Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G19313 Trifolium pratense HOM05D000069 ORTHO05D051475 5.3e-33 143.7 68 100.0
TPR.G906 Trifolium pratense HOM05D000069 ORTHO05D051475 1.4e-20 102.4 70 75.7
Nitab4.5_0002076g0090 Nicotiana tabacum HOM05D000069 ORTHO05D000060 4.1e-09 64.3 71 46.5
TPR.G7064 Trifolium pratense HOM05D000069 ORTHO05D000060 7.0e-09 63.5 70 50.0
Medtr4g080730 Medicago truncatula HOM05D000069 ORTHO05D000060 1.6e-08 62.4 70 50.0
arahy.Tifrunner.gnm1.ann1.MKN50B Arachis hypogaea HOM05D000069 ORTHO05D000060 3.5e-08 61.2 69 46.4
Glyma.12G130700 Glycine max HOM05D000069 ORTHO05D000060 4.5e-08 60.8 69 46.4
Cc05_g13770 Coffea canephora HOM05D000069 ORTHO05D000060 5.9e-08 60.5 68 44.1
Glyma.12G131532 Glycine max HOM05D000069 ORTHO05D000060 5.9e-08 60.5 73 46.6
Medtr4g080700 Medicago truncatula HOM05D000069 ORTHO05D000060 7.7e-08 60.1 70 48.6
arahy.Tifrunner.gnm1.ann1.GS3Z0S Arachis hypogaea HOM05D000069 ORTHO05D000060 1.0e-07 59.7 71 45.1
Glyma.06G272600 Glycine max HOM05D000069 ORTHO05D000060 1.0e-07 59.7 69 46.4
Glyma.06G273200 Glycine max HOM05D000069 ORTHO05D000060 1.0e-07 59.7 74 41.9
Glyma.06G273500 Glycine max HOM05D000069 ORTHO05D000060 1.0e-07 59.7 74 41.9
Glyma.06G274100 Glycine max HOM05D000069 ORTHO05D000060 1.0e-07 59.7 69 46.4
Nitab4.5_0007975g0020 Nicotiana tabacum HOM05D000069 ORTHO05D000060 1.0e-07 59.7 69 40.6
VMungo1127G0125 Vigna mungo HOM05D000069 ORTHO05D000060 1.0e-07 59.7 73 45.2
VMungo1127G0231 Vigna mungo HOM05D000069 ORTHO05D000060 1.0e-07 59.7 72 45.8
arahy.Tifrunner.gnm1.ann1.ZJL2S0 Arachis hypogaea HOM05D000069 ORTHO05D000060 1.3e-07 59.3 71 43.7
Duzib192G0650 Durio zibethinus HOM05D000069 ORTHO05D000060 1.3e-07 59.3 74 48.6
VMungo1127G0146 Vigna mungo HOM05D000069 ORTHO05D000060 1.3e-07 59.3 73 43.8
CAN.G1286.2 Capsicum annuum HOM05D000069 ORTHO05D000060 1.7e-07 58.9 72 43.1
Lj3g0016346 Lotus japonicus HOM05D000069 ORTHO05D000060 1.7e-07 58.9 71 49.3
VMungo1127G1654 Vigna mungo HOM05D000069 ORTHO05D000060 2.3e-07 58.5 72 44.4
Ca_03844_v3 Cicer arietinum L. HOM05D000069 ORTHO05D000060 2.9e-07 58.2 71 47.9
COL.COLO4_31309 Corchorus olitorius HOM05D000069 ORTHO05D000060 2.9e-07 58.2 70 44.3
Duzib235G1044 Durio zibethinus HOM05D000069 ORTHO05D000060 2.9e-07 58.2 74 44.6
Phvul.011G131901 Phaseolus vulgaris HOM05D000069 ORTHO05D000060 2.9e-07 58.2 72 45.8
Glyma.06G283100 Glycine max HOM05D000069 ORTHO05D000060 3.8e-07 57.8 72 41.7
Lj3g0015110 Lotus japonicus HOM05D000069 ORTHO05D000060 3.8e-07 57.8 71 40.8
Lj3g0023200 Lotus japonicus HOM05D000069 ORTHO05D000060 3.8e-07 57.8 71 40.8
Phvul.011G131200 Phaseolus vulgaris HOM05D000069 ORTHO05D000060 3.8e-07 57.8 72 44.4
Phvul.011G132100 Phaseolus vulgaris HOM05D000069 ORTHO05D000060 3.8e-07 57.8 72 41.7
Phvul.011G132800 Phaseolus vulgaris HOM05D000069 ORTHO05D000060 3.8e-07 57.8 72 41.7
Nitab4.5_0013807g0010 Nicotiana tabacum HOM05D000069 ORTHO05D000060 5.0e-07 57.4 72 44.4
Phvul.011G127000 Phaseolus vulgaris HOM05D000069 ORTHO05D000060 5.0e-07 57.4 72 44.4
Phvul.011G132000 Phaseolus vulgaris HOM05D000069 ORTHO05D000060 5.0e-07 57.4 72 44.4
Glyma.06G278200 Glycine max HOM05D000069 ORTHO05D000060 6.6e-07 57.0 72 38.9
Glyma.06G279200 Glycine max HOM05D000069 ORTHO05D000060 6.6e-07 57.0 72 38.9
Glyma.12G131300 Glycine max HOM05D000069 ORTHO05D000060 6.6e-07 57.0 69 43.5
Glyma.12G131400 Glycine max HOM05D000069 ORTHO05D000060 6.6e-07 57.0 69 43.5
Oeu039931.1 Olea europaea HOM05D000069 ORTHO05D000060 6.6e-07 57.0 73 42.5
Oeu039933.1 Olea europaea HOM05D000069 ORTHO05D000060 6.6e-07 57.0 73 42.5
Oeu041783.1 Olea europaea HOM05D000069 ORTHO05D000060 8.6e-07 56.6 72 43.1
Peaxi162Scf00692g00024 Petunia axillaris HOM05D000069 ORTHO05D000060 8.6e-07 56.6 70 40.0
Actinidia10964 Actinidia chinensis HOM05D000069 ORTHO05D000060 1.1e-06 56.2 69 43.5
Glyma.06G273400 Glycine max HOM05D000069 ORTHO05D000060 1.1e-06 56.2 69 46.4
Glyma.06G278000 Glycine max HOM05D000069 ORTHO05D000060 1.1e-06 56.2 72 41.7
Glyma.06G279100 Glycine max HOM05D000069 ORTHO05D000060 1.1e-06 56.2 72 41.7
Glyma.06G279900 Glycine max HOM05D000069 ORTHO05D000060 1.1e-06 56.2 72 41.7
Glyma.12G123500 Glycine max HOM05D000069 ORTHO05D000060 1.1e-06 56.2 72 40.3
Lj1A1197T81 Lonicera japonica HOM05D000069 ORTHO05D000060 1.1e-06 56.2 72 41.7
Nitab4.5_0000608g0110 Nicotiana tabacum HOM05D000069 ORTHO05D000060 1.1e-06 56.2 70 42.9
Peaxi162Scf00406g00615 Petunia axillaris HOM05D000069 ORTHO05D000060 1.1e-06 56.2 70 44.3
TWI38G1759 Tripterygium wilfordii HOM05D000069 ORTHO05D000060 1.1e-06 56.2 70 41.4
Duzib235G0875 Durio zibethinus HOM05D000069 ORTHO05D000060 1.5e-06 55.8 72 41.7
Glyma.11G144900 Glycine max HOM05D000069 ORTHO05D000060 1.5e-06 55.8 72 40.3
Gohir.D05G158333 Gossypium hirsutum HOM05D000069 ORTHO05D000060 1.5e-06 55.8 72 41.7
Lj3g0018314 Lotus japonicus HOM05D000069 ORTHO05D000060 1.5e-06 55.8 71 39.4
Lj3g0026706 Lotus japonicus HOM05D000069 ORTHO05D000060 1.5e-06 55.8 71 39.4
Phvul.011G131400 Phaseolus vulgaris HOM05D000069 ORTHO05D000060 1.5e-06 55.8 72 41.7
Psat7g164480 Pisum sativum HOM05D000069 ORTHO05D000060 1.5e-06 55.8 70 42.9
Prupe.3G122200 Prunus persica HOM05D000069 ORTHO05D000060 1.5e-06 55.8 70 41.4
QL05p046361 Quercus lobata HOM05D000069 ORTHO05D000060 1.5e-06 55.8 71 39.4
Rhsim06G0132600 Rhododendron simsii HOM05D000069 ORTHO05D000060 1.5e-06 55.8 69 42.0
Thecc.06G171700 Theobroma cacao HOM05D000069 ORTHO05D000060 1.5e-06 55.8 71 40.8
TPR.G10557 Trifolium pratense HOM05D000069 ORTHO05D000060 1.5e-06 55.8 72 44.4
arahy.Tifrunner.gnm1.ann1.A8GULN Arachis hypogaea HOM05D000069 ORTHO05D000060 1.9e-06 55.5 71 39.4
arahy.Tifrunner.gnm1.ann1.UNZM7G Arachis hypogaea HOM05D000069 ORTHO05D000060 1.9e-06 55.5 71 39.4
Glyma.06G273800 Glycine max HOM05D000069 ORTHO05D000060 1.9e-06 55.5 74 39.2
Glyma.08G116900 Glycine max HOM05D000069 ORTHO05D008115 1.9e-06 55.5 71 39.4
Lj1C685T2 Lonicera japonica HOM05D000069 ORTHO05D000060 1.9e-06 55.5 71 40.8
MD17G1232400 Malus domestica HOM05D000069 ORTHO05D000060 1.9e-06 55.5 70 41.4
Phvul.011G126700 Phaseolus vulgaris HOM05D000069 ORTHO05D000060 1.9e-06 55.5 73 39.7
Phvul.011G133200 Phaseolus vulgaris HOM05D000069 ORTHO05D000060 1.9e-06 55.5 72 41.7
Actinidia10968 Actinidia chinensis HOM05D000069 ORTHO05D000060 2.5e-06 55.1 68 41.2
Actinidia10969 Actinidia chinensis HOM05D000069 ORTHO05D000060 2.5e-06 55.1 68 41.2
Duzib147G0306 Durio zibethinus HOM05D000069 ORTHO05D000060 2.5e-06 55.1 70 45.7
Gohir.A05G155600 Gossypium hirsutum HOM05D000069 ORTHO05D000060 2.5e-06 55.1 74 39.2
Nitab4.5_0005843g0020 Nicotiana tabacum HOM05D000069 ORTHO05D000060 2.5e-06 55.1 72 43.1
Nitab4.5_0012517g0020 Nicotiana tabacum HOM05D000069 ORTHO05D000060 2.5e-06 55.1 72 45.8
Oeu041777.1 Olea europaea HOM05D000069 ORTHO05D000060 2.5e-06 55.1 72 44.4
Peaxi162Scf00674g00111 Petunia axillaris HOM05D000069 ORTHO05D000060 2.5e-06 55.1 72 45.8
Phvul.011G130900 Phaseolus vulgaris HOM05D000069 ORTHO05D000060 2.5e-06 55.1 72 40.3
Phvul.011G134000 Phaseolus vulgaris HOM05D000069 ORTHO05D000060 2.5e-06 55.1 72 41.7
Zm00001eb380300 Zea mays HOM05D000069 ORTHO05D000060 2.5e-06 55.1 72 36.1
Aqoxy3G01121 Aquilegia oxysepala HOM05D000069 ORTHO05D000060 3.3e-06 54.7 69 40.6
CAN.G641.12 Capsicum annuum HOM05D000069 ORTHO05D000060 3.3e-06 54.7 70 41.4
CAN.G915.6 Capsicum annuum HOM05D000069 ORTHO05D000060 3.3e-06 54.7 70 41.4
Haze_06252 Corylus avellana HOM05D000069 ORTHO05D000060 3.3e-06 54.7 72 41.7
Glyma.12G127300 Glycine max HOM05D000069 ORTHO05D000060 3.3e-06 54.7 72 38.9
Hma1.2p1_0155F.1_g068220 Hydrangea macrophylla HOM05D000069 ORTHO05D000060 3.3e-06 54.7 72 41.7
MD09G1238700 Malus domestica HOM05D000002 ORTHO05D000001 3.3e-06 54.7 69 42.0
Oeu041774.1 Olea europaea HOM05D000069 ORTHO05D000060 3.3e-06 54.7 72 44.4
Oeu041775.1 Olea europaea HOM05D000069 ORTHO05D000060 3.3e-06 54.7 72 44.4
Oeu041776.1 Olea europaea HOM05D000069 ORTHO05D000060 3.3e-06 54.7 72 44.4
Oeu041785.1 Olea europaea HOM05D000069 ORTHO05D000060 3.3e-06 54.7 72 43.1
Peaxi162Scf00262g00149 Petunia axillaris HOM05D000069 ORTHO05D000060 3.3e-06 54.7 72 43.1
Psat0s4087g0080 Pisum sativum HOM05D000069 ORTHO05D000060 3.3e-06 54.7 72 43.1
Prupe.3G122100 Prunus persica HOM05D000069 ORTHO05D000060 3.3e-06 54.7 70 40.0
Rhsim09G0025100 Rhododendron simsii HOM05D000069 ORTHO05D000060 3.3e-06 54.7 69 43.5
TAR627G0072 Trochodendron aralioides HOM05D000069 ORTHO05D000060 3.3e-06 54.7 74 43.2
TAR698G0002 Trochodendron aralioides HOM05D000069 ORTHO05D000060 3.3e-06 54.7 74 43.2
Actinidia10965 Actinidia chinensis HOM05D000069 ORTHO05D000060 4.2e-06 54.3 69 39.1
Aqoxy1G02083 Aquilegia oxysepala HOM05D000069 ORTHO05D000060 4.2e-06 54.3 76 40.8
Aqoxy4G00437 Aquilegia oxysepala HOM05D000069 ORTHO05D000060 4.2e-06 54.3 70 42.9
CSS0044278 Camellia sinensis var. sinensis HOM05D000069 ORTHO05D000060 4.2e-06 54.3 72 43.1
CAN.G57.6 Capsicum annuum HOM05D000069 ORTHO05D000060 4.2e-06 54.3 70 41.4
Ca_03952_v3 Cicer arietinum L. HOM05D000069 ORTHO05D000060 4.2e-06 54.3 72 41.7
Cc10_g04820 Coffea canephora HOM05D000069 ORTHO05D000060 4.2e-06 54.3 73 37.0
COL.COLO4_33690 Corchorus olitorius HOM05D000069 ORTHO05D000060 4.2e-06 54.3 70 44.3
Duzib147G0074 Durio zibethinus HOM05D000069 ORTHO05D000060 4.2e-06 54.3 70 44.3
Glyma.12G131100 Glycine max HOM05D000069 ORTHO05D000060 4.2e-06 54.3 75 41.3
Gohir.1Z049416 Gossypium hirsutum HOM05D000069 ORTHO05D000060 4.2e-06 54.3 72 38.9
Gohir.D06G136601 Gossypium hirsutum HOM05D000069 ORTHO05D000060 4.2e-06 54.3 72 38.9
Gorai.010G158800 Gossypium raimondii HOM05D000069 ORTHO05D000060 4.2e-06 54.3 72 38.9
HanXRQChr16g0518681 Helianthus annuus HOM05D000069 ORTHO05D000060 4.2e-06 54.3 69 43.5
Hma1.2p1_0178F.1_g078890 Hydrangea macrophylla HOM05D000069 ORTHO05D000060 4.2e-06 54.3 70 41.4
MD09G1238800 Malus domestica HOM05D000069 ORTHO05D000060 4.2e-06 54.3 69 39.1
MD09G1239100 Malus domestica HOM05D000069 ORTHO05D000060 4.2e-06 54.3 70 41.4
Manes.04G163000 Manihot esculenta HOM05D000069 ORTHO05D000060 4.2e-06 54.3 70 42.9
Oeu041786.1 Olea europaea HOM05D000069 ORTHO05D000060 4.2e-06 54.3 72 44.4
PSO407G0405 Papaver somniferum HOM05D000069 ORTHO05D000060 4.2e-06 54.3 67 47.8
Prupe.3G122700 Prunus persica HOM05D000069 ORTHO05D000060 4.2e-06 54.3 70 38.6
PGR004G0604 Punica granatum HOM05D000069 ORTHO05D000060 4.2e-06 54.3 66 42.4
CSS0009637 Camellia sinensis var. sinensis HOM05D000069 ORTHO05D000060 5.5e-06 53.9 69 44.9
CSS0013713 Camellia sinensis var. sinensis HOM05D000069 ORTHO05D000060 5.5e-06 53.9 69 44.9
CSS0037247 Camellia sinensis var. sinensis HOM05D000069 ORTHO05D000060 5.5e-06 53.9 68 41.2
CSS0048405 Camellia sinensis var. sinensis HOM05D000069 ORTHO05D000060 5.5e-06 53.9 68 41.2
Cfa000596 Carpinus fangiana HOM05D000069 ORTHO05D000060 5.5e-06 53.9 72 41.7
Duzib147G0148 Durio zibethinus HOM05D000069 ORTHO05D000060 5.5e-06 53.9 70 44.3
Duzib147G0220 Durio zibethinus HOM05D000069 ORTHO05D000060 5.5e-06 53.9 70 44.3
Duzib147G1681 Durio zibethinus HOM05D000069 ORTHO05D000060 5.5e-06 53.9 70 44.3
Duzib192G0717 Durio zibethinus HOM05D000069 ORTHO05D000060 5.5e-06 53.9 74 37.8
Eucgr.D00513 Eucalyptus grandis HOM05D000069 ORTHO05D000060 5.5e-06 53.9 72 41.7
Gohir.A05G155500 Gossypium hirsutum HOM05D000069 ORTHO05D000060 5.5e-06 53.9 73 41.1
Gohir.D10G032400 Gossypium hirsutum HOM05D000069 ORTHO05D000060 5.5e-06 53.9 72 40.3
Gorai.011G034200 Gossypium raimondii HOM05D000069 ORTHO05D000060 5.5e-06 53.9 72 40.3
Hma1.2p1_0155F.1_g068230 Hydrangea macrophylla HOM05D000069 ORTHO05D000060 5.5e-06 53.9 72 41.7
Lalb_Chr19g0134891 Lupinus albus HOM05D000069 ORTHO05D000060 5.5e-06 53.9 72 41.7
Oeu008139.1 Olea europaea HOM05D000069 ORTHO05D000060 5.5e-06 53.9 72 40.3
Peaxi162Scf00674g00212 Petunia axillaris HOM05D000069 ORTHO05D000060 5.5e-06 53.9 72 43.1
Phvul.011G134100 Phaseolus vulgaris HOM05D000069 ORTHO05D000060 5.5e-06 53.9 72 38.9
Prupe.3G122000 Prunus persica HOM05D000069 ORTHO05D000060 5.5e-06 53.9 70 41.4
RcHm_v2.0_Chr2g0143081 Rosa chinensis HOM05D000069 ORTHO05D000060 5.5e-06 53.9 70 44.3
TPR.G16040 Trifolium pratense HOM05D000069 ORTHO05D000060 5.5e-06 53.9 70 41.4
CSS0042057 Camellia sinensis var. sinensis HOM05D000069 ORTHO05D000060 7.2e-06 53.5 72 41.7
Duzib147G0428 Durio zibethinus HOM05D000069 ORTHO05D000060 7.2e-06 53.5 70 44.3
Duzib264G0797 Durio zibethinus HOM05D000069 ORTHO05D000060 7.2e-06 53.5 70 42.9
Glyma.12G123600 Glycine max HOM05D000069 ORTHO05D000060 7.2e-06 53.5 72 38.9
Glyma.12G127200 Glycine max HOM05D000069 ORTHO05D000060 7.2e-06 53.5 72 38.9
Glyma.U044800 Glycine max HOM05D000069 ORTHO05D000060 7.2e-06 53.5 72 38.9
Glyma.U045200 Glycine max HOM05D000069 ORTHO05D000060 7.2e-06 53.5 72 38.9
Hma1.2p1_0178F.1_g078900 Hydrangea macrophylla HOM05D000069 ORTHO05D000060 7.2e-06 53.5 70 42.9
Lj3g0000487 Lotus japonicus HOM05D000069 ORTHO05D000060 7.2e-06 53.5 71 38.0
Lj3g0018074 Lotus japonicus HOM05D000069 ORTHO05D000060 7.2e-06 53.5 71 38.0
Lj3g0025340 Lotus japonicus HOM05D000069 ORTHO05D000060 7.2e-06 53.5 71 38.0
Lj3g0027922 Lotus japonicus HOM05D000069 ORTHO05D000060 7.2e-06 53.5 72 41.7
MD17G1232200 Malus domestica HOM05D000069 ORTHO05D000060 7.2e-06 53.5 70 41.4
Medtr4g107930 Medicago truncatula HOM05D000069 ORTHO05D000060 7.2e-06 53.5 72 43.1
Prupe.3G120600 Prunus persica HOM05D000069 ORTHO05D000060 7.2e-06 53.5 70 40.0
Sopen03g002210 Solanum pennellii HOM05D000069 ORTHO05D000060 7.2e-06 53.5 69 36.2
GSVIVG01020698001 Vitis vinifera HOM05D000069 ORTHO05D000060 7.2e-06 53.5 68 41.2
Aqoxy4G01179 Aquilegia oxysepala HOM05D000069 ORTHO05D000060 9.5e-06 53.1 70 41.4
CSS0024536 Camellia sinensis var. sinensis HOM05D000069 ORTHO05D000060 9.5e-06 53.1 68 41.2
CSS0030258 Camellia sinensis var. sinensis HOM05D000069 ORTHO05D000060 9.5e-06 53.1 68 41.2
CSS0049979 Camellia sinensis var. sinensis HOM05D000069 ORTHO05D000060 9.5e-06 53.1 72 37.5
CiPaw.09G068800 Carya illinoinensis HOM05D000069 ORTHO05D000060 9.5e-06 53.1 73 41.1
Ca_03842_v3 Cicer arietinum L. HOM05D000069 ORTHO05D000060 9.5e-06 53.1 74 41.9
Migut.K01169 Erythranthe guttata HOM05D000069 ORTHO05D000060 9.5e-06 53.1 73 39.7
FAN02G0618 Fragaria x ananassa HOM05D000069 ORTHO05D000060 9.5e-06 53.1 70 42.9
FAN05G0368 Fragaria x ananassa HOM05D000069 ORTHO05D000060 9.5e-06 53.1 70 42.9
FAN09G0439 Fragaria x ananassa HOM05D000069 ORTHO05D000060 9.5e-06 53.1 70 42.9
FAN14G0228 Fragaria x ananassa HOM05D000069 ORTHO05D000060 9.5e-06 53.1 70 42.9
HanXRQChr04g0115981 Helianthus annuus HOM05D000069 ORTHO05D000060 9.5e-06 53.1 72 40.3
Hma1.2p1_0155F.1_g068200 Hydrangea macrophylla HOM05D000069 ORTHO05D000060 9.5e-06 53.1 73 42.5
Lj3g0021129 Lotus japonicus HOM05D000069 ORTHO05D000060 9.5e-06 53.1 70 40.0
Lalb_Chr01g0023851 Lupinus albus HOM05D000069 ORTHO05D000060 9.5e-06 53.1 72 38.9
MD09G1238200 Malus domestica HOM05D000069 ORTHO05D000060 9.5e-06 53.1 70 40.0
MD17G1231800 Malus domestica HOM05D000069 ORTHO05D000060 9.5e-06 53.1 70 40.0
Oeu008145.1 Olea europaea HOM05D000069 ORTHO05D000060 9.5e-06 53.1 74 43.2
Prupe.3G121900 Prunus persica HOM05D000069 ORTHO05D000060 9.5e-06 53.1 70 38.6
RcHm_v2.0_Chr5g0010401 Rosa chinensis HOM05D000069 ORTHO05D000060 9.5e-06 53.1 70 38.6
SEGI_11398 Sequoiadendron giganteum HOM05D000069 ORTHO05D000060 9.5e-06 53.1 65 38.5
Solyc03g006200.3 Solanum lycopersicum HOM05D000069 ORTHO05D000060 9.5e-06 53.1 69 36.2
TPR.G32307 Trifolium pratense HOM05D000069 ORTHO05D000060 9.5e-06 53.1 67 44.8


User provided reference genes

Program Settings