Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G19235 Trifolium pratense HOM05D004543 ORTHO05D006042 0.0e+00 1168.7 657 100.0
Ca_00911_v3 Cicer arietinum L. HOM05D004543 ORTHO05D006042 0.0e+00 1079.7 649 87.2
Psat0s3466g0040 Pisum sativum HOM05D004543 ORTHO05D006042 0.0e+00 1079.3 649 86.9
Medtr4g103610 Medicago truncatula HOM05D004543 ORTHO05D006042 2.0e-310 1068.5 649 86.3
Lj4g0012876 Lotus japonicus HOM05D004543 ORTHO05D006042 2.4e-295 1018.5 649 82.7
Lalb_Chr07g0183361 Lupinus albus HOM05D004543 ORTHO05D006042 1.2e-294 1016.1 649 82.3
Glyma.17G129100 Glycine max HOM05D004543 ORTHO05D006042 3.4e-294 1014.6 649 82.6
VMungo1215G3183 Vigna mungo HOM05D004543 ORTHO05D006042 1.3e-293 1012.7 649 82.3
Phvul.003G210200 Phaseolus vulgaris HOM05D004543 ORTHO05D006042 3.2e-292 1008.1 649 81.2
arahy.Tifrunner.gnm1.ann1.28ZGNX Arachis hypogaea HOM05D004543 ORTHO05D006042 3.3e-289 998.0 649 81.2
Glyma.05G047300 Glycine max HOM05D004543 ORTHO05D006042 4.3e-289 997.7 649 81.0
arahy.Tifrunner.gnm1.ann1.9QW7J0 Arachis hypogaea HOM05D004543 ORTHO05D006042 4.8e-288 994.2 649 81.0
CiPaw.11G008900 Carya illinoinensis HOM05D004543 ORTHO05D006042 7.2e-260 900.6 651 72.7
Haze_07231 Corylus avellana HOM05D004543 ORTHO05D006042 1.4e-258 896.3 651 71.9
Cfa018837 Carpinus fangiana HOM05D004543 ORTHO05D006042 3.9e-258 894.8 651 72.2
Manes.06G118300 Manihot esculenta HOM05D004543 ORTHO05D006042 8.8e-258 893.6 640 71.6
QL10p004063 Quercus lobata HOM05D004543 ORTHO05D006042 9.7e-257 890.2 651 70.8
MD06G1143400 Malus domestica HOM05D004543 ORTHO05D006042 1.4e-255 886.3 647 71.7
MD14G1158600 Malus domestica HOM05D004543 ORTHO05D006042 7.0e-255 884.0 647 71.3
Sabra15G0115500 Salix brachista HOM05D004543 ORTHO05D006042 2.0e-254 882.5 646 71.7
Prupe.5G152600 Prunus persica HOM05D004543 ORTHO05D006042 2.6e-254 882.1 649 71.0
Potri.015G094000 Populus trichocarpa HOM05D004543 ORTHO05D006042 3.2e-252 875.2 640 71.4
CANSAT80G2145 Cannabis sativa HOM05D004543 ORTHO05D006042 7.2e-252 874.0 650 70.2
Ciclev10018979m.g Citrus clementina HOM05D004543 ORTHO05D006042 1.6e-251 872.8 651 69.7
Potri.012G096100 Populus trichocarpa HOM05D004543 ORTHO05D006042 2.1e-251 872.5 640 70.9
Atru.chr9.1076 Acer truncatum HOM05D004543 ORTHO05D006042 3.0e-250 868.6 646 69.8
FvH4_5g08050 Fragaria vesca HOM05D004543 ORTHO05D006042 8.8e-250 867.1 667 68.8
FAN18G3295 Fragaria x ananassa HOM05D004543 ORTHO05D006042 8.8e-250 867.1 667 68.8
RcHm_v2.0_Chr7g0190411 Rosa chinensis HOM05D004543 ORTHO05D006042 8.8e-250 867.1 650 69.8
FAN13G0766 Fragaria x ananassa HOM05D004543 ORTHO05D006042 2.8e-248 862.1 639 70.4
FAN04G2916 Fragaria x ananassa HOM05D004543 ORTHO05D006042 8.2e-248 860.5 655 69.5
GSVIVG01008523001 Vitis vinifera HOM05D004543 ORTHO05D006042 5.5e-244 847.8 649 68.6
PGR083G0162 Punica granatum HOM05D004543 ORTHO05D006042 3.0e-242 842.0 649 67.5
COL.COLO4_26675 Corchorus olitorius HOM05D004543 ORTHO05D006042 5.2e-242 841.3 652 68.4
Eucgr.B00121 Eucalyptus grandis HOM05D004543 ORTHO05D006042 7.5e-241 837.4 642 69.9
Thecc.06G039500 Theobroma cacao HOM05D004543 ORTHO05D006042 1.7e-240 836.3 651 68.4
Dinv11159 Davidia involucrata HOM05D004543 ORTHO05D006042 2.2e-240 835.9 644 68.0
Duzib138G1537 Durio zibethinus HOM05D004543 ORTHO05D006042 2.0e-238 829.3 652 67.8
Hma1.2p1_1271F.1_g271760 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 3.5e-238 828.6 640 66.7
Actinidia25587 Actinidia chinensis HOM05D004543 ORTHO05D006042 1.7e-237 826.2 640 66.2
TAR622G0482 Trochodendron aralioides HOM05D004543 ORTHO05D006042 2.9e-237 825.5 649 66.9
TWI23G0493 Tripterygium wilfordii HOM05D004543 ORTHO05D006042 5.0e-237 824.7 650 66.6
CSS0037462 Camellia sinensis var. sinensis HOM05D004543 ORTHO05D006042 1.5e-236 823.2 644 66.5
CsaV3_6G002430 Cucumis sativus L. HOM05D004543 ORTHO05D006042 2.8e-235 818.9 649 67.2
Gohir.D11G175000 Gossypium hirsutum HOM05D004543 ORTHO05D006042 3.6e-235 818.5 651 66.8
ClCG11G005570 Citrullus lanatus HOM05D004543 ORTHO05D006042 1.0e-234 817.0 651 67.1
Gorai.007G187600 Gossypium raimondii HOM05D004543 ORTHO05D006042 1.4e-234 816.6 651 66.5
vmacro19212 Vaccinium macrocarpon HOM05D004543 ORTHO05D006042 1.4e-234 816.6 646 65.2
Gohir.A11G168800 Gossypium hirsutum HOM05D004543 ORTHO05D006042 3.0e-234 815.5 651 66.7
Lj9C477T19 Lonicera japonica HOM05D004543 ORTHO05D006042 2.8e-232 808.9 666 64.6
Sed0026192 Sechium edule HOM05D004543 ORTHO05D006042 3.7e-232 808.5 649 67.2
Actinidia15838 Actinidia chinensis HOM05D004543 ORTHO05D006042 4.9e-232 808.1 649 64.7
Hund02429 Selenicereus undatus HOM05D004543 ORTHO05D006042 1.1e-231 807.0 650 65.2
Sed0023388 Sechium edule HOM05D004543 ORTHO05D006042 2.7e-230 802.4 649 65.9
Nn3g16500 Nelumbo nucifera HOM05D004543 ORTHO05D006042 1.7e-229 799.7 639 66.2
MELO3C025044.2 Cucumis melo HOM05D004543 ORTHO05D006042 6.6e-229 797.7 651 65.7
Aqoxy5G03415 Aquilegia oxysepala HOM05D004543 ORTHO05D006042 8.6e-229 797.3 640 65.2
Cpa.g.sc13.138 Carica papaya HOM05D004543 ORTHO05D006042 8.6e-229 797.3 646 66.7
AUR62029871 Chenopodium quinoa HOM05D004543 ORTHO05D006042 4.0e-226 788.5 641 64.7
Lsat_1_v5_gn_4_76761 Lactuca sativa HOM05D004543 ORTHO05D006042 1.5e-225 786.6 656 63.1
Migut.I00508 Erythranthe guttata HOM05D004543 ORTHO05D006042 2.0e-225 786.2 647 64.3
AL7G28340 Arabidopsis lyrata HOM05D004543 ORTHO05D006042 1.3e-224 783.5 640 64.8
PSO782G5417 Papaver somniferum HOM05D004543 ORTHO05D006042 1.7e-224 783.1 651 62.7
Oeu056011.1 Olea europaea HOM05D004543 ORTHO05D006042 2.9e-224 782.3 652 62.0
Carub.0007s1621 Capsella rubella HOM05D004543 ORTHO05D006042 6.4e-224 781.2 640 64.7
PSO063G5574 Papaver somniferum HOM05D004543 ORTHO05D006042 2.0e-222 776.2 651 62.1
THA.LOC104811593 Tarenaya hassleriana HOM05D004543 ORTHO05D006042 7.8e-222 774.2 648 63.1
SGA_v2.0_scaffold161G37784 Striga asiatica HOM05D004543 ORTHO05D006042 1.3e-221 773.5 647 62.0
AT4G24840 Arabidopsis thaliana HOM05D004543 ORTHO05D006042 1.7e-221 773.1 640 64.5
Cc07_g18860 Coffea canephora HOM05D004543 ORTHO05D006042 1.7e-221 773.1 640 62.8
Thhalv10024490m.g Eutrema salsugineum HOM05D004543 ORTHO05D006042 1.7e-221 773.1 640 63.1
EL10As4g23416 Beta vulgaris HOM05D004543 ORTHO05D006042 6.2e-219 764.6 651 62.8
HanXRQChr09g0273071 Helianthus annuus HOM05D004543 ORTHO05D006042 1.8e-218 763.1 645 61.6
BcaNung06004 Brassica carinata HOM05D004543 ORTHO05D006042 2.6e-217 759.2 640 63.0
Aa31LG7G11000 Aethionema arabicum HOM05D004543 ORTHO05D006042 2.9e-216 755.7 671 60.4
BcaC06g32853 Brassica carinata HOM05D004543 ORTHO05D006042 4.9e-216 755.0 640 62.8
BolC7t45874H Brassica oleracea HOM05D004543 ORTHO05D006042 4.9e-216 755.0 640 62.8
C01p20140 Brassica napus HOM05D004543 ORTHO05D006042 7.0e-215 751.1 640 62.5
BolC1t01943H Brassica oleracea HOM05D004543 ORTHO05D006042 7.0e-215 751.1 640 62.5
A01p16150 Brassica napus HOM05D004543 ORTHO05D006042 1.2e-214 750.4 640 62.7
BraA01t01551Z Brassica rapa HOM05D004543 ORTHO05D006042 1.2e-214 750.4 640 62.7
Sp7g22830 Schrenkiella parvula HOM05D004543 ORTHO05D006042 1.2e-214 750.4 640 62.0
AL3G15410 Arabidopsis lyrata HOM05D004543 ORTHO05D006042 1.6e-214 750.0 640 61.4
C07p53840 Brassica napus HOM05D004543 ORTHO05D006042 4.6e-214 748.4 640 62.3
Carub.0003s0428 Capsella rubella HOM05D004543 ORTHO05D006042 8.6e-213 744.2 640 60.8
FAN08G2446 Fragaria x ananassa HOM05D004543 ORTHO05D006042 8.6e-213 744.2 650 62.6
ECA232G1394 Erigeron canadensis HOM05D004543 ORTHO05D006042 7.3e-212 741.1 640 60.9
A03p55600 Brassica napus HOM05D004543 ORTHO05D006042 9.5e-212 740.7 645 61.9
BraA03t14627Z Brassica rapa HOM05D004543 ORTHO05D006042 9.5e-212 740.7 645 61.9
Nitab4.5_0002497g0060 Nicotiana tabacum HOM05D004543 ORTHO05D006042 1.8e-210 736.5 642 62.0
Sopen08g002610 Solanum pennellii HOM05D004543 ORTHO05D006042 2.3e-210 736.1 646 61.5
PGSC0003DMG400026304 Solanum tuberosum HOM05D004543 ORTHO05D006042 4.0e-210 735.3 641 61.5
Nitab4.5_0001187g0130 Nicotiana tabacum HOM05D004543 ORTHO05D006042 1.5e-209 733.4 642 61.5
unitig_8.g3033 Utricularia gibba HOM05D004543 ORTHO05D006042 1.4e-207 726.9 648 59.6
Migut.I00509 Erythranthe guttata HOM05D004543 ORTHO05D006042 7.8e-206 721.1 639 61.3
Sp6g25960 Schrenkiella parvula HOM05D004543 ORTHO05D006042 2.0e-201 706.4 641 59.1
ATR0561G088 Amborella trichopoda HOM05D004543 ORTHO05D006042 1.7e-200 703.4 665 56.5
Peaxi162Scf00045g00192 Petunia axillaris HOM05D004543 ORTHO05D006042 8.6e-197 691.0 651 58.5
CAN.G906.5 Capsicum annuum HOM05D004543 ORTHO05D006042 7.3e-196 688.0 644 58.5
Solyc08g006660.2 Solanum lycopersicum HOM05D004543 ORTHO05D006042 4.4e-193 678.7 582 62.5
BolC3t13508H Brassica oleracea HOM05D004543 ORTHO05D006042 3.9e-189 665.6 651 56.5
AUR62025843 Chenopodium quinoa HOM05D004543 ORTHO05D006042 3.3e-188 662.5 552 63.0
CDE05G1945 Ceratophyllum demersum HOM05D004543 ORTHO05D006042 2.8e-187 659.4 649 55.5
Os03g0849600 Oryza sativa ssp. japonica HOM05D004543 ORTHO05D006042 3.4e-185 652.5 641 54.1
Zm00001eb210790 Zea mays HOM05D004543 ORTHO05D006042 1.3e-184 650.6 642 55.3
BcaNung04937 Brassica carinata HOM05D004543 ORTHO05D006042 1.7e-184 650.2 653 55.7
A03p08790 Brassica napus HOM05D004543 ORTHO05D006042 1.4e-183 647.1 652 55.2
SHI28598 Sapria himalayana HOM05D004543 ORTHO05D006042 1.4e-183 647.1 711 52.9
C03p10280 Brassica napus HOM05D004543 ORTHO05D006042 3.2e-183 646.0 642 56.5
BraA03t10204Z Brassica rapa HOM05D004543 ORTHO05D006042 3.2e-183 646.0 642 56.5
SEGI_19802 Sequoiadendron giganteum HOM05D004543 ORTHO05D006042 1.0e-181 641.0 650 52.9
BcaB01g05188 Brassica carinata HOM05D004543 ORTHO05D006042 8.1e-179 631.3 622 56.4
Mapoly0003s0046 Marchantia polymorpha HOM05D004543 ORTHO05D006042 1.9e-167 593.6 648 51.2
Sabra12G0070400 Salix brachista HOM05D004543 ORTHO05D006042 4.5e-161 572.4 432 70.8
AagrBONN_evm.TU.Sc2ySwM_344.2190 Anthoceros agrestis HOM05D004543 ORTHO05D006042 6.3e-155 552.0 650 48.8
HPP92_007000 Vanilla planifolia HOM05D004543 ORTHO05D006042 1.3e-152 544.3 641 48.5
CBR_g49627 Chara braunii HOM05D004543 ORTHO05D006042 2.1e-150 537.0 652 46.9
Pp3c14_17740 Physcomitrium patens HOM05D004543 ORTHO05D006042 3.6e-150 536.2 654 46.9
Pp3c17_20170 Physcomitrium patens HOM05D004543 ORTHO05D006042 1.4e-146 524.2 649 47.0
Dinv04875 Davidia involucrata HOM05D004543 ORTHO05D006042 1.4e-143 514.2 421 64.1
SMO347G0349 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 1.6e-142 510.8 639 46.3
Rhsim08G0188800 Rhododendron simsii HOM05D004543 ORTHO05D006042 8.5e-136 488.4 421 61.5
Sc04g0000730 Simmondsia chinensis HOM05D004543 ORTHO05D006042 5.2e-133 479.2 429 59.7
CARHR232260 Cardamine hirsuta HOM05D004543 ORTHO05D006042 7.7e-129 465.3 429 58.0
Zm00001eb064480 Zea mays HOM05D004543 ORTHO05D006042 3.6e-126 456.4 430 56.5
DCAR_026221 Daucus carota HOM05D004543 ORTHO05D006042 4.2e-119 433.0 645 42.2
Medtr3g105000 Medicago truncatula HOM05D004543 ORTHO05D006042 1.2e-118 431.4 427 60.9
Sc04g0000720 Simmondsia chinensis HOM05D004543 ORTHO05D006042 1.6e-78 298.1 222 69.8
Manes.14G052401 Manihot esculenta HOM05D004543 ORTHO05D006042 3.8e-75 287.0 222 64.0
PRCOL_00002621 Prasinoderma coloniale HOM05D004543 ORTHO05D006042 2.5e-71 274.2 638 30.4
Cre09.g402750 Chlamydomonas reinhardtii HOM05D004543 ORTHO05D006042 6.9e-61 239.6 548 36.5
Medtr3g105005 Medicago truncatula HOM05D004543 ORTHO05D006042 3.2e-58 230.7 202 64.4
Hma1.2p1_0140F.1_g063430 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 3.7e-54 217.2 212 55.7
Medtr7g104380 Medicago truncatula HOM05D004543 ORTHO05D006042 1.2e-49 202.2 136 79.4
MCO07G105 Micromonas commoda HOM05D004543 ORTHO05D006042 1.6e-46 191.8 630 24.8
HPP92_006979 Vanilla planifolia HOM05D004543 ORTHO05D006042 2.7e-41 174.5 232 46.1
Rhsim02G0055400 Rhododendron simsii HOM05D004543 ORTHO05D006042 2.6e-31 141.4 91 75.8
Lsat_1_v5_gn_5_92440 Lactuca sativa HOM05D004543 ORTHO05D006042 5.7e-31 140.2 250 38.8
Manes.14G052501 Manihot esculenta HOM05D004543 ORTHO05D006042 1.5e-28 132.1 240 39.6
TPR.G34490 Trifolium pratense HOM05D004543 ORTHO05D006042 2.9e-27 127.9 67 100.0
Rhsim05G0168000 Rhododendron simsii HOM05D003391 ORTHO05D005563 1.2e-25 122.5 100 62.0
Rhsim04G0209800 Rhododendron simsii HOM05D004543 ORTHO05D006042 2.1e-25 121.7 88 67.0
Medtr1g076750 Medicago truncatula HOM05D004543 ORTHO05D006042 8.8e-24 116.3 81 77.8
Medtr6g087290 Medicago truncatula HOM05D004543 ORTHO05D006042 2.4e-21 108.2 101 59.4
Medtr0004s0190 Medicago truncatula HOM05D004543 ORTHO05D260927 1.2e-20 105.9 67 82.1
TPR.G19226 Trifolium pratense HOM05D004543 ORTHO05D006042 1.9e-18 98.6 56 92.9
Medtr5g009630 Medicago truncatula HOM05D004543 ORTHO05D004261 8.0e-17 93.2 55 83.6
SMO117G0159 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 1.8e-16 92.0 98 48.0
FAN06G0151 Fragaria x ananassa HOM05D004543 ORTHO05D022695 1.0e-11 76.3 117 41.0
FAN06G1316 Fragaria x ananassa HOM05D004543 ORTHO05D022695 1.3e-11 75.9 65 60.0
Hma1.2p1_0140F.1_g063450 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 1.3e-11 75.9 67 56.7
FvH4_7g19080 Fragaria vesca HOM05D000254 ORTHO05D022695 8.5e-11 73.2 65 58.5
Hma1.2p1_0140F.1_g063440 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 1.1e-10 72.8 127 37.8
SMO250G0003 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 5.5e-10 70.5 65 53.8
FAN08G3116 Fragaria x ananassa HOM05D003545 ORTHO05D004720 7.2e-10 70.1 63 58.7
SMO301G0055 Selaginella moellendorffii HOM05D004543 ORTHO05D000231 3.0e-08 64.7 169 26.6
FAN21G4007 Fragaria x ananassa HOM05D042832 ORTHO05D022695 3.7e-06 57.8 57 57.9
FAN18G2207 Fragaria x ananassa HOM05D003545 ORTHO05D004720 8.3e-06 56.6 63 52.4


User provided reference genes

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