004953 0.0e+00 3836.2 1954 100.0
Medtr3g083500 Medicago truncatula HOM05D000764 ORTHO05D004953 0.0e+00 3493.4 1960 90.9
Ca_16376_v3 Cicer arietinum L. HOM05D000764 ORTHO05D004953 0.0e+00 3443.3 1950 90.5
Psat5g101160 Pisum sativum HOM05D000764 ORTHO05D004953 0.0e+00 3401.7 1959 89.8
Lj6g0018726 Lotus japonicus HOM05D000764 ORTHO05D004953 0.0e+00 3325.8 1962 86.7
Glyma.18G000100 Glycine max HOM05D000764 ORTHO05D004953 0.0e+00 3268.0 1962 85.7
Phvul.001G269300 Phaseolus vulgaris HOM05D000764 ORTHO05D004953 0.0e+00 3239.1 1962 84.7
Glyma.11G256800 Glycine max HOM05D000764 ORTHO05D004953 0.0e+00 3190.6 1962 84.1
arahy.Tifrunner.gnm1.ann1.ML2TY5 Arachis hypogaea HOM05D000764 ORTHO05D004953 0.0e+00 3187.1 1957 83.4
arahy.Tifrunner.gnm1.ann1.W7TQKX Arachis hypogaea HOM05D000764 ORTHO05D004953 0.0e+00 3169.8 1957 83.0
Lalb_Chr23g0278471 Lupinus albus HOM05D000764 ORTHO05D004953 0.0e+00 3120.9 1969 82.7
Cfa009565 Carpinus fangiana HOM05D000764 ORTHO05D004953 0.0e+00 2689.4 1999 71.0
CiPaw.13G176800 Carya illinoinensis HOM05D000764 ORTHO05D004953 0.0e+00 2653.6 1994 70.6
QL01p009034 Quercus lobata HOM05D000764 ORTHO05D004953 0.0e+00 2647.8 2019 70.0
Atru.chr3.2095 Acer truncatum HOM05D000764 ORTHO05D004953 0.0e+00 2592.8 2041 67.5
CSS0037597 Camellia sinensis var. sinensis HOM05D000764 ORTHO05D004953 0.0e+00 2580.4 1996 68.4
Dinv33723 Davidia involucrata HOM05D000764 ORTHO05D004953 0.0e+00 2573.5 2026 67.8
Haze_22943 Corylus avellana HOM05D000764 ORTHO05D004953 0.0e+00 2566.6 2121 66.1
Ciclev10014014m.g Citrus clementina HOM05D000764 ORTHO05D004953 0.0e+00 2543.5 1997 68.0
Manes.14G121800 Manihot esculenta HOM05D000764 ORTHO05D004953 0.0e+00 2542.7 1996 68.0
TWI32G0740 Tripterygium wilfordii HOM05D000764 ORTHO05D004953 0.0e+00 2501.1 2008 66.5
Prupe.6G003600 Prunus persica HOM05D000764 ORTHO05D004953 0.0e+00 2483.4 1990 67.7
Potri.001G004200 Populus trichocarpa HOM05D000764 ORTHO05D004953 0.0e+00 2482.2 1992 66.4
MD03G1004100 Malus domestica HOM05D000764 ORTHO05D004953 0.0e+00 2469.5 1989 67.2
Duzib128G0342 Durio zibethinus HOM05D000764 ORTHO05D004953 0.0e+00 2466.8 2000 66.0
CANSAT11G1226 Cannabis sativa HOM05D000764 ORTHO05D004953 0.0e+00 2464.5 1993 66.7
TWI60G0851 Tripterygium wilfordii HOM05D000764 ORTHO05D004953 0.0e+00 2464.1 2014 65.7
RcHm_v2.0_Chr5g0083741 Rosa chinensis HOM05D000764 ORTHO05D004953 0.0e+00 2452.6 1993 66.5
FvH4_3g45550 Fragaria vesca HOM05D000764 ORTHO05D004953 0.0e+00 2437.9 1991 65.9
Potri.003G220800 Populus trichocarpa HOM05D000764 ORTHO05D004953 0.0e+00 2432.5 1994 65.0
PGR119G0322 Punica granatum HOM05D000764 ORTHO05D004953 0.0e+00 2425.6 2008 64.6
CsaV3_1G041680 Cucumis sativus L. HOM05D000764 ORTHO05D004953 0.0e+00 2423.7 1995 65.2
FAN11G0762 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 2418.7 2007 65.3
Sed0024847 Sechium edule HOM05D000764 ORTHO05D004953 0.0e+00 2408.6 1990 64.8
ClCG03G014510 Citrullus lanatus HOM05D000764 ORTHO05D004953 0.0e+00 2381.7 2103 62.1
Gohir.A08G227900 Gossypium hirsutum HOM05D000764 ORTHO05D004953 0.0e+00 2378.6 1991 64.5
Gorai.004G264800 Gossypium raimondii HOM05D000764 ORTHO05D004953 0.0e+00 2370.5 1995 64.3
FAN21G0270 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 2365.9 2038 63.7
Gohir.D08G248200 Gossypium hirsutum HOM05D000764 ORTHO05D004953 0.0e+00 2364.3 2002 64.0
Eucgr.J01768 Eucalyptus grandis HOM05D000764 ORTHO05D004953 0.0e+00 2359.7 1989 65.0
FAN25G3812 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 2357.4 2002 64.7
Sabra01G0002900 Salix brachista HOM05D000764 ORTHO05D004953 0.0e+00 2353.9 2061 62.6
Sabra03G0164300 Salix brachista HOM05D000764 ORTHO05D004953 0.0e+00 2303.1 1983 63.8
Cc01_g00030 Coffea canephora HOM05D000764 ORTHO05D004953 0.0e+00 2283.8 2004 62.2
MELO3C015581.2 Cucumis melo HOM05D000764 ORTHO05D004953 0.0e+00 2278.8 2107 60.1
GSVIVG01025465001 Vitis vinifera HOM05D000764 ORTHO05D004953 0.0e+00 2274.2 1841 66.1
FAN16G0168 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 2246.9 2012 62.3
Sopen04g010120 Solanum pennellii HOM05D000764 ORTHO05D004953 0.0e+00 2243.4 2002 61.7
CAN.G1237.43 Capsicum annuum HOM05D000764 ORTHO05D004953 0.0e+00 2243.0 2007 61.5
MSTRG.16793 Avicennia marina HOM05D000764 ORTHO05D004953 0.0e+00 2222.2 2001 61.5
Solyc04g039950.4 Solanum lycopersicum HOM05D000764 ORTHO05D004953 0.0e+00 2219.1 1994 61.6
Oeu021897.1 Olea europaea HOM05D000764 ORTHO05D004953 0.0e+00 2212.6 2069 60.4
THA.LOC104810327 Tarenaya hassleriana HOM05D000764 ORTHO05D004953 0.0e+00 2209.1 1983 61.2
DCAR_029576 Daucus carota HOM05D000764 ORTHO05D004953 0.0e+00 2195.6 2001 59.3
Nn7g35865 Nelumbo nucifera HOM05D000764 ORTHO05D004953 0.0e+00 2193.3 2009 60.4
Rhsim03G0149100 Rhododendron simsii HOM05D000764 ORTHO05D004953 0.0e+00 2189.5 2032 60.1
CARHR044980 Cardamine hirsuta HOM05D000764 ORTHO05D004953 0.0e+00 2183.7 1983 60.2
Thhalv10011178m.g Eutrema salsugineum HOM05D000764 ORTHO05D004953 0.0e+00 2178.7 1981 60.3
Migut.L00381 Erythranthe guttata HOM05D000764 ORTHO05D004953 0.0e+00 2171.7 1997 60.8
Sp1g41000 Schrenkiella parvula HOM05D000764 ORTHO05D004953 0.0e+00 2168.7 1984 59.9
EL10Ac4g10385 Beta vulgaris HOM05D000764 ORTHO05D004953 0.0e+00 2158.6 1984 58.7
AT1G55325 Arabidopsis thaliana HOM05D000764 ORTHO05D004953 0.0e+00 2157.1 1986 59.6
Carub.0001s4383 Capsella rubella HOM05D000764 ORTHO05D004953 0.0e+00 2156.3 1984 59.5
AL1G63370 Arabidopsis lyrata HOM05D000764 ORTHO05D004953 0.0e+00 2155.9 1986 59.5
Hund07595 Selenicereus undatus HOM05D000764 ORTHO05D004953 0.0e+00 2154.0 2060 58.1
Aqoxy3G01104 Aquilegia oxysepala HOM05D000764 ORTHO05D004953 0.0e+00 2139.0 2010 58.8
ECA233G5672 Erigeron canadensis HOM05D000764 ORTHO05D004953 0.0e+00 2119.7 1981 60.0
Dinv06519 Davidia involucrata HOM05D000764 ORTHO05D004953 0.0e+00 2115.9 1674 67.5
MBI11_g24613_MAGBIO Magnolia biondii HOM05D000764 ORTHO05D004953 0.0e+00 2112.4 1989 58.1
Aa31LG10G1120 Aethionema arabicum HOM05D000764 ORTHO05D004953 0.0e+00 2107.0 1995 58.3
BraA06t23242Z Brassica rapa HOM05D000764 ORTHO05D004953 0.0e+00 2105.1 2003 58.5
A06p00260 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 2101.6 1971 59.1
C06p10270 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 2100.9 1971 58.9
A05p17530 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 2094.7 1973 58.8
THA.LOC104822680 Tarenaya hassleriana HOM05D000764 ORTHO05D004953 0.0e+00 2093.5 1975 58.5
BraA05t20647Z Brassica rapa HOM05D000764 ORTHO05D004953 0.0e+00 2088.9 1992 58.5
BolC6t36102H Brassica oleracea HOM05D000764 ORTHO05D004953 0.0e+00 2085.1 2002 58.1
BolC6t36790H Brassica oleracea HOM05D000764 ORTHO05D004953 0.0e+00 2079.7 2007 58.0
C06p15980 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 2067.7 1977 58.3
HanXRQChr13g0405791 Helianthus annuus HOM05D000764 ORTHO05D004953 0.0e+00 2061.6 1997 58.8
AUR62040904 Chenopodium quinoa HOM05D000764 ORTHO05D004953 0.0e+00 2045.8 1988 55.8
PSO339G2492 Papaver somniferum HOM05D000764 ORTHO05D004953 0.0e+00 2011.1 2003 57.3
VMungo1080G1230 Vigna mungo HOM05D000764 ORTHO05D004953 0.0e+00 1984.5 1219 83.5
SGA_v2.0_scaffold58G20565 Striga asiatica HOM05D000764 ORTHO05D004953 0.0e+00 1979.9 2155 54.7
Lsat_1_v5_gn_6_53100 Lactuca sativa HOM05D000764 ORTHO05D004953 0.0e+00 1977.2 2004 57.6
Peaxi162Scf00970g00016 Petunia axillaris HOM05D000764 ORTHO05D004953 0.0e+00 1937.2 1877 57.9
vmacro06919 Vaccinium macrocarpon HOM05D000764 ORTHO05D004953 0.0e+00 1931.4 1909 57.4
BcaC08g44192 Brassica carinata HOM05D000764 ORTHO05D004953 0.0e+00 1922.1 1974 55.7
Nitab4.5_0000799g0100 Nicotiana tabacum HOM05D000764 ORTHO05D004953 0.0e+00 1864.4 1785 57.7
ATR0490G003 Amborella trichopoda HOM05D000764 ORTHO05D004953 0.0e+00 1797.3 2042 51.4
Sc21g0002730 Simmondsia chinensis HOM05D000764 ORTHO05D004953 0.0e+00 1770.0 1672 58.7
Thecc.05G133300 Theobroma cacao HOM05D000764 ORTHO05D004953 0.0e+00 1760.7 1427 66.9
Nitab4.5_0003134g0150 Nicotiana tabacum HOM05D000764 ORTHO05D004953 0.0e+00 1751.5 1760 56.1
SalBow6G5302 Salvia bowleyana HOM05D000764 ORTHO05D004953 0.0e+00 1626.7 1494 59.8
Hma1.2p1_0449F.1_g155090 Hydrangea macrophylla HOM05D000764 ORTHO05D004953 0.0e+00 1595.1 1371 63.4
Zm00001eb379470 Zea mays HOM05D000764 ORTHO05D004953 0.0e+00 1594.7 2000 48.5
Lj2A763G35 Lonicera japonica HOM05D000764 ORTHO05D004953 0.0e+00 1581.6 1724 55.0
Nitab4.5_0005544g0060 Nicotiana tabacum HOM05D000764 ORTHO05D004953 0.0e+00 1408.3 2007 44.9
SEGI_09587 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 0.0e+00 1345.1 1910 44.3
TAR623G0710 Trochodendron aralioides HOM05D000764 ORTHO05D004953 0.0e+00 1330.5 1194 61.8
SEGI_04814 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 0.0e+00 1224.9 1611 45.4
SalBow6G3750 Salvia bowleyana HOM05D000764 ORTHO05D004953 0.0e+00 1212.6 1188 58.8
CDE10G0573 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 0.0e+00 1188.7 1418 49.1
Cpa.g.sc119.44 Carica papaya HOM05D000764 ORTHO05D004953 4.0e-306 1055.8 775 71.2
COL.COLO4_07280 Corchorus olitorius HOM05D000764 ORTHO05D004953 2.0e-302 1043.5 772 69.9
TAR623G0474 Trochodendron aralioides HOM05D000764 ORTHO05D004953 2.3e-293 1013.4 772 68.9
CDE10G0575 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 5.4e-271 939.1 981 52.9
Mapoly0029s0052 Marchantia polymorpha HOM05D000764 ORTHO05D004953 1.4e-266 924.5 2145 33.8
AUR62019164 Chenopodium quinoa HOM05D000764 ORTHO05D004953 4.4e-265 919.5 835 57.8
Aqoxy368s001 Aquilegia oxysepala HOM05D000764 ORTHO05D004953 2.0e-257 894.0 1039 50.1
Pp3c11_22280 Physcomitrium patens HOM05D000764 ORTHO05D004953 1.4e-250 871.3 2126 33.3
AUR62019165 Chenopodium quinoa HOM05D000764 ORTHO05D004953 3.4e-241 840.1 1196 44.1
vmacro06915 Vaccinium macrocarpon HOM05D000764 ORTHO05D004953 3.4e-233 813.5 1290 41.2
AagrBONN_evm.TU.Sc2ySwM_117.2245 Anthoceros agrestis HOM05D000764 ORTHO05D004953 6.8e-205 719.5 1962 32.5
SHI31301 Sapria himalayana HOM05D000764 ORTHO05D004953 5.9e-193 679.9 1010 43.3
SMO365G0018 Selaginella moellendorffii HOM05D000764 ORTHO05D004953 8.9e-181 639.4 1920 30.8
Migut.L00371 Erythranthe guttata HOM05D000764 ORTHO05D004953 3.2e-170 604.4 428 69.2
Migut.L00380 Erythranthe guttata HOM05D000764 ORTHO05D004953 3.9e-168 597.4 660 55.0
Pp3c7_4610 Physcomitrium patens HOM05D000764 ORTHO05D004953 4.3e-167 594.0 1601 30.8
Os05g0447500 Oryza sativa ssp. japonica HOM05D000764 ORTHO05D004953 2.1e-161 575.1 582 54.0
SalBow6G2556 Salvia bowleyana HOM05D000764 ORTHO05D004953 2.1e-158 565.1 539 58.1
VMungo1080G0389 Vigna mungo HOM05D000764 ORTHO05D004953 4.6e-153 547.4 378 78.8
Actinidia02700 Actinidia chinensis HOM05D000764 ORTHO05D004953 5.5e-130 470.7 319 71.8
Lj2A763G34 Lonicera japonica HOM05D000764 ORTHO05D004953 1.5e-127 462.6 506 53.8
Psat6g137480 Pisum sativum HOM05D000493 ORTHO05D004953 5.0e-123 447.6 334 72.8
CDE10G0477 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 7.4e-111 407.1 785 38.5
Actinidia02701 Actinidia chinensis HOM05D000764 ORTHO05D004953 3.9e-104 384.8 320 65.0
SHI31298 Sapria himalayana HOM05D000764 ORTHO05D004953 1.5e-103 382.9 529 45.6
SEGI_19391 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 3.6e-97 361.7 422 49.3
VMungo1080G1023 Vigna mungo HOM05D000764 ORTHO05D004953 1.8e-96 359.4 193 91.7
Os05g0447580 Oryza sativa ssp. japonica HOM05D000764 ORTHO05D004953 4.4e-95 354.8 358 54.2
Actinidia15647 Actinidia chinensis HOM05D000764 ORTHO05D004953 5.9e-92 344.4 219 78.1
CiPaw.14G136600 Carya illinoinensis HOM05D000764 ORTHO05D004953 4.0e-88 331.6 237 72.2
Aqoxy6G02541 Aquilegia oxysepala HOM05D000764 ORTHO05D004953 6.8e-88 330.9 284 62.3
Hma1.2p1_0449F.1_g155100 Hydrangea macrophylla HOM05D000764 ORTHO05D004953 1.1e-82 313.5 210 73.8
VMungo1080G1824 Vigna mungo HOM05D000764 ORTHO05D004953 7.2e-82 310.8 165 90.9
VMungo1383G3575 Vigna mungo HOM05D000764 ORTHO05D004953 3.0e-80 305.4 387 52.2
COL.COLO4_07282 Corchorus olitorius HOM05D000764 ORTHO05D004953 9.2e-69 267.3 164 79.9
vmacro06920 Vaccinium macrocarpon HOM05D000764 ORTHO05D004953 2.8e-65 255.8 160 77.5
CBR_g38308 Chara braunii HOM05D000019 ORTHO05D000048 2.6e-63 249.2 1093 25.8
CAN.G610.44 Capsicum annuum HOM05D000764 ORTHO05D004953 2.2e-62 246.1 311 44.1
Cpa.g.sc119.45 Carica papaya HOM05D000764 ORTHO05D004953 2.0e-60 239.6 211 63.0
CAN.G1237.21 Capsicum annuum HOM05D000764 ORTHO05D004953 1.5e-55 223.4 270 45.2
CAN.G1237.45 Capsicum annuum HOM05D000764 ORTHO05D004953 7.1e-53 214.5 425 36.0
SEGI_38078 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 9.2e-53 214.2 156 67.9
Dinv39954 Davidia involucrata HOM05D000764 ORTHO05D004953 1.3e-51 210.3 294 45.9
CAN.G1237.46 Capsicum annuum HOM05D000764 ORTHO05D004953 1.7e-46 193.4 232 52.6
CDE10G1322 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 3.8e-46 192.2 125 71.2
CDE10G0100 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 1.5e-42 180.3 323 37.8
HPP92_009741 Vanilla planifolia HOM05D000764 ORTHO05D004953 1.1e-40 174.1 605 30.2
Dinv39953 Davidia involucrata HOM05D000100 ORTHO05D000052 4.8e-33 148.7 123 67.5
Psat5g238800 Pisum sativum HOM05D000764 ORTHO05D002785 9.0e-32 144.4 85 94.1
Psat5g238960 Pisum sativum HOM05D000764 ORTHO05D002785 9.0e-32 144.4 85 94.1
CAN.G1237.22 Capsicum annuum HOM05D000764 ORTHO05D004953 1.9e-29 136.7 99 68.7
Psat7g241120 Pisum sativum HOM05D002716 ORTHO05D003324 9.3e-29 134.4 139 65.5
Psat2g093280 Pisum sativum HOM05D002199 ORTHO05D007829 1.2e-28 134.0 119 72.3
Nn1g03529 Nelumbo nucifera HOM05D000764 ORTHO05D004953 1.9e-26 126.7 68 77.9
Rhsim12G0118500 Rhododendron simsii HOM05D000764 ORTHO05D004953 4.3e-26 125.6 461 32.1
CAN.G1248.23 Capsicum annuum HOM05D000764 ORTHO05D009197 1.3e-22 114.0 130 54.6
Oeu017835.1 Olea europaea HOM05D000764 ORTHO05D004953 8.4e-22 111.3 110 54.5
Thhalv10012088m.g Eutrema salsugineum HOM05D000764 ORTHO05D004953 1.5e-18 100.5 148 44.6
SHI31300 Sapria himalayana HOM05D000764 ORTHO05D004953 2.1e-17 96.7 64 68.8
SHI31296 Sapria himalayana HOM05D000764 ORTHO05D004953 6.9e-16 91.7 105 47.6
CiPaw.14G136500 Carya illinoinensis HOM05D000764 ORTHO05D004953 1.2e-15 90.9 67 70.1
SHI31294 Sapria himalayana HOM05D000764 ORTHO05D004953 2.0e-15 90.1 115 47.0
SHI31299 Sapria himalayana HOM05D000764 ORTHO05D004953 4.5e-15 89.0 140 45.0
BcaC03g15090 Brassica carinata HOM05D000951 ORTHO05D032059 1.4e-13 84.0 44 81.8
BolC2t08722H Brassica oleracea HOM05D000951 ORTHO05D032059 1.4e-13 84.0 44 81.8
Sc16g0012210 Simmondsia chinensis HOM05D000764 ORTHO05D004953 1.9e-13 83.6 153 37.9
CAN.G1237.23 Capsicum annuum HOM05D000764 ORTHO05D010647 1.0e-06 61.2 108 41.7
MELO3C030779.2 Cucumis melo HOM05D000764 ORTHO05D004953 1.0e-06 61.2 92 39.1
CBR_g38302 Chara braunii HOM05D000019 ORTHO05D000353 5.0e-06 58.9 182 28.6
SMO358G0275 Selaginella moellendorffii HOM05D015080 ORTHO05D019362 5.0e-06 58.9 67 38.8


User provided reference genes

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