Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G192 Trifolium pratense HOM05D002188 ORTHO05D002349 6.7e-15 82.8 41 100.0
Glyma.07G022700 Glycine max HOM05D002188 ORTHO05D002349 1.1e-12 75.5 41 92.7
Glyma.08G219100 Glycine max HOM05D002188 ORTHO05D002349 1.1e-12 75.5 41 92.7
Medtr4g007140 Medicago truncatula HOM05D002188 ORTHO05D002349 1.1e-12 75.5 41 92.7
Lj3g0017755 Lotus japonicus HOM05D002188 ORTHO05D002349 1.4e-12 75.1 41 92.7
ATR0580G114 Amborella trichopoda HOM05D002188 ORTHO05D002349 1.8e-12 74.7 41 90.2
Atru.chr1.2757 Acer truncatum HOM05D002188 ORTHO05D002349 3.1e-12 73.9 41 87.8
Cpa.g.sc67.24 Carica papaya HOM05D002188 ORTHO05D002349 3.1e-12 73.9 41 90.2
Ciclev10027515m.g Citrus clementina HOM05D002188 ORTHO05D002349 3.1e-12 73.9 41 90.2
Duzib235G1509 Durio zibethinus HOM05D002188 ORTHO05D002349 3.1e-12 73.9 41 90.2
Manes.03G081800 Manihot esculenta HOM05D002188 ORTHO05D002349 4.1e-12 73.6 41 90.2
MSTRG.11210 Avicennia marina HOM05D002188 ORTHO05D002349 5.3e-12 73.2 41 90.2
MSTRG.22828 Avicennia marina HOM05D002188 ORTHO05D002349 5.3e-12 73.2 41 90.2
TAR383G0722 Trochodendron aralioides HOM05D002188 ORTHO05D002349 5.3e-12 73.2 41 85.4
VMungo0331G0418 Vigna mungo HOM05D002188 ORTHO05D002349 5.3e-12 73.2 41 90.2
Gohir.A06G154600 Gossypium hirsutum HOM05D002188 ORTHO05D002349 7.0e-12 72.8 41 87.8
Gorai.010G188200 Gossypium raimondii HOM05D002188 ORTHO05D002349 7.0e-12 72.8 41 87.8
HanXRQChr05g0157561 Helianthus annuus HOM05D002188 ORTHO05D002349 7.0e-12 72.8 41 85.4
MBI16_g31786_MAGBIO Magnolia biondii HOM05D002188 ORTHO05D002349 7.0e-12 72.8 41 85.4
Psat7g262840 Pisum sativum HOM05D002188 ORTHO05D002349 7.0e-12 72.8 41 90.2
TWI75G0395 Tripterygium wilfordii HOM05D002188 ORTHO05D002349 7.0e-12 72.8 41 87.8
Ca_20541_v3 Cicer arietinum L. HOM05D002188 ORTHO05D002349 9.1e-12 72.4 41 87.8
MELO3C024887.2 Cucumis melo HOM05D002188 ORTHO05D002349 9.1e-12 72.4 41 82.9
Dinv13689 Davidia involucrata HOM05D002188 ORTHO05D002349 9.1e-12 72.4 41 87.8
CAN.G1089.6 Capsicum annuum HOM05D002188 ORTHO05D002349 1.2e-11 72.0 41 85.4
Dinv23252 Davidia involucrata HOM05D002188 ORTHO05D002349 1.2e-11 72.0 41 85.4
Duzib192G0244 Durio zibethinus HOM05D002188 ORTHO05D002349 1.2e-11 72.0 41 87.8
Gohir.A05G175200 Gossypium hirsutum HOM05D002188 ORTHO05D002349 1.2e-11 72.0 41 85.4
Gorai.009G183700 Gossypium raimondii HOM05D002188 ORTHO05D002349 1.2e-11 72.0 41 85.4
Nitab4.5_0004890g0020 Nicotiana tabacum HOM05D002188 ORTHO05D002349 1.2e-11 72.0 41 85.4
Nitab4.5_0005336g0010 Nicotiana tabacum HOM05D002188 ORTHO05D002349 1.2e-11 72.0 41 85.4
Potri.008G010400 Populus trichocarpa HOM05D002188 ORTHO05D002349 1.2e-11 72.0 41 87.8
Potri.010G248700 Populus trichocarpa HOM05D002188 ORTHO05D002349 1.2e-11 72.0 41 87.8
Sed0005899 Sechium edule HOM05D002188 ORTHO05D002349 1.2e-11 72.0 41 85.4
GSVIVG01016110001 Vitis vinifera HOM05D002188 ORTHO05D002349 1.2e-11 72.0 41 85.4
Cfa010420 Carpinus fangiana HOM05D002188 ORTHO05D002349 1.6e-11 71.6 41 85.4
COL.COLO4_31907 Corchorus olitorius HOM05D002188 ORTHO05D002349 1.6e-11 71.6 41 85.4
Nitab4.5_0000976g0290 Nicotiana tabacum HOM05D002188 ORTHO05D002349 1.6e-11 71.6 41 85.4
Phvul.010G161600 Phaseolus vulgaris HOM05D002188 ORTHO05D002349 1.6e-11 71.6 41 87.8
RcHm_v2.0_Chr2g0131481 Rosa chinensis HOM05D002188 ORTHO05D002349 1.6e-11 71.6 41 85.4
Sabra08G0006200 Salix brachista HOM05D002188 ORTHO05D002349 1.6e-11 71.6 41 85.4
SGA_v2.0_scaffold5G02823 Striga asiatica HOM05D002188 ORTHO05D002349 1.6e-11 71.6 41 85.4
Thecc.06G235500 Theobroma cacao HOM05D002188 ORTHO05D002349 1.6e-11 71.6 41 87.8
CiPaw.13G048800 Carya illinoinensis HOM05D002188 ORTHO05D002349 2.0e-11 71.2 41 85.4
Ca_01016_v3 Cicer arietinum L. HOM05D002188 ORTHO05D002349 2.0e-11 71.2 41 87.8
Ca_27799_v3 Cicer arietinum L. HOM05D002188 ORTHO05D002349 2.0e-11 71.2 41 87.8
ClCG10G012780 Citrullus lanatus HOM05D002188 ORTHO05D002349 2.0e-11 71.2 41 80.5
Lj3g0018096 Lotus japonicus HOM05D002188 ORTHO05D002349 2.0e-11 71.2 41 85.4
Manes.16G048000 Manihot esculenta HOM05D002188 ORTHO05D002349 2.0e-11 71.2 41 87.8
PGR031G0031 Punica granatum HOM05D002188 ORTHO05D002349 2.0e-11 71.2 41 85.4
TWI79G0362 Tripterygium wilfordii HOM05D002188 ORTHO05D002349 2.0e-11 71.2 41 85.4
Nitab4.5_0007669g0020 Nicotiana tabacum HOM05D002188 ORTHO05D002349 2.6e-11 70.9 41 85.4
Oeu033444.1 Olea europaea HOM05D002188 ORTHO05D002349 2.6e-11 70.9 41 82.9
Peaxi162Scf00207g00258 Petunia axillaris HOM05D002188 ORTHO05D002349 2.6e-11 70.9 41 82.9
Sabra10G0193800 Salix brachista HOM05D002188 ORTHO05D002349 2.6e-11 70.9 41 85.4
Solyc06g068670.3 Solanum lycopersicum HOM05D002188 ORTHO05D002349 2.6e-11 70.9 41 82.9
Sopen06g025950 Solanum pennellii HOM05D002188 ORTHO05D002349 2.6e-11 70.9 41 82.9
PGSC0003DMG400014224 Solanum tuberosum HOM05D002188 ORTHO05D002349 2.6e-11 70.9 41 85.4
PGSC0003DMG400028931 Solanum tuberosum HOM05D002188 ORTHO05D002349 2.6e-11 70.9 41 82.9
CSS0045687 Camellia sinensis var. sinensis HOM05D002188 ORTHO05D002349 3.5e-11 70.5 41 80.5
CsaV3_3G032620 Cucumis sativus L. HOM05D002188 ORTHO05D002349 3.5e-11 70.5 41 80.5
Medtr2g105090 Medicago truncatula HOM05D002188 ORTHO05D002349 3.5e-11 70.5 41 87.8
Nn8g40455 Nelumbo nucifera HOM05D002188 ORTHO05D002349 3.5e-11 70.5 41 85.4
Actinidia36854 Actinidia chinensis HOM05D002188 ORTHO05D002349 4.5e-11 70.1 41 85.4
CiPaw.14G038600 Carya illinoinensis HOM05D002188 ORTHO05D002349 4.5e-11 70.1 41 85.4
Lj5A84T52 Lonicera japonica HOM05D002188 ORTHO05D002349 4.5e-11 70.1 41 82.9
Phvul.005G181700 Phaseolus vulgaris HOM05D002188 ORTHO05D002349 4.5e-11 70.1 41 85.4
CAN.G1008.27 Capsicum annuum HOM05D002188 ORTHO05D002349 5.9e-11 69.7 41 82.9
Eucgr.J03143 Eucalyptus grandis HOM05D002188 ORTHO05D002349 5.9e-11 69.7 41 85.4
Peaxi162Scf00314g00827 Petunia axillaris HOM05D002188 ORTHO05D002349 5.9e-11 69.7 41 82.9
EL10Ac8g19457 Beta vulgaris HOM05D002188 ORTHO05D002349 7.7e-11 69.3 41 78.0
AUR62033055 Chenopodium quinoa HOM05D002188 ORTHO05D002349 7.7e-11 69.3 41 80.5
AUR62040785 Chenopodium quinoa HOM05D002188 ORTHO05D002349 7.7e-11 69.3 41 80.5
Gohir.D05G178200 Gossypium hirsutum HOM05D002188 ORTHO05D002349 7.7e-11 69.3 41 82.9
Lalb_Chr00c36g0408801 Lupinus albus HOM05D002188 ORTHO05D002349 7.7e-11 69.3 41 80.5
Lalb_Chr00c36g0408971 Lupinus albus HOM05D002188 ORTHO05D002349 7.7e-11 69.3 41 80.5
Lalb_Chr24g0392891 Lupinus albus HOM05D002188 ORTHO05D002349 7.7e-11 69.3 41 80.5
Rhsim12G0182800 Rhododendron simsii HOM05D002188 ORTHO05D002349 7.7e-11 69.3 41 85.4
FvH4_6g27920 Fragaria vesca HOM05D002188 ORTHO05D002349 1.0e-10 68.9 41 82.9
FAN02G0689 Fragaria x ananassa HOM05D002188 ORTHO05D002349 1.0e-10 68.9 41 82.9
FAN05G0617 Fragaria x ananassa HOM05D002188 ORTHO05D002349 1.0e-10 68.9 41 82.9
FAN09G4429 Fragaria x ananassa HOM05D002188 ORTHO05D002349 1.0e-10 68.9 41 82.9
FAN14G3767 Fragaria x ananassa HOM05D002188 ORTHO05D002349 1.0e-10 68.9 41 82.9
Solyc03g117890.3 Solanum lycopersicum HOM05D002188 ORTHO05D002349 1.0e-10 68.9 41 82.9
Sopen03g036800 Solanum pennellii HOM05D002188 ORTHO05D002349 1.0e-10 68.9 41 82.9
VMungo1080G0097 Vigna mungo HOM05D002188 ORTHO05D002349 1.0e-10 68.9 41 82.9
Actinidia08924 Actinidia chinensis HOM05D002188 ORTHO05D002349 1.3e-10 68.6 41 82.9
arahy.Tifrunner.gnm1.ann1.0M1DUZ Arachis hypogaea HOM05D002188 ORTHO05D002349 1.3e-10 68.6 41 82.9
arahy.Tifrunner.gnm1.ann1.4V2TIF Arachis hypogaea HOM05D002188 ORTHO05D002349 1.3e-10 68.6 41 82.9
Migut.I00646 Erythranthe guttata HOM05D002188 ORTHO05D002349 1.3e-10 68.6 41 82.9
MD09G1231700 Malus domestica HOM05D002188 ORTHO05D002349 1.3e-10 68.6 41 80.5
Aqoxy7G03010 Aquilegia oxysepala HOM05D002188 ORTHO05D002349 1.7e-10 68.2 41 80.5
arahy.Tifrunner.gnm1.ann1.65I9ND Arachis hypogaea HOM05D002188 ORTHO05D002349 1.7e-10 68.2 41 82.9
arahy.Tifrunner.gnm1.ann1.I7QGG2 Arachis hypogaea HOM05D002188 ORTHO05D002349 1.7e-10 68.2 41 82.9
Glyma.13G370200 Glycine max HOM05D002188 ORTHO05D002349 2.2e-10 67.8 41 82.9
Cc04_g05520 Coffea canephora HOM05D002188 ORTHO05D002349 2.9e-10 67.4 41 80.5
SalBow7G4051 Salvia bowleyana HOM05D002188 ORTHO05D002349 2.9e-10 67.4 41 80.5
Sed0018200 Sechium edule HOM05D002188 ORTHO05D002349 2.9e-10 67.4 41 75.6
Sc10g0008560 Simmondsia chinensis HOM05D002188 ORTHO05D002349 2.9e-10 67.4 41 78.0
CSS0007482 Camellia sinensis var. sinensis HOM05D002188 ORTHO05D002349 3.8e-10 67.0 41 78.0
Hma1.2p1_0338F.1_g129560 Hydrangea macrophylla HOM05D002188 ORTHO05D002349 3.8e-10 67.0 41 80.5
AL1G29050 Arabidopsis lyrata HOM05D002188 ORTHO05D002349 5.0e-10 66.6 41 78.0
AT1G16880 Arabidopsis thaliana HOM05D002188 ORTHO05D002349 5.0e-10 66.6 41 78.0
BcaB03g13028 Brassica carinata HOM05D002188 ORTHO05D002349 5.0e-10 66.6 41 78.0
BcaC07g38820 Brassica carinata HOM05D002188 ORTHO05D002349 5.0e-10 66.6 41 78.0
A08p31250 Brassica napus HOM05D002188 ORTHO05D002349 5.0e-10 66.6 41 78.0
C08p17590 Brassica napus HOM05D002188 ORTHO05D002349 5.0e-10 66.6 41 78.0
BolC8t49384H Brassica oleracea HOM05D002188 ORTHO05D002349 5.0e-10 66.6 41 78.0
BraA08t35048Z Brassica rapa HOM05D002188 ORTHO05D002349 5.0e-10 66.6 41 78.0
Carub.0001s1662 Capsella rubella HOM05D002188 ORTHO05D002349 5.0e-10 66.6 41 78.0
ECA232G4076 Erigeron canadensis HOM05D002188 ORTHO05D002349 5.0e-10 66.6 41 75.6
Lsat_1_v5_gn_4_85200 Lactuca sativa HOM05D002188 ORTHO05D002349 5.0e-10 66.6 41 75.6
Sp1g15020 Schrenkiella parvula HOM05D002188 ORTHO05D002349 5.0e-10 66.6 41 78.0
Prupe.3G107700 Prunus persica HOM05D002188 ORTHO05D002349 6.5e-10 66.2 41 78.0
THA.LOC104808099 Tarenaya hassleriana HOM05D002188 ORTHO05D002349 6.5e-10 66.2 41 75.6
Aa31LG7G1310 Aethionema arabicum HOM05D002188 ORTHO05D002349 8.5e-10 65.9 41 75.6
CANSAT64G1127 Cannabis sativa HOM05D002188 ORTHO05D002349 8.5e-10 65.9 41 78.0
HanXRQChr09g0274321 Helianthus annuus HOM05D002188 ORTHO05D002349 8.5e-10 65.9 41 75.6
BcaB02g06668 Brassica carinata HOM05D002188 ORTHO05D002349 1.1e-09 65.5 41 75.6
BraA06t24439Z Brassica rapa HOM05D002188 ORTHO05D002349 1.1e-09 65.5 41 75.6
PSO063G4716 Papaver somniferum HOM05D002188 ORTHO05D002349 1.1e-09 65.5 41 75.6
PSO170G4373 Papaver somniferum HOM05D002188 ORTHO05D002349 1.1e-09 65.5 41 75.6
Glyma.15G003200 Glycine max HOM05D002188 ORTHO05D002349 1.5e-09 65.1 41 80.5
Lsat_1_v5_gn_5_9221 Lactuca sativa HOM05D002188 ORTHO05D002349 1.5e-09 65.1 41 75.6
BcaC05g25544 Brassica carinata HOM05D002188 ORTHO05D002349 1.9e-09 64.7 41 75.6
BcaC05g25545 Brassica carinata HOM05D002188 ORTHO05D002349 1.9e-09 64.7 41 75.6
C05p15100 Brassica napus HOM05D002188 ORTHO05D002349 1.9e-09 64.7 41 75.6
BolC5t30225H Brassica oleracea HOM05D002188 ORTHO05D002349 1.9e-09 64.7 41 75.6
CDE02G4507 Ceratophyllum demersum HOM05D002188 ORTHO05D002349 1.9e-09 64.7 41 73.2
Thhalv10008354m.g Eutrema salsugineum HOM05D002188 ORTHO05D002349 1.9e-09 64.7 41 73.2
QL05p081598 Quercus lobata HOM05D002188 ORTHO05D002349 1.9e-09 64.7 40 80.0
Zm00001eb223200 Zea mays HOM05D002188 ORTHO05D002349 2.5e-09 64.3 41 73.2
MD17G1229500 Malus domestica HOM05D002188 ORTHO05D002349 3.2e-09 63.9 41 75.6
HPP92_020055 Vanilla planifolia HOM05D002188 ORTHO05D002349 3.2e-09 63.9 41 75.6
CDE04G3667 Ceratophyllum demersum HOM05D002188 ORTHO05D002349 4.2e-09 63.5 41 70.7
DCAR_021386 Daucus carota HOM05D002188 ORTHO05D002349 4.2e-09 63.5 41 73.2
unitig_61.g26218 Utricularia gibba HOM05D002188 ORTHO05D002349 7.2e-09 62.8 41 73.2
SEGI_04357 Sequoiadendron giganteum HOM05D002188 ORTHO05D002349 2.7e-08 60.8 41 68.3
SMO143G0274 Selaginella moellendorffii HOM05D002188 ORTHO05D002349 2.3e-07 57.8 38 73.7
HPP92_013809 Vanilla planifolia HOM05D002188 ORTHO05D002349 5.2e-07 56.6 41 68.3
Actinidia06694 Actinidia chinensis HOM05D002188 ORTHO05D002349 2.6e-06 54.3 41 61.0
CSS0039944 Camellia sinensis var. sinensis HOM05D002188 ORTHO05D002349 2.6e-06 54.3 41 61.0
CSS0042973 Camellia sinensis var. sinensis HOM05D002188 ORTHO05D002349 2.6e-06 54.3 41 61.0
Rhsim03G0098400 Rhododendron simsii HOM05D002188 ORTHO05D002349 2.6e-06 54.3 41 61.0
TAR633G0325 Trochodendron aralioides HOM05D002188 ORTHO05D002349 2.6e-06 54.3 41 61.0
SEGI_39322 Sequoiadendron giganteum HOM05D002188 ORTHO05D002349 3.3e-06 53.9 41 61.0
GSVIVG01001004001 Vitis vinifera HOM05D002188 ORTHO05D002349 3.3e-06 53.9 41 63.4
Sc06g0002360 Simmondsia chinensis HOM05D002188 ORTHO05D002349 4.4e-06 53.5 41 61.0
Ah.04g160210 Amaranthus hybridus HOM05D002188 ORTHO05D002349 5.7e-06 53.1 41 61.0
MSTRG.27576 Avicennia marina HOM05D002188 ORTHO05D002349 5.7e-06 53.1 41 61.0
EL10Ac4g08680 Beta vulgaris HOM05D002188 ORTHO05D002349 5.7e-06 53.1 41 61.0
AUR62042077 Chenopodium quinoa HOM05D002188 ORTHO05D002349 5.7e-06 53.1 41 61.0
AUR62043604 Chenopodium quinoa HOM05D002188 ORTHO05D002349 5.7e-06 53.1 41 61.0
DCAR_015654 Daucus carota HOM05D002188 ORTHO05D002349 5.7e-06 53.1 41 61.0
Hma1.2p1_1596F.1_g292800 Hydrangea macrophylla HOM05D002188 ORTHO05D002349 5.7e-06 53.1 41 61.0
Hund06779 Selenicereus undatus HOM05D002188 ORTHO05D002349 5.7e-06 53.1 41 61.0
SGA_v2.0_scaffold62G21337 Striga asiatica HOM05D002188 ORTHO05D002349 5.7e-06 53.1 41 61.0
TAR636G2121 Trochodendron aralioides HOM05D002188 ORTHO05D002349 5.7e-06 53.1 41 61.0
Pp3c15_10370 Physcomitrium patens HOM05D002188 ORTHO05D002349 7.5e-06 52.8 41 56.1
AL6G14400 Arabidopsis lyrata HOM05D002188 ORTHO05D002349 9.7e-06 52.4 41 61.0
AT5G04740 Arabidopsis thaliana HOM05D002188 ORTHO05D002349 9.7e-06 52.4 41 61.0
Carub.0006s0363 Capsella rubella HOM05D002188 ORTHO05D002349 9.7e-06 52.4 41 61.0


User provided reference genes

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