Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G19139 Trifolium pratense HOM05D005599 ORTHO05D006921 2.1e-67 258.8 123 100.0
Medtr1g069405 Medicago truncatula HOM05D005599 ORTHO05D006921 8.6e-66 253.4 123 96.7
Psat6g049960 Pisum sativum HOM05D005599 ORTHO05D006921 8.1e-64 246.9 123 95.9
Ca_21512_v3 Cicer arietinum L. HOM05D005599 ORTHO05D006921 9.9e-62 240.0 123 91.1
Glyma.16G057902 Glycine max HOM05D005599 ORTHO05D006921 2.7e-59 231.9 123 87.8
Glyma.19G089600 Glycine max HOM05D005599 ORTHO05D006921 6.6e-58 227.3 122 86.9
Lj6g0000510 Lotus japonicus HOM05D005599 ORTHO05D006921 4.3e-57 224.6 123 86.2
Phvul.001G094900 Phaseolus vulgaris HOM05D005599 ORTHO05D006921 2.1e-56 222.2 123 83.7
Lalb_Chr08g0237401 Lupinus albus HOM05D005599 ORTHO05D006921 1.1e-55 219.9 123 83.7
TWI79G1349 Tripterygium wilfordii HOM05D005599 ORTHO05D006921 1.1e-55 219.9 123 82.1
CiPaw.06G011400 Carya illinoinensis HOM05D005599 ORTHO05D006921 1.8e-55 219.2 123 81.3
Manes.15G128100 Manihot esculenta HOM05D005599 ORTHO05D006921 2.4e-55 218.8 123 82.1
Duzib251G0393 Durio zibethinus HOM05D005599 ORTHO05D006921 3.1e-55 218.4 121 83.5
VMungo0464G0261 Vigna mungo HOM05D005599 ORTHO05D006921 3.1e-55 218.4 123 82.9
Prupe.1G325600 Prunus persica HOM05D005599 ORTHO05D006921 4.0e-55 218.0 123 81.3
GSVIVG01011752001 Vitis vinifera HOM05D005599 ORTHO05D006921 9.0e-55 216.9 123 82.1
QL01p001565 Quercus lobata HOM05D005599 ORTHO05D006921 1.5e-54 216.1 122 82.0
Hund09673 Selenicereus undatus HOM05D005599 ORTHO05D006921 1.5e-54 216.1 123 81.3
Sc14g0007100 Simmondsia chinensis HOM05D005599 ORTHO05D006921 2.6e-54 215.3 123 81.3
Thecc.02G282300 Theobroma cacao HOM05D005599 ORTHO05D006921 3.4e-54 214.9 121 82.6
Gohir.A03G120800 Gossypium hirsutum HOM05D005599 ORTHO05D006921 4.4e-54 214.5 122 81.1
ClCG07G006660 Citrullus lanatus HOM05D005599 ORTHO05D006921 5.8e-54 214.2 123 81.3
Rhsim09G0066400 Rhododendron simsii HOM05D005599 ORTHO05D006921 5.8e-54 214.2 123 82.9
Cfa008617 Carpinus fangiana HOM05D005599 ORTHO05D006921 7.6e-54 213.8 123 79.7
MD16G1027400 Malus domestica HOM05D005599 ORTHO05D006921 9.9e-54 213.4 123 79.7
vmacro14440 Vaccinium macrocarpon HOM05D005599 ORTHO05D006921 9.9e-54 213.4 123 81.3
Ciclev10017195m.g Citrus clementina HOM05D005599 ORTHO05D006921 1.3e-53 213.0 123 78.9
COL.COLO4_20491 Corchorus olitorius HOM05D005599 ORTHO05D006921 1.3e-53 213.0 126 81.0
CsaV3_5G013870 Cucumis sativus L. HOM05D005599 ORTHO05D006921 1.3e-53 213.0 123 80.5
Hma1.2p1_0096F.1_g047800 Hydrangea macrophylla HOM05D005599 ORTHO05D006921 1.3e-53 213.0 123 82.9
AUR62032768 Chenopodium quinoa HOM05D005599 ORTHO05D006921 1.7e-53 212.6 123 79.7
Potri.008G129900 Populus trichocarpa HOM05D005599 ORTHO05D006921 2.2e-53 212.2 123 79.7
Sed0017153 Sechium edule HOM05D005599 ORTHO05D006921 2.2e-53 212.2 122 80.3
Gohir.D02G144100 Gossypium hirsutum HOM05D005599 ORTHO05D006921 3.8e-53 211.5 121 81.0
MD13G1024900 Malus domestica HOM05D005599 ORTHO05D006921 6.4e-53 210.7 123 78.0
EL10Ac9g21851 Beta vulgaris HOM05D005599 ORTHO05D006921 1.1e-52 209.9 123 78.9
THA.LOC104823847 Tarenaya hassleriana HOM05D005599 ORTHO05D006921 1.1e-52 209.9 123 79.7
MELO3C018308.2 Cucumis melo HOM05D005599 ORTHO05D006921 1.4e-52 209.5 123 79.7
TAR622G1178 Trochodendron aralioides HOM05D005599 ORTHO05D006921 1.9e-52 209.1 123 77.2
Cc11_g08600 Coffea canephora HOM05D005599 ORTHO05D006921 2.4e-52 208.8 123 78.9
Nitab4.5_0000426g0280 Nicotiana tabacum HOM05D005599 ORTHO05D006921 3.2e-52 208.4 122 79.5
Nitab4.5_0004230g0050 Nicotiana tabacum HOM05D005599 ORTHO05D006921 3.2e-52 208.4 122 79.5
Atru.chr11.497 Acer truncatum HOM05D005599 ORTHO05D006921 5.4e-52 207.6 120 79.2
Aa31LG2G8490 Aethionema arabicum HOM05D005599 ORTHO05D006921 7.1e-52 207.2 121 78.5
Dinv14427 Davidia involucrata HOM05D005599 ORTHO05D006921 9.3e-52 206.8 123 78.9
Peaxi162Scf00253g01125 Petunia axillaris HOM05D005599 ORTHO05D006921 9.3e-52 206.8 123 78.0
Ah.04g163140 Amaranthus hybridus HOM05D005599 ORTHO05D006921 1.2e-51 206.5 123 76.4
FAN05G3069 Fragaria x ananassa HOM05D005599 ORTHO05D006921 1.2e-51 206.5 123 77.2
FAN12G4015 Fragaria x ananassa HOM05D005599 ORTHO05D006921 1.2e-51 206.5 123 77.2
FAN25G3147 Fragaria x ananassa HOM05D005599 ORTHO05D006921 1.2e-51 206.5 123 77.2
RcHm_v2.0_Chr4g0425701 Rosa chinensis HOM05D005599 ORTHO05D006921 1.2e-51 206.5 123 77.2
PGR004G1422 Punica granatum HOM05D005599 ORTHO05D006921 2.7e-51 205.3 123 75.6
PGSC0003DMG400005984 Solanum tuberosum HOM05D005599 ORTHO05D006921 2.7e-51 205.3 122 79.5
Potri.010G112300 Populus trichocarpa HOM05D005599 ORTHO05D006921 4.6e-51 204.5 121 78.5
AL1G27050 Arabidopsis lyrata HOM05D005599 ORTHO05D006921 7.8e-51 203.8 123 76.4
FAN07G1516 Fragaria x ananassa HOM05D005599 ORTHO05D006921 7.8e-51 203.8 123 76.4
Zm00001eb161570 Zea mays HOM05D005599 ORTHO05D006921 7.8e-51 203.8 123 77.2
AT1G14990 Arabidopsis thaliana HOM05D005599 ORTHO05D006921 1.0e-50 203.4 123 74.8
CAN.G1244.3 Capsicum annuum HOM05D005599 ORTHO05D006921 1.0e-50 203.4 122 77.0
DCAR_026778 Daucus carota HOM05D005599 ORTHO05D006921 1.0e-50 203.4 123 75.6
Eucgr.B01298 Eucalyptus grandis HOM05D005599 ORTHO05D006921 1.3e-50 203.0 123 76.4
Carub.0001s1476 Capsella rubella HOM05D005599 ORTHO05D006921 1.7e-50 202.6 123 76.4
MBI16_g23758_MAGBIO Magnolia biondii HOM05D005599 ORTHO05D006921 1.7e-50 202.6 122 75.4
Solyc04g007700.3 Solanum lycopersicum HOM05D005599 ORTHO05D006921 3.0e-50 201.8 122 77.9
CARHR015530 Cardamine hirsuta HOM05D005599 ORTHO05D006921 3.9e-50 201.4 123 74.0
DCAR_023596 Daucus carota HOM05D005599 ORTHO05D006921 5.1e-50 201.1 123 74.0
A06p11010 Brassica napus HOM05D005599 ORTHO05D006921 8.7e-50 200.3 123 75.6
A09p61660 Brassica napus HOM05D005599 ORTHO05D006921 8.7e-50 200.3 121 75.2
FvH4_4g19980 Fragaria vesca HOM05D005599 ORTHO05D006921 1.1e-49 199.9 123 76.4
BcaB02g06563 Brassica carinata HOM05D005599 ORTHO05D006921 1.5e-49 199.5 123 74.8
Sopen04g002790 Solanum pennellii HOM05D005599 ORTHO05D006921 1.5e-49 199.5 122 77.0
MSTRG.6631 Avicennia marina HOM05D005599 ORTHO05D006921 1.9e-49 199.1 122 76.2
PSO170G3715 Papaver somniferum HOM05D005599 ORTHO05D006921 2.5e-49 198.7 122 75.4
Sp1g13380 Schrenkiella parvula HOM05D005599 ORTHO05D006921 2.5e-49 198.7 123 74.8
ATR0796G095 Amborella trichopoda HOM05D005599 ORTHO05D006921 5.6e-49 197.6 120 75.0
HanXRQChr08g0212121 Helianthus annuus HOM05D005599 ORTHO05D006921 5.6e-49 197.6 122 77.0
Os01g0606050 Oryza sativa ssp. japonica HOM05D005599 ORTHO05D006921 5.6e-49 197.6 123 74.8
Aqoxy3G01068 Aquilegia oxysepala HOM05D005599 ORTHO05D006921 7.3e-49 197.2 120 75.0
BolC5t30050H Brassica oleracea HOM05D005599 ORTHO05D006921 9.6e-49 196.8 123 74.8
CDE07G0704 Ceratophyllum demersum HOM05D005599 ORTHO05D006921 2.1e-48 195.7 122 73.8
Lsat_1_v5_gn_9_79661 Lactuca sativa HOM05D005599 ORTHO05D006921 4.8e-48 194.5 121 76.0
RcHm_v2.0_Chr4g0441361 Rosa chinensis HOM05D005599 ORTHO05D006921 4.8e-48 194.5 131 71.0
arahy.Tifrunner.gnm1.ann1.UU8CC3 Arachis hypogaea HOM05D005599 ORTHO05D006921 8.1e-48 193.7 106 83.0
BolC8t52072H Brassica oleracea HOM05D005599 ORTHO05D006921 8.1e-48 193.7 136 68.4
HanXRQChr12g0364441 Helianthus annuus HOM05D005599 ORTHO05D006921 1.8e-47 192.6 122 74.6
arahy.Tifrunner.gnm1.ann1.5FG4B2 Arachis hypogaea HOM05D005599 ORTHO05D006921 3.1e-47 191.8 105 82.9
ECA236G1659 Erigeron canadensis HOM05D005599 ORTHO05D006921 3.1e-47 191.8 122 74.6
CSS0007655 Camellia sinensis var. sinensis HOM05D005599 ORTHO05D006921 4.0e-47 191.4 106 83.0
CSS0037826 Camellia sinensis var. sinensis HOM05D005599 ORTHO05D006921 4.0e-47 191.4 106 83.0
BraA09t41538Z Brassica rapa HOM05D005599 ORTHO05D006921 6.9e-47 190.7 139 66.2
arahy.Tifrunner.gnm1.ann1.5G098T Arachis hypogaea HOM05D005599 ORTHO05D006921 9.0e-47 190.3 106 81.1
HPP92_003868 Vanilla planifolia HOM05D005599 ORTHO05D006921 9.0e-47 190.3 122 73.0
HPP92_003899 Vanilla planifolia HOM05D005599 ORTHO05D006921 9.0e-47 190.3 122 73.0
SGA_v2.0_scaffold181G39695 Striga asiatica HOM05D005599 ORTHO05D006921 2.0e-46 189.1 120 72.5
Dinv07654 Davidia involucrata HOM05D005599 ORTHO05D006921 2.6e-46 188.7 104 83.7
SGA_v2.0_scaffold154G37132 Striga asiatica HOM05D005599 ORTHO05D006921 4.5e-46 188.0 120 71.7
Haze_10995 Corylus avellana HOM05D005599 ORTHO05D006921 5.8e-46 187.6 113 76.1
Cpa.g.sc65.146 Carica papaya HOM05D005599 ORTHO05D006921 7.6e-46 187.2 118 72.9
CANSAT11G1373 Cannabis sativa HOM05D005599 ORTHO05D006921 9.9e-46 186.8 123 69.9
unitig_899.g15269 Utricularia gibba HOM05D005599 ORTHO05D006921 1.3e-45 186.4 118 73.7
C05p13060 Brassica napus HOM05D005599 ORTHO05D006921 4.9e-45 184.5 131 67.9
Oeu045860.1 Olea europaea HOM05D005599 ORTHO05D006921 2.4e-44 182.2 105 79.0
AUR62042684 Chenopodium quinoa HOM05D005599 ORTHO05D006921 9.3e-44 180.3 109 74.3
Gorai.005G161400 Gossypium raimondii HOM05D005599 ORTHO05D006921 1.2e-43 179.9 104 78.8
Oeu003383.1 Olea europaea HOM05D005599 ORTHO05D006921 3.5e-43 178.3 105 79.0
vmacro00414 Vaccinium macrocarpon HOM05D005599 ORTHO05D006921 3.5e-43 178.3 106 78.3
Sabra08G0098500 Salix brachista HOM05D005599 ORTHO05D006921 7.9e-43 177.2 106 76.4
CSS0001207 Camellia sinensis var. sinensis HOM05D005599 ORTHO05D006921 1.0e-42 176.8 106 76.4
SEGI_33740 Sequoiadendron giganteum HOM05D005599 ORTHO05D006921 6.7e-42 174.1 116 68.1
Sed0011013 Sechium edule HOM05D005599 ORTHO05D006921 1.9e-41 172.6 106 75.5
Thhalv10009435m.g Eutrema salsugineum HOM05D005599 ORTHO05D006921 2.5e-41 172.2 106 73.6
SGA_v2.0_scaffold6G03128 Striga asiatica HOM05D005599 ORTHO05D006921 7.4e-41 170.6 121 66.1
PSO782G0484 Papaver somniferum HOM05D005599 ORTHO05D006921 9.6e-41 170.2 107 72.9
BraA06t24281Z Brassica rapa HOM05D005599 ORTHO05D006921 1.6e-40 169.5 106 72.6
C08p45240 Brassica napus HOM05D005599 ORTHO05D006921 6.2e-40 167.5 104 72.1
Sabra10G0082600 Salix brachista HOM05D005599 ORTHO05D006921 1.1e-39 166.8 104 73.1
AUR62014127 Chenopodium quinoa HOM05D005599 ORTHO05D006921 1.4e-39 166.4 86 86.0
Aqoxy1G03319 Aquilegia oxysepala HOM05D005599 ORTHO05D006921 3.4e-38 161.8 104 71.2
Migut.M00054 Erythranthe guttata HOM05D005599 ORTHO05D006921 5.8e-38 161.0 120 68.3
BcaC07g38244 Brassica carinata HOM05D005599 ORTHO05D006921 2.9e-37 158.7 106 69.8
C08p09930 Brassica napus HOM05D005599 ORTHO05D006921 2.9e-37 158.7 106 69.8
BolC8t48670H Brassica oleracea HOM05D005599 ORTHO05D006921 2.9e-37 158.7 106 69.8
Eucgr.E01608 Eucalyptus grandis HOM05D005599 ORTHO05D006921 8.2e-32 140.6 107 62.6
Pp3c16_10100 Physcomitrium patens HOM05D005599 ORTHO05D006921 2.6e-30 135.6 111 53.2
arahy.Tifrunner.gnm1.ann1.XM49AS Arachis hypogaea HOM05D005599 ORTHO05D006921 2.9e-29 132.1 88 68.2
BcaC05g25431 Brassica carinata HOM05D005599 ORTHO05D006921 1.4e-28 129.8 123 54.5
Mapoly0035s0140 Marchantia polymorpha HOM05D005599 ORTHO05D006921 1.4e-28 129.8 109 56.0
Eucgr.B02904 Eucalyptus grandis HOM05D005599 ORTHO05D006921 1.0e-26 123.6 95 60.0
SGA_v2.0_scaffold2G00929 Striga asiatica HOM05D005599 ORTHO05D006921 9.0e-23 110.5 65 75.4
MBI16_g23757_MAGBIO Magnolia biondii HOM05D005599 ORTHO05D006921 3.0e-18 95.5 68 64.7
MBI16_g23756_MAGBIO Magnolia biondii HOM05D000079 ORTHO05D016475 4.3e-17 91.7 69 60.9
Nn4g24251 Nelumbo nucifera HOM05D005599 ORTHO05D006921 4.8e-16 88.2 57 71.9
CBR_g40805 Chara braunii HOM05D005599 ORTHO05D006921 9.1e-15 84.0 65 56.9
DCAR_032107 Daucus carota HOM05D005599 ORTHO05D006921 2.2e-13 79.3 50 66.0
SGA_v2.0_scaffold135G34854 Striga asiatica HOM05D005599 ORTHO05D006921 1.4e-10 70.1 40 67.5
QL08p008929 Quercus lobata HOM05D005599 ORTHO05D006921 1.5e-09 66.6 50 62.0


User provided reference genes

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