Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G19215 Trifolium pratense HOM05D004927 ORTHO05D005798 4.6e-74 281.2 146 100.0
Psat0s2546g0040 Pisum sativum HOM05D004927 ORTHO05D005798 2.1e-55 219.2 148 81.8
Medtr4g103580 Medicago truncatula HOM05D004927 ORTHO05D005798 3.8e-52 208.4 149 78.5
Glyma.05G047500 Glycine max HOM05D004927 ORTHO05D005798 1.1e-43 180.3 155 64.5
Phvul.003G210400 Phaseolus vulgaris HOM05D004927 ORTHO05D005798 2.5e-40 169.1 155 62.6
Lj4g0014142 Lotus japonicus HOM05D004927 ORTHO05D005798 3.1e-38 162.2 145 66.2
Lalb_Chr13g0297281 Lupinus albus HOM05D004927 ORTHO05D005798 4.5e-37 158.3 138 61.6
Glyma.17G129300 Glycine max HOM05D004927 ORTHO05D005798 5.9e-37 157.9 150 60.0
Lalb_Chr12g0202181 Lupinus albus HOM05D004927 ORTHO05D005798 2.1e-34 149.4 148 59.5
CiPaw.12G042500 Carya illinoinensis HOM05D004927 ORTHO05D005798 1.4e-33 146.7 152 54.6
Ciclev10022591m.g Citrus clementina HOM05D004927 ORTHO05D005798 3.9e-33 145.2 155 56.1
TWI23G0043 Tripterygium wilfordii HOM05D004927 ORTHO05D005798 3.9e-33 145.2 151 53.6
CiPaw.11G008400 Carya illinoinensis HOM05D004927 ORTHO05D005798 9.7e-32 140.6 160 51.2
AL8G40520 Arabidopsis lyrata HOM05D004927 ORTHO05D005798 6.3e-31 137.9 151 53.0
Dinv23136 Davidia involucrata HOM05D004927 ORTHO05D005798 6.3e-31 137.9 157 51.6
GSVIVG01008533001 Vitis vinifera HOM05D004927 ORTHO05D005798 6.3e-31 137.9 155 53.5
PGR083G0131 Punica granatum HOM05D004927 ORTHO05D005798 1.4e-30 136.7 154 50.6
Sp2g26540 Schrenkiella parvula HOM05D004927 ORTHO05D005798 1.4e-30 136.7 148 52.7
VMungo1215G0874 Vigna mungo HOM05D004927 ORTHO05D005798 1.8e-30 136.3 135 57.8
Duzib068G0304 Durio zibethinus HOM05D004927 ORTHO05D005798 2.4e-30 136.0 152 51.3
Carub.0008s2416 Capsella rubella HOM05D004927 ORTHO05D005798 4.1e-30 135.2 153 53.6
CARHR277310 Cardamine hirsuta HOM05D004927 ORTHO05D005798 5.3e-30 134.8 151 51.7
Dinv11165 Davidia involucrata HOM05D004927 ORTHO05D005798 1.2e-29 133.7 157 50.3
Duzib205G1407 Durio zibethinus HOM05D004927 ORTHO05D005798 1.2e-29 133.7 150 50.0
CANSAT80G0771 Cannabis sativa HOM05D004927 ORTHO05D005798 1.5e-29 133.3 159 52.2
Thhalv10005047m.g Eutrema salsugineum HOM05D004927 ORTHO05D005798 1.5e-29 133.3 154 50.6
Actinidia25582 Actinidia chinensis HOM05D004927 ORTHO05D005798 2.0e-29 132.9 156 50.6
AT5G63460 Arabidopsis thaliana HOM05D004927 ORTHO05D005798 2.0e-29 132.9 151 51.7
Aa31LG1G18580 Aethionema arabicum HOM05D004927 ORTHO05D005798 1.0e-28 130.6 152 50.0
THA.LOC104818187 Tarenaya hassleriana HOM05D004927 ORTHO05D005798 1.0e-28 130.6 157 47.8
Thecc.03G128000 Theobroma cacao HOM05D004927 ORTHO05D005798 1.3e-28 130.2 152 50.7
BcaC04g23330 Brassica carinata HOM05D004927 ORTHO05D005798 1.7e-28 129.8 151 52.3
vmacro19200 Vaccinium macrocarpon HOM05D004927 ORTHO05D005798 1.7e-28 129.8 148 52.0
MD06G1142800 Malus domestica HOM05D004927 ORTHO05D005798 2.9e-28 129.0 153 52.9
arahy.Tifrunner.gnm1.ann1.9DG48R Arachis hypogaea HOM05D004927 ORTHO05D005798 6.5e-28 127.9 138 55.8
arahy.Tifrunner.gnm1.ann1.PKYK26 Arachis hypogaea HOM05D004927 ORTHO05D005798 6.5e-28 127.9 138 55.8
Prupe.5G152100 Prunus persica HOM05D004927 ORTHO05D005798 6.5e-28 127.9 157 50.3
CSS0046411 Camellia sinensis var. sinensis HOM05D004927 ORTHO05D005798 8.5e-28 127.5 151 49.7
Gohir.D11G039650 Gossypium hirsutum HOM05D004927 ORTHO05D005798 8.5e-28 127.5 147 49.0
Actinidia08867 Actinidia chinensis HOM05D004927 ORTHO05D005798 1.1e-27 127.1 151 51.7
Potri.015G094600 Populus trichocarpa HOM05D004927 ORTHO05D005798 1.1e-27 127.1 153 49.7
MELO3C026211.2 Cucumis melo HOM05D004927 ORTHO05D005798 1.4e-27 126.7 153 52.9
Potri.012G096900 Populus trichocarpa HOM05D004927 ORTHO05D005798 1.4e-27 126.7 155 49.0
CsaV3_1G000620 Cucumis sativus L. HOM05D004927 ORTHO05D005798 1.9e-27 126.3 153 52.9
MBI07_g34620_MAGBIO Magnolia biondii HOM05D004927 ORTHO05D005798 1.9e-27 126.3 152 52.6
Oeu056013.1 Olea europaea HOM05D004927 ORTHO05D005798 2.5e-27 125.9 162 49.4
THA.LOC104798947 Tarenaya hassleriana HOM05D004927 ORTHO05D005798 2.5e-27 125.9 148 48.0
TWI39G0602 Tripterygium wilfordii HOM05D004927 ORTHO05D005798 4.2e-27 125.2 156 48.7
Actinidia33102 Actinidia chinensis HOM05D004927 ORTHO05D005798 5.5e-27 124.8 159 48.4
Sed0011812 Sechium edule HOM05D004927 ORTHO05D005798 7.2e-27 124.4 155 51.6
MSTRG.11279 Avicennia marina HOM05D004927 ORTHO05D005798 1.2e-26 123.6 158 50.0
Manes.14G051700 Manihot esculenta HOM05D004927 ORTHO05D005798 1.2e-26 123.6 150 48.7
Aqoxy3G01521 Aquilegia oxysepala HOM05D004927 ORTHO05D005798 1.6e-26 123.2 159 47.8
Gorai.007G042600 Gossypium raimondii HOM05D004927 ORTHO05D005798 1.6e-26 123.2 151 48.3
HanXRQChr07g0193231 Helianthus annuus HOM05D004927 ORTHO05D005798 1.6e-26 123.2 158 47.5
Nn3g16487 Nelumbo nucifera HOM05D004927 ORTHO05D005798 1.6e-26 123.2 157 49.0
Atru.chr9.1061 Acer truncatum HOM05D004927 ORTHO05D005798 2.1e-26 122.9 153 49.0
Gohir.A11G036100 Gossypium hirsutum HOM05D004927 ORTHO05D005798 2.7e-26 122.5 147 49.7
Sc04g0000700 Simmondsia chinensis HOM05D004927 ORTHO05D005798 4.7e-26 121.7 137 52.6
Solyc03g111270.2 Solanum lycopersicum HOM05D004927 ORTHO05D005798 4.7e-26 121.7 153 47.7
Sopen03g030400 Solanum pennellii HOM05D004927 ORTHO05D005798 4.7e-26 121.7 153 47.7
Gorai.006G271700 Gossypium raimondii HOM05D004927 ORTHO05D005798 6.1e-26 121.3 146 48.6
CDE02G1054 Ceratophyllum demersum HOM05D004927 ORTHO05D005798 1.0e-25 120.6 140 50.0
Cc04_g10030 Coffea canephora HOM05D004927 ORTHO05D005798 1.4e-25 120.2 148 48.0
FvH4_5g08180 Fragaria vesca HOM05D004927 ORTHO05D005798 3.0e-25 119.0 151 49.7
MSTRG.4598 Avicennia marina HOM05D004927 ORTHO05D005798 3.9e-25 118.6 153 47.1
BcaB04g19918 Brassica carinata HOM05D004927 ORTHO05D005798 3.9e-25 118.6 142 52.1
A09p08260 Brassica napus HOM05D004927 ORTHO05D005798 3.9e-25 118.6 141 51.1
RcHm_v2.0_Chr7g0190331 Rosa chinensis HOM05D004927 ORTHO05D005798 6.7e-25 117.9 160 48.8
C09p09350 Brassica napus HOM05D000789 ORTHO05D005798 8.8e-25 117.5 145 50.3
BolC9t53847H Brassica oleracea HOM05D000789 ORTHO05D005798 8.8e-25 117.5 145 50.3
Nitab4.5_0003005g0020 Nicotiana tabacum HOM05D004927 ORTHO05D005798 8.8e-25 117.5 152 50.0
HPP92_001413 Vanilla planifolia HOM05D004927 ORTHO05D005798 2.6e-24 115.9 147 51.7
MD14G1158000 Malus domestica HOM05D004927 ORTHO05D005798 3.3e-24 115.5 158 46.8
TAR622G0157 Trochodendron aralioides HOM05D004927 ORTHO05D005798 4.4e-24 115.2 154 44.8
Manes.06G118800 Manihot esculenta HOM05D004927 ORTHO05D005798 7.4e-24 114.4 145 47.6
ECA247G2750 Erigeron canadensis HOM05D004927 ORTHO05D005798 1.7e-23 113.2 158 46.2
HanXRQChr09g0273101 Helianthus annuus HOM05D004927 ORTHO05D005798 2.8e-23 112.5 148 45.3
Rhsim08G0189300 Rhododendron simsii HOM05D004927 ORTHO05D005798 6.3e-23 111.3 170 44.1
PSO063G5502 Papaver somniferum HOM05D004927 ORTHO05D005798 8.2e-23 110.9 160 46.9
Gorai.004G275800 Gossypium raimondii HOM05D004927 ORTHO05D005798 1.4e-22 110.2 146 46.6
Oeu018539.1 Olea europaea HOM05D004927 ORTHO05D005798 1.4e-22 110.2 150 46.7
unitig_61.g26197 Utricularia gibba HOM05D004927 ORTHO05D005798 1.8e-22 109.8 175 46.3
AagrBONN_evm.TU.Sc2ySwM_344.432 Anthoceros agrestis HOM05D004927 ORTHO05D005798 4.1e-22 108.6 150 44.7
SGA_v2.0_scaffold215G42324 Striga asiatica HOM05D004927 ORTHO05D005798 4.1e-22 108.6 149 47.0
Dinv04882 Davidia involucrata HOM05D004927 ORTHO05D005798 5.3e-22 108.2 128 51.6
Sabra12G0070900 Salix brachista HOM05D004927 ORTHO05D005798 5.3e-22 108.2 156 45.5
BraA09t36477Z Brassica rapa HOM05D004927 ORTHO05D005798 7.0e-22 107.8 154 46.1
PSO017G7268 Papaver somniferum HOM05D004927 ORTHO05D005798 9.1e-22 107.5 159 47.2
Lsat_1_v5_gn_1_29040 Lactuca sativa HOM05D004927 ORTHO05D005798 1.2e-21 107.1 158 44.9
Gohir.A09G247250 Gossypium hirsutum HOM05D004927 ORTHO05D005798 2.6e-21 105.9 138 47.1
PSO478G0696 Papaver somniferum HOM05D004927 ORTHO05D005798 2.6e-21 105.9 159 46.5
FAN08G3438 Fragaria x ananassa HOM05D004927 ORTHO05D005798 3.4e-21 105.5 139 49.6
EL10As4g23391 Beta vulgaris HOM05D004927 ORTHO05D005798 5.9e-21 104.8 132 48.5
FAN18G3853 Fragaria x ananassa HOM05D004927 ORTHO05D005798 5.9e-21 104.8 139 48.9
FAN13G0393 Fragaria x ananassa HOM05D004927 ORTHO05D005798 1.0e-20 104.0 139 48.2
FAN04G0012 Fragaria x ananassa HOM05D004927 ORTHO05D005798 1.7e-20 103.2 139 48.2
Sabra15G0116000 Salix brachista HOM05D004927 ORTHO05D005798 2.2e-20 102.8 169 42.6
Zm00001eb169640 Zea mays HOM05D004927 ORTHO05D005798 2.9e-20 102.4 153 44.4
Os11g0483600 Oryza sativa ssp. japonica HOM05D004927 ORTHO05D005798 1.1e-19 100.5 163 42.9
BolC2t12346H Brassica oleracea HOM05D001512 ORTHO05D001574 1.9e-19 99.8 99 56.6
Gohir.D08G258600 Gossypium hirsutum HOM05D004927 ORTHO05D005798 3.2e-19 99.0 138 47.1
Lsat_1_v5_gn_4_80380 Lactuca sativa HOM05D004927 ORTHO05D005798 4.2e-19 98.6 150 44.7
DCAR_026226 Daucus carota HOM05D004927 ORTHO05D005798 7.2e-19 97.8 145 44.1
SalBow1G5982 Salvia bowleyana HOM05D004927 ORTHO05D005798 7.2e-19 97.8 133 46.6
C02p62750 Brassica napus HOM05D001512 ORTHO05D001574 9.4e-19 97.4 99 55.6
PSO782G2667 Papaver somniferum HOM05D004927 ORTHO05D005798 1.6e-18 96.7 154 44.2
QL10p003733 Quercus lobata HOM05D004927 ORTHO05D005798 1.6e-18 96.7 128 46.9
CBR_g27958 Chara braunii HOM05D004927 ORTHO05D005798 2.1e-18 96.3 161 42.2
Migut.D01264 Erythranthe guttata HOM05D004927 ORTHO05D005798 4.7e-18 95.1 151 41.7
Pp3c8_10310 Physcomitrium patens HOM05D004927 ORTHO05D005798 6.1e-18 94.7 153 42.5
Os12g0442900 Oryza sativa ssp. japonica HOM05D004927 ORTHO05D005798 1.8e-17 93.2 152 42.8
SGA_v2.0_scaffold161G37795 Striga asiatica HOM05D004927 ORTHO05D005798 5.7e-16 88.2 197 35.0
BcaC03g18207 Brassica carinata HOM05D004927 ORTHO05D005798 7.4e-16 87.8 137 43.1
SalBow1G7483 Salvia bowleyana HOM05D004927 ORTHO05D005798 7.4e-16 87.8 169 38.5
Haze_07225 Corylus avellana HOM05D004927 ORTHO05D005798 1.3e-15 87.0 103 45.6
Eucgr.B00112 Eucalyptus grandis HOM05D004927 ORTHO05D005798 1.3e-15 87.0 113 49.6
Nitab4.5_0016919g0010 Nicotiana tabacum HOM05D004927 ORTHO05D005798 1.3e-15 87.0 112 48.2
CBR_g36334 Chara braunii HOM05D004927 ORTHO05D005798 2.2e-15 86.3 169 37.3
ClCG06G017840 Citrullus lanatus HOM05D004927 ORTHO05D005798 5.3e-14 81.6 71 60.6
Gohir.A09G246700 Gossypium hirsutum HOM05D004927 ORTHO05D005798 9.1e-14 80.9 80 51.2
ATR0561G036 Amborella trichopoda HOM05D004927 ORTHO05D005798 1.2e-13 80.5 69 56.5
HPP92_001420 Vanilla planifolia HOM05D004927 ORTHO05D005798 1.2e-13 80.5 74 55.4
Mapoly0121s0035 Marchantia polymorpha HOM05D004927 ORTHO05D005798 1.6e-13 80.1 81 53.1
CDE05G1557 Ceratophyllum demersum HOM05D004927 ORTHO05D005798 2.6e-13 79.3 119 42.0
vmacro16676 Vaccinium macrocarpon HOM05D004927 ORTHO05D005798 2.5e-11 72.8 112 44.6
Migut.I00501 Erythranthe guttata HOM05D004927 ORTHO05D005798 3.2e-11 72.4 96 44.8
SMO334G0034 Selaginella moellendorffii HOM05D004927 ORTHO05D005798 3.2e-11 72.4 135 38.5
PGSC0003DMG400015243 Solanum tuberosum HOM05D004927 ORTHO05D005798 4.2e-11 72.0 157 36.9
Lj9A478G96 Lonicera japonica HOM05D004927 ORTHO05D005798 4.0e-09 65.5 147 36.7
BraA02t09201Z Brassica rapa HOM05D004927 ORTHO05D005798 8.8e-09 64.3 81 51.9
CAN.G352.25 Capsicum annuum HOM05D004927 ORTHO05D005798 1.5e-08 63.5 94 45.7
Gohir.D01G081600 Gossypium hirsutum HOM05D004927 ORTHO05D005798 7.5e-08 61.2 57 50.9
Gohir.D07G062100 Gossypium hirsutum HOM05D004927 ORTHO05D005798 7.5e-08 61.2 57 50.9
Gorai.007G057300 Gossypium raimondii HOM05D004927 ORTHO05D005798 7.5e-08 61.2 57 50.9
COL.COLO4_28098 Corchorus olitorius HOM05D004927 ORTHO05D005798 1.3e-07 60.5 79 46.8
Gohir.D09G248000 Gossypium hirsutum HOM05D004927 ORTHO05D005798 2.2e-07 59.7 61 49.2
Cfa018832 Carpinus fangiana HOM05D004927 ORTHO05D005798 3.7e-07 58.9 70 50.0
Gohir.D09G247201 Gossypium hirsutum HOM05D004927 ORTHO05D005798 3.7e-07 58.9 57 54.4
Gohir.D11G291800 Gossypium hirsutum HOM05D004927 ORTHO05D005798 4.8e-07 58.5 54 51.9
Cpa.g.sc13.128 Carica papaya HOM05D004927 ORTHO05D005798 8.2e-07 57.8 59 59.3
SEGI_27141 Sequoiadendron giganteum HOM05D004927 ORTHO05D005798 8.2e-07 57.8 67 47.8
Oeu037712.1 Olea europaea HOM05D004927 ORTHO05D005798 1.4e-06 57.0 37 70.3
SEGI_01314 Sequoiadendron giganteum HOM05D004927 ORTHO05D005798 1.4e-06 57.0 45 62.2
Lsat_1_v5_gn_5_95420 Lactuca sativa HOM05D004927 ORTHO05D005798 2.4e-06 56.2 107 36.4
PRCOL_00006426 Prasinoderma coloniale HOM05D004927 ORTHO05D005798 9.1e-06 54.3 69 42.0


User provided reference genes

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