Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G19311 Trifolium pratense HOM05D007735 ORTHO05D009638 6.8e-72 273.9 136 100.0
Medtr8g072610 Medicago truncatula HOM05D007735 ORTHO05D009638 2.0e-55 219.2 122 89.3
Psat4g107200 Pisum sativum HOM05D007735 ORTHO05D009638 2.5e-50 202.2 136 78.7
Glyma.16G114400 Glycine max HOM05D007735 ORTHO05D009638 4.3e-42 174.9 148 68.9
Glyma.09G195900 Glycine max HOM05D007735 ORTHO05D009638 6.2e-41 171.0 143 68.5
VMungo1215G0699 Vigna mungo HOM05D007735 ORTHO05D009638 6.9e-40 167.5 147 66.7
Phvul.002G119100 Phaseolus vulgaris HOM05D007735 ORTHO05D009638 9.9e-39 163.7 146 65.8
Glyma.01G156500 Glycine max HOM05D007735 ORTHO05D009638 2.2e-38 162.5 146 65.8
Glyma.11G088300 Glycine max HOM05D007735 ORTHO05D009638 2.2e-38 162.5 147 66.7
LjContig00247g0020335 Lotus japonicus HOM05D007735 ORTHO05D009638 1.9e-37 159.5 147 63.9
Phvul.003G272000 Phaseolus vulgaris HOM05D007735 ORTHO05D009638 6.0e-36 154.5 137 63.5
VMungo0251G0553 Vigna mungo HOM05D007735 ORTHO05D009638 3.9e-35 151.8 134 66.4
Ca_25020_v3 Cicer arietinum L. HOM05D007735 ORTHO05D009638 3.3e-34 148.7 148 60.8
TPR.G33757 Trifolium pratense HOM05D001957 ORTHO05D002015 5.6e-34 147.9 152 60.5
Lalb_Chr09g0324871 Lupinus albus HOM05D007735 ORTHO05D009638 2.1e-33 146.0 140 59.3
Medtr5g024910 Medicago truncatula HOM05D007735 ORTHO05D009638 2.8e-33 145.6 150 57.3
Lalb_Chr16g0380221 Lupinus albus HOM05D007735 ORTHO05D009638 1.4e-32 143.3 142 58.5
Lalb_Chr05g0214991 Lupinus albus HOM05D007735 ORTHO05D009638 9.0e-32 140.6 133 61.7
Lalb_Chr05g0229481 Lupinus albus HOM05D007735 ORTHO05D009638 2.6e-31 139.0 121 65.3
Psat2g147360 Pisum sativum HOM05D007735 ORTHO05D009638 1.4e-29 133.3 152 54.6
Lj2g0017807 Lotus japonicus HOM05D007735 ORTHO05D009638 9.7e-26 120.6 143 53.8
arahy.Tifrunner.gnm1.ann1.Q37N58 Arachis hypogaea HOM05D007735 ORTHO05D009638 1.7e-22 109.8 126 57.9
arahy.Tifrunner.gnm1.ann1.S9U9HD Arachis hypogaea HOM05D007735 ORTHO05D009638 1.7e-22 109.8 126 57.9
TAR381G1223 Trochodendron aralioides HOM05D007735 ORTHO05D009638 1.8e-19 99.8 123 49.6
Thecc.01G001800 Theobroma cacao HOM05D007735 ORTHO05D009638 2.5e-18 95.9 131 46.6
Cfa007115 Carpinus fangiana HOM05D007735 ORTHO05D009638 3.3e-18 95.5 132 48.5
Prupe.7G187700 Prunus persica HOM05D007735 ORTHO05D009638 3.3e-18 95.5 142 46.5
Nn5g31061 Nelumbo nucifera HOM05D007735 ORTHO05D009638 4.3e-18 95.1 122 51.6
CSS0016261 Camellia sinensis var. sinensis HOM05D007735 ORTHO05D009638 5.7e-18 94.7 121 45.5
RcHm_v2.0_Chr2g0096741 Rosa chinensis HOM05D007735 ORTHO05D009638 7.4e-18 94.4 119 52.1
Nitab4.5_0000855g0160 Nicotiana tabacum HOM05D007735 ORTHO05D009638 1.3e-17 93.6 134 47.0
Cc07_g12240 Coffea canephora HOM05D007735 ORTHO05D009638 3.7e-17 92.0 144 40.3
Potri.001G456700 Populus trichocarpa HOM05D007735 ORTHO05D009638 3.7e-17 92.0 108 52.8
Manes.01G157700 Manihot esculenta HOM05D007735 ORTHO05D009638 2.4e-16 89.4 125 44.8
Nitab4.5_0004448g0030 Nicotiana tabacum HOM05D007735 ORTHO05D009638 4.1e-16 88.6 136 45.6
QL06p053348 Quercus lobata HOM05D007735 ORTHO05D009638 4.1e-16 88.6 128 46.1
FAN23G3070 Fragaria x ananassa HOM05D007735 ORTHO05D009638 5.3e-16 88.2 121 48.8
ECA246G0225 Erigeron canadensis HOM05D007735 ORTHO05D009638 9.1e-16 87.4 124 41.1
Solyc02g082240.1 Solanum lycopersicum HOM05D007735 ORTHO05D009638 9.1e-16 87.4 148 41.2
Peaxi162Scf00918g00052 Petunia axillaris HOM05D007735 ORTHO05D009638 1.5e-15 86.7 131 45.0
Potri.011G145200 Populus trichocarpa HOM05D007735 ORTHO05D009638 1.5e-15 86.7 131 45.8
CSS0025501 Camellia sinensis var. sinensis HOM05D007735 ORTHO05D009638 2.6e-15 85.9 126 45.2
FvH4_1g09950 Fragaria vesca HOM05D007735 ORTHO05D009638 2.6e-15 85.9 120 48.3
FAN19G1654 Fragaria x ananassa HOM05D007735 ORTHO05D009638 2.6e-15 85.9 120 48.3
Lsat_1_v5_gn_3_69161 Lactuca sativa HOM05D007735 ORTHO05D009638 3.4e-15 85.5 124 45.2
Sopen02g026900 Solanum pennellii HOM05D007735 ORTHO05D009638 4.5e-15 85.1 147 40.8
FAN28G1635 Fragaria x ananassa HOM05D007735 ORTHO05D009638 7.7e-15 84.3 126 47.6
PGSC0003DMG400013637 Solanum tuberosum HOM05D007735 ORTHO05D009638 7.7e-15 84.3 147 38.8
FAN26G0974 Fragaria x ananassa HOM05D007735 ORTHO05D009638 1.0e-14 84.0 116 48.3
Sabra16G0309000 Salix brachista HOM05D007735 ORTHO05D009638 1.7e-14 83.2 131 45.0
Eucgr.J02566 Eucalyptus grandis HOM05D007735 ORTHO05D009638 2.2e-14 82.8 152 42.1
FAN23G2983 Fragaria x ananassa HOM05D007735 ORTHO05D009638 2.2e-14 82.8 116 49.1
Manes.02G117000 Manihot esculenta HOM05D007735 ORTHO05D009638 3.8e-14 82.0 126 44.4
Aqoxy6G03024 Aquilegia oxysepala HOM05D007735 ORTHO05D009638 5.0e-14 81.6 129 44.2
Sabra11G0130300 Salix brachista HOM05D007735 ORTHO05D009638 1.1e-13 80.5 125 44.0
arahy.Tifrunner.gnm1.ann1.KD7YUX Arachis hypogaea HOM05D007735 ORTHO05D009638 2.5e-13 79.3 136 47.8
Sc03g0004120 Simmondsia chinensis HOM05D007735 ORTHO05D009638 9.4e-13 77.4 122 44.3
SGA_v2.0_scaffold108G30951 Striga asiatica HOM05D007735 ORTHO05D009638 6.1e-12 74.7 130 39.2
Gorai.012G025100 Gossypium raimondii HOM05D007735 ORTHO05D009638 7.9e-12 74.3 129 43.4
Nitab4.5_0006309g0010 Nicotiana tabacum HOM05D007735 ORTHO05D009638 7.9e-12 74.3 111 43.2
Gohir.A05G393900 Gossypium hirsutum HOM05D007735 ORTHO05D009638 1.8e-11 73.2 125 41.6
Eucgr.I02199 Eucalyptus grandis HOM05D007735 ORTHO05D009638 2.3e-11 72.8 130 38.5
Nn6g31607 Nelumbo nucifera HOM05D007735 ORTHO05D009638 2.3e-11 72.8 140 40.7
Oeu045753.2 Olea europaea HOM05D007735 ORTHO05D009638 3.0e-11 72.4 119 42.0
Gohir.D04G020900 Gossypium hirsutum HOM05D007735 ORTHO05D009638 3.9e-11 72.0 125 41.6
Lsat_1_v5_gn_2_74220 Lactuca sativa HOM05D007735 ORTHO05D009638 5.1e-11 71.6 121 45.5
PGSC0003DMG400015147 Solanum tuberosum HOM05D007735 ORTHO05D009638 8.8e-11 70.9 110 40.9
Lsat_1_v5_gn_8_114121 Lactuca sativa HOM05D007735 ORTHO05D009638 1.5e-10 70.1 125 43.2
CiPaw.07G132500 Carya illinoinensis HOM05D007735 ORTHO05D009638 3.3e-10 68.9 122 36.1
SGA_v2.0_scaffold2G00933 Striga asiatica HOM05D007735 ORTHO05D009638 5.7e-10 68.2 118 42.4
Lsat_1_v5_gn_8_114101 Lactuca sativa HOM05D007735 ORTHO05D009638 7.4e-10 67.8 125 43.2
PGSC0003DMG400018690 Solanum tuberosum HOM05D007735 ORTHO05D009638 7.4e-10 67.8 124 38.7
DCAR_014121 Daucus carota HOM05D007735 ORTHO05D009638 9.7e-10 67.4 122 41.0
DCAR_014122 Daucus carota HOM05D007735 ORTHO05D009638 9.7e-10 67.4 122 41.0
Haze_22869 Corylus avellana HOM05D007735 ORTHO05D009638 2.2e-09 66.2 128 39.1
Oeu043409.2 Olea europaea HOM05D007735 ORTHO05D009638 1.4e-08 63.5 105 39.0
COL.COLO4_22568 Corchorus olitorius HOM05D007735 ORTHO05D009638 1.8e-08 63.2 125 42.4
CsaV3_3G000130 Cucumis sativus L. HOM05D007735 ORTHO05D009638 3.4e-07 58.9 118 39.0
CsaV3_UNG155170 Cucumis sativus L. HOM05D007735 ORTHO05D009638 3.4e-07 58.9 118 39.0
Cpa.g.sc6.350 Carica papaya HOM05D007735 ORTHO05D009638 5.9e-07 58.2 107 40.2
Nitab4.5_0000235g0170 Nicotiana tabacum HOM05D007735 ORTHO05D009638 7.7e-07 57.8 90 38.9
Sed0019252 Sechium edule HOM05D007735 ORTHO05D009638 1.7e-06 56.6 123 35.0
ATR0605G038 Amborella trichopoda HOM05D007735 ORTHO05D009638 5.0e-06 55.1 108 39.8
Nitab4.5_0004507g0030 Nicotiana tabacum HOM05D007735 ORTHO05D009638 5.0e-06 55.1 125 34.4
CiPaw.07G000500 Carya illinoinensis HOM05D007735 ORTHO05D009638 6.5e-06 54.7 118 39.0


User provided reference genes

Program Settings