Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G19239 Trifolium pratense HOM05D006477 ORTHO05D008311 1.7e-45 185.7 92 100.0
TPR.G24136 Trifolium pratense HOM05D006477 ORTHO05D008311 8.2e-45 183.3 92 97.8
Ca_18942_v3 Cicer arietinum L. HOM05D006477 ORTHO05D008311 7.9e-40 166.8 92 89.1
arahy.Tifrunner.gnm1.ann1.2E1B03 Arachis hypogaea HOM05D006477 ORTHO05D008311 5.2e-39 164.1 92 85.9
arahy.Tifrunner.gnm1.ann1.B2599V Arachis hypogaea HOM05D006477 ORTHO05D008311 5.2e-39 164.1 92 85.9
Lj1g0022259 Lotus japonicus HOM05D006477 ORTHO05D008311 3.3e-38 161.4 92 83.7
Phvul.010G094300 Phaseolus vulgaris HOM05D006477 ORTHO05D008311 5.3e-36 154.1 89 82.0
Lalb_Chr25g0285311 Lupinus albus HOM05D006477 ORTHO05D008311 7.0e-36 153.7 90 80.0
Medtr4g078485 Medicago truncatula HOM05D006477 ORTHO05D008311 3.5e-35 151.4 82 90.2
Glyma.12G115400 Glycine max HOM05D006477 ORTHO05D008311 7.7e-35 150.2 89 82.0
Phvul.011G119800 Phaseolus vulgaris HOM05D006477 ORTHO05D008311 1.3e-34 149.4 87 80.5
Glyma.06G291500 Glycine max HOM05D006477 ORTHO05D008311 8.5e-34 146.7 89 79.8
MBI04_g32195_MAGBIO Magnolia biondii HOM05D006477 ORTHO05D008311 2.1e-32 142.1 86 79.1
AUR62007820 Chenopodium quinoa HOM05D006477 ORTHO05D008311 4.7e-32 141.0 90 75.6
Nitab4.5_0004594g0090 Nicotiana tabacum HOM05D006477 ORTHO05D008311 1.0e-31 139.8 90 75.6
Cc02_g26330 Coffea canephora HOM05D006477 ORTHO05D008311 1.4e-31 139.4 90 74.4
Cfa003675 Carpinus fangiana HOM05D006477 ORTHO05D008311 5.2e-31 137.5 86 76.7
MELO3C020371.2 Cucumis melo HOM05D006477 ORTHO05D008311 5.2e-31 137.5 86 74.4
QL05p054895 Quercus lobata HOM05D006477 ORTHO05D008311 8.8e-31 136.7 86 75.6
QL05p056339 Quercus lobata HOM05D006477 ORTHO05D008311 8.8e-31 136.7 86 75.6
ClCG06G008130 Citrullus lanatus HOM05D006477 ORTHO05D008311 1.2e-30 136.3 86 73.3
Haze_15813 Corylus avellana HOM05D006477 ORTHO05D008311 1.2e-30 136.3 86 75.6
Actinidia31748 Actinidia chinensis HOM05D006477 ORTHO05D008311 2.6e-30 135.2 86 75.6
CAN.G700.29 Capsicum annuum HOM05D006477 ORTHO05D008311 3.3e-30 134.8 86 73.3
TWI59G0878 Tripterygium wilfordii HOM05D006477 ORTHO05D008311 4.4e-30 134.4 86 73.3
Actinidia05816 Actinidia chinensis HOM05D006477 ORTHO05D008311 5.7e-30 134.0 86 74.4
EL10Ac6g14607 Beta vulgaris HOM05D006477 ORTHO05D008311 5.7e-30 134.0 86 73.3
PGR042G2475 Punica granatum HOM05D006477 ORTHO05D008311 5.7e-30 134.0 86 72.1
MBI04_g32196_MAGBIO Magnolia biondii HOM05D006477 ORTHO05D008311 7.5e-30 133.7 86 72.1
Rhsim07G0044200 Rhododendron simsii HOM05D006477 ORTHO05D008311 7.5e-30 133.7 86 73.3
Aqoxy7G00962 Aquilegia oxysepala HOM05D006477 ORTHO05D008311 9.7e-30 133.3 90 73.3
Manes.06G016700 Manihot esculenta HOM05D006477 ORTHO05D008311 9.7e-30 133.3 86 73.3
Manes.06G016750 Manihot esculenta HOM05D006477 ORTHO05D008311 9.7e-30 133.3 86 73.3
Duzib128G0861 Durio zibethinus HOM05D006477 ORTHO05D008311 1.3e-29 132.9 86 73.3
Nitab4.5_0004800g0020 Nicotiana tabacum HOM05D006477 ORTHO05D008311 1.3e-29 132.9 90 74.4
Rhsim07G0044700 Rhododendron simsii HOM05D006477 ORTHO05D008311 1.3e-29 132.9 86 72.1
CiPaw.03G039600 Carya illinoinensis HOM05D006477 ORTHO05D008311 1.7e-29 132.5 86 73.3
HPP92_026480 Vanilla planifolia HOM05D006477 ORTHO05D008311 1.7e-29 132.5 86 72.1
CSS0043287 Camellia sinensis var. sinensis HOM05D006477 ORTHO05D008311 2.2e-29 132.1 86 70.9
FvH4_7g07070 Fragaria vesca HOM05D006477 ORTHO05D008311 2.2e-29 132.1 84 72.6
FAN06G1803 Fragaria x ananassa HOM05D006477 ORTHO05D008311 2.2e-29 132.1 84 72.6
Gohir.A12G270700 Gossypium hirsutum HOM05D006477 ORTHO05D008311 2.2e-29 132.1 90 71.1
Gohir.D12G271100 Gossypium hirsutum HOM05D006477 ORTHO05D008311 2.2e-29 132.1 90 71.1
Gorai.008G291500 Gossypium raimondii HOM05D006477 ORTHO05D008311 2.2e-29 132.1 90 71.1
Hma1.2p1_2755F.1_g327960 Hydrangea macrophylla HOM05D006477 ORTHO05D008311 2.2e-29 132.1 86 72.1
MD07G1076600 Malus domestica HOM05D006477 ORTHO05D008311 2.2e-29 132.1 86 72.1
Potri.005G094100 Populus trichocarpa HOM05D006477 ORTHO05D008311 2.2e-29 132.1 86 72.1
SalBow6G6803 Salvia bowleyana HOM05D006477 ORTHO05D008311 2.2e-29 132.1 86 73.3
Aqoxy6G02884 Aquilegia oxysepala HOM05D006477 ORTHO05D008311 2.8e-29 131.7 90 71.1
CSS0025225 Camellia sinensis var. sinensis HOM05D006477 ORTHO05D008311 2.8e-29 131.7 86 70.9
Hma1.2p1_0915F.1_g236330 Hydrangea macrophylla HOM05D006477 ORTHO05D008311 2.8e-29 131.7 86 73.3
QL05p056259 Quercus lobata HOM05D006477 ORTHO05D008311 2.8e-29 131.7 87 74.7
COL.COLO4_15215 Corchorus olitorius HOM05D006477 ORTHO05D008311 3.7e-29 131.3 90 72.2
Eucgr.E04248 Eucalyptus grandis HOM05D006477 ORTHO05D008311 3.7e-29 131.3 86 70.9
FAN03G3069 Fragaria x ananassa HOM05D006477 ORTHO05D029725 3.7e-29 131.3 84 71.4
FAN10G2338 Fragaria x ananassa HOM05D006477 ORTHO05D008311 3.7e-29 131.3 84 72.6
Prupe.2G097300 Prunus persica HOM05D006477 ORTHO05D008311 3.7e-29 131.3 86 73.3
GSVIVG01001179001 Vitis vinifera HOM05D006477 ORTHO05D008311 6.3e-29 130.6 86 72.1
PGSC0003DMG400001789 Solanum tuberosum HOM05D006477 ORTHO05D008311 8.2e-29 130.2 86 70.9
vmacro13578 Vaccinium macrocarpon HOM05D006477 ORTHO05D008311 1.1e-28 129.8 86 70.9
Solyc01g081120.2 Solanum lycopersicum HOM05D006477 ORTHO05D008311 1.4e-28 129.4 86 70.9
Sopen01g032730 Solanum pennellii HOM05D006477 ORTHO05D008311 1.4e-28 129.4 86 70.9
COL.COLO4_37808 Corchorus olitorius HOM05D006477 ORTHO05D008311 1.8e-28 129.0 90 71.1
HanXRQChr15g0495711 Helianthus annuus HOM05D006477 ORTHO05D008311 2.4e-28 128.6 86 68.6
HanXRQChr16g0522681 Helianthus annuus HOM05D006477 ORTHO05D008311 2.4e-28 128.6 86 68.6
Aqoxy7G00965 Aquilegia oxysepala HOM05D006477 ORTHO05D008311 3.1e-28 128.3 83 75.9
RcHm_v2.0_Chr1g0337021 Rosa chinensis HOM05D006477 ORTHO05D008311 3.1e-28 128.3 86 69.8
Thecc.07G155600 Theobroma cacao HOM05D006477 ORTHO05D008311 3.1e-28 128.3 86 70.9
ATR0829G122 Amborella trichopoda HOM05D006477 ORTHO05D008311 4.1e-28 127.9 86 70.9
Rhsim07G0124700 Rhododendron simsii HOM05D006477 ORTHO05D008311 4.1e-28 127.9 86 69.8
MD02G1240300 Malus domestica HOM05D006477 ORTHO05D008311 1.2e-27 126.3 86 68.6
Migut.J00830 Erythranthe guttata HOM05D006477 ORTHO05D008311 1.6e-27 125.9 86 65.1
Aqoxy5G03392 Aquilegia oxysepala HOM05D006477 ORTHO05D008311 3.5e-27 124.8 83 74.7
ECA234G3546 Erigeron canadensis HOM05D006477 ORTHO05D008311 3.5e-27 124.8 86 65.1
QL03p061357 Quercus lobata HOM05D006477 ORTHO05D008311 4.5e-27 124.4 86 69.8
Sabra05G0077900 Salix brachista HOM05D006477 ORTHO05D008311 1.3e-26 122.9 82 72.0
Lsat_1_v5_gn_4_40501 Lactuca sativa HOM05D006477 ORTHO05D008311 1.7e-26 122.5 86 64.0
SGA_v2.0_scaffold120G32938 Striga asiatica HOM05D006477 ORTHO05D008311 1.7e-26 122.5 86 64.0
ECA234G1029 Erigeron canadensis HOM05D006477 ORTHO05D008311 6.5e-26 120.6 86 62.8
Cpa.g.sc53.139 Carica papaya HOM05D006477 ORTHO05D008311 8.5e-26 120.2 83 69.9
HanXRQChr17g0567251 Helianthus annuus HOM05D006477 ORTHO05D008311 8.5e-26 120.2 83 66.3
CsaV3_2G011040 Cucumis sativus L. HOM05D006477 ORTHO05D008311 1.9e-25 119.0 74 75.7
SEGI_06535 Sequoiadendron giganteum HOM05D006477 ORTHO05D008311 5.5e-25 117.5 90 61.1
SHI34920 Sapria himalayana HOM05D006477 ORTHO05D008311 9.4e-25 116.7 79 69.6
unitig_27.g24761 Utricularia gibba HOM05D006477 ORTHO05D008311 1.2e-24 116.3 91 63.7
Ciclev10023972m.g Citrus clementina HOM05D006477 ORTHO05D008311 6.1e-24 114.0 88 64.8
THA.LOC104823802 Tarenaya hassleriana HOM05D006477 ORTHO05D008311 1.4e-23 112.8 84 63.1
Zm00001eb326860 Zea mays HOM05D006477 ORTHO05D008311 3.0e-23 111.7 83 63.9
AL2G19670 Arabidopsis lyrata HOM05D006477 ORTHO05D008311 1.5e-22 109.4 84 59.5
Zm00001eb251360 Zea mays HOM05D006477 ORTHO05D008311 2.6e-22 108.6 83 60.2
AT1G65032 Arabidopsis thaliana HOM05D006477 ORTHO05D008311 4.4e-22 107.8 84 58.3
Carub.0002s1025 Capsella rubella HOM05D006477 ORTHO05D008311 5.7e-22 107.5 84 58.3
Os02g0695700 Oryza sativa ssp. japonica HOM05D006477 ORTHO05D008311 9.8e-22 106.7 83 60.2
Sp5g22520 Schrenkiella parvula HOM05D006477 ORTHO05D008311 1.7e-21 105.9 82 58.5
Thhalv10019379m.g Eutrema salsugineum HOM05D006477 ORTHO05D008311 2.2e-21 105.5 82 58.5
BcaNung05073 Brassica carinata HOM05D006477 ORTHO05D008311 2.8e-21 105.1 82 57.3
PSO017G7014 Papaver somniferum HOM05D006477 ORTHO05D008311 2.8e-21 105.1 71 67.6
Atru.chr3.3240 Acer truncatum HOM05D006477 ORTHO05D008311 3.7e-21 104.8 88 60.2
A07p34050 Brassica napus HOM05D006477 ORTHO05D008311 4.8e-21 104.4 82 56.1
C06p42740 Brassica napus HOM05D006477 ORTHO05D008311 4.8e-21 104.4 82 56.1
C06p42790 Brassica napus HOM05D006477 ORTHO05D008311 4.8e-21 104.4 82 56.1
BolC6t39165H Brassica oleracea HOM05D006477 ORTHO05D008311 4.8e-21 104.4 82 56.1
BraA07t31031Z Brassica rapa HOM05D006477 ORTHO05D008311 1.8e-20 102.4 82 54.9
Pp3c3_2840 Physcomitrium patens HOM05D006477 ORTHO05D008311 2.4e-20 102.1 86 58.1
C06p41870 Brassica napus HOM05D006477 ORTHO05D008311 3.1e-20 101.7 82 54.9
BolC6t39243H Brassica oleracea HOM05D006477 ORTHO05D008311 3.1e-20 101.7 82 54.9
Os04g0624900 Oryza sativa ssp. japonica HOM05D006477 ORTHO05D008311 7.7e-19 97.1 79 59.5
arahy.Tifrunner.gnm1.ann1.HM6XW1 Arachis hypogaea HOM05D006477 ORTHO05D008311 3.8e-18 94.7 89 56.2
Peaxi162Scf00592g00428 Petunia axillaris HOM05D000001 ORTHO05D000003 6.5e-18 94.0 65 69.2
Mapoly0009s0212 Marchantia polymorpha HOM05D006477 ORTHO05D008311 1.9e-17 92.4 86 50.0
CSS0008051 Camellia sinensis var. sinensis HOM05D006477 ORTHO05D008311 7.2e-17 90.5 86 53.5
DCAR_024347 Daucus carota HOM05D006477 ORTHO05D008311 2.8e-16 88.6 60 68.3
Sed0027346 Sechium edule HOM05D006477 ORTHO05D008311 4.7e-16 87.8 61 68.9
Thhalv10019610m.g Eutrema salsugineum HOM05D006477 ORTHO05D008311 4.0e-15 84.7 68 57.4
Psat0s466g0120 Pisum sativum HOM05D006477 ORTHO05D008311 9.8e-14 80.1 50 76.0
BcaC08g46243 Brassica carinata HOM05D006477 ORTHO05D008311 1.3e-13 79.7 82 46.3
MBI16_g31701_MAGBIO Magnolia biondii HOM05D006477 ORTHO05D008311 1.7e-13 79.3 60 68.3
Psat7g168960 Pisum sativum HOM05D006477 ORTHO05D008311 1.7e-13 79.3 50 76.0
BcaB03g15190 Brassica carinata HOM05D006477 ORTHO05D008311 1.4e-12 76.3 83 48.2
Sc21g0001600 Simmondsia chinensis HOM05D006477 ORTHO05D008311 4.1e-12 74.7 48 72.9
SGA_v2.0_scaffold195G40833 Striga asiatica HOM05D006477 ORTHO05D404429 4.3e-09 64.7 60 51.7
PSO017G6472 Papaver somniferum HOM05D006477 ORTHO05D008311 1.6e-08 62.8 49 61.2
PSO017G6604 Papaver somniferum HOM05D006477 ORTHO05D008311 1.6e-08 62.8 49 61.2
Rhsim13G0110700 Rhododendron simsii HOM05D006477 ORTHO05D008311 3.6e-08 61.6 45 60.0


User provided reference genes

Program Settings