Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G19116 Trifolium pratense HOM05D006312 ORTHO05D007843 3.7e-97 358.2 183 100.0
Psat3g060840 Pisum sativum HOM05D006312 ORTHO05D007843 1.5e-77 293.1 178 84.8
Ca_08638_v3 Cicer arietinum L. HOM05D006312 ORTHO05D007843 4.9e-73 278.1 185 79.5
Medtr7g095930 Medicago truncatula HOM05D006312 ORTHO05D007843 1.5e-66 256.5 184 75.5
Glyma.03G158200 Glycine max HOM05D006312 ORTHO05D007843 3.5e-63 245.4 170 75.9
Phvul.001G155800 Phaseolus vulgaris HOM05D006312 ORTHO05D007843 3.9e-62 241.9 183 71.0
VMungo1383G0261 Vigna mungo HOM05D006312 ORTHO05D007843 8.6e-62 240.7 163 76.1
Glyma.19G160500 Glycine max HOM05D006312 ORTHO05D007843 1.2e-60 236.9 186 68.8
arahy.Tifrunner.gnm1.ann1.YWP2KZ Arachis hypogaea HOM05D006312 ORTHO05D007843 1.8e-59 233.0 192 65.1
Lj1g0018795 Lotus japonicus HOM05D006312 ORTHO05D007843 1.5e-58 229.9 177 67.8
arahy.Tifrunner.gnm1.ann1.Y34PHS Arachis hypogaea HOM05D006312 ORTHO05D007843 2.0e-58 229.6 191 66.0
MD02G1107600 Malus domestica HOM05D006312 ORTHO05D007843 9.9e-58 227.3 138 80.4
Thecc.05G202100 Theobroma cacao HOM05D006312 ORTHO05D007843 6.0e-55 218.0 172 65.1
RcHm_v2.0_Chr2g0096661 Rosa chinensis HOM05D006312 ORTHO05D007843 1.7e-54 216.5 134 76.9
COL.COLO4_27421 Corchorus olitorius HOM05D006312 ORTHO05D007843 3.0e-54 215.7 186 62.9
TWI34G0319 Tripterygium wilfordii HOM05D006312 ORTHO05D007843 3.9e-54 215.3 138 77.5
TAR376G0343 Trochodendron aralioides HOM05D006312 ORTHO05D007843 3.9e-54 215.3 138 75.4
Prupe.7G188400 Prunus persica HOM05D006312 ORTHO05D007843 1.5e-53 213.4 136 75.0
MBI04_g11525_MAGBIO Magnolia biondii HOM05D006312 ORTHO05D007843 1.9e-53 213.0 134 78.4
Eucgr.J02573 Eucalyptus grandis HOM05D006312 ORTHO05D007843 3.3e-53 212.2 148 70.3
CANSAT21G2119 Cannabis sativa HOM05D006312 ORTHO05D007843 5.6e-53 211.5 132 75.8
Gohir.A13G006700 Gossypium hirsutum HOM05D006312 ORTHO05D007843 5.6e-53 211.5 144 72.2
Manes.02G117611 Manihot esculenta HOM05D006312 ORTHO05D007843 5.6e-53 211.5 174 64.4
Atru.chr2.1887 Acer truncatum HOM05D006312 ORTHO05D007843 7.3e-53 211.1 138 75.4
Ciclev10012864m.g Citrus clementina HOM05D006312 ORTHO05D007843 7.3e-53 211.1 142 74.6
Sabra16G0308500 Salix brachista HOM05D006312 ORTHO05D007843 1.2e-52 210.3 134 76.1
PGR102G2008 Punica granatum HOM05D006312 ORTHO05D007843 1.6e-52 209.9 132 78.0
Gorai.013G007100 Gossypium raimondii HOM05D006312 ORTHO05D007843 2.8e-52 209.1 174 62.6
Cpa.g.sc178.37 Carica papaya HOM05D006312 ORTHO05D007843 4.7e-52 208.4 134 73.9
Gohir.D13G006900 Gossypium hirsutum HOM05D006312 ORTHO05D007843 4.7e-52 208.4 174 62.1
Potri.001G455900 Populus trichocarpa HOM05D006312 ORTHO05D007843 4.7e-52 208.4 134 75.4
Hund13396 Selenicereus undatus HOM05D006312 ORTHO05D007843 4.7e-52 208.4 130 75.4
Sed0011609 Sechium edule HOM05D006312 ORTHO05D007843 8.1e-52 207.6 132 73.5
Aqoxy6G03048 Aquilegia oxysepala HOM05D006312 ORTHO05D007843 1.4e-51 206.8 153 68.0
FAN19G0451 Fragaria x ananassa HOM05D006312 ORTHO05D007843 6.8e-51 204.5 145 71.7
CsaV3_6G052950 Cucumis sativus L. HOM05D006312 ORTHO05D007843 1.2e-50 203.8 143 69.2
ATR0605G230 Amborella trichopoda HOM05D006312 ORTHO05D007843 2.6e-50 202.6 127 76.4
FAN23G3058 Fragaria x ananassa HOM05D006312 ORTHO05D007843 2.6e-50 202.6 141 72.3
CSS0005301 Camellia sinensis var. sinensis HOM05D006312 ORTHO05D007843 3.4e-50 202.2 132 74.2
CSS0026635 Camellia sinensis var. sinensis HOM05D006312 ORTHO05D007843 3.4e-50 202.2 132 74.2
FvH4_1g09790 Fragaria vesca HOM05D006312 ORTHO05D007843 3.4e-50 202.2 141 72.3
FAN28G0218 Fragaria x ananassa HOM05D006312 ORTHO05D007843 3.4e-50 202.2 141 72.3
DCAR_016700 Daucus carota HOM05D006312 ORTHO05D007843 4.4e-50 201.8 143 68.5
FAN23G0139 Fragaria x ananassa HOM05D006312 ORTHO05D007843 4.4e-50 201.8 134 74.6
FAN26G2993 Fragaria x ananassa HOM05D006312 ORTHO05D007843 4.4e-50 201.8 134 74.6
Cfa007119 Carpinus fangiana HOM05D006312 ORTHO05D007843 7.6e-50 201.1 174 59.8
MELO3C007014.2 Cucumis melo HOM05D006312 ORTHO05D007843 7.6e-50 201.1 132 72.7
PSO675G2564 Papaver somniferum HOM05D006312 ORTHO05D007843 9.9e-50 200.7 150 70.0
Hma1.2p1_0034F.1_g021580 Hydrangea macrophylla HOM05D006312 ORTHO05D007843 1.3e-49 200.3 176 61.9
Sc10g0004590 Simmondsia chinensis HOM05D006312 ORTHO05D007843 2.2e-49 199.5 137 71.5
Actinidia28758 Actinidia chinensis HOM05D006312 ORTHO05D007843 2.9e-49 199.1 142 69.7
PSO541G2566 Papaver somniferum HOM05D006312 ORTHO05D007843 2.9e-49 199.1 150 70.0
EL10Ac2g02752 Beta vulgaris HOM05D006312 ORTHO05D007843 4.9e-49 198.4 119 79.0
QL06p053470 Quercus lobata HOM05D006312 ORTHO05D007843 8.4e-49 197.6 163 65.0
Rhsim08G0025300 Rhododendron simsii HOM05D006312 ORTHO05D007843 2.4e-48 196.1 140 67.1
Actinidia35692 Actinidia chinensis HOM05D006312 ORTHO05D007843 7.1e-48 194.5 142 66.9
CAN.G883.25 Capsicum annuum HOM05D006312 ORTHO05D007843 7.1e-48 194.5 135 71.9
Lsat_1_v5_gn_3_68340 Lactuca sativa HOM05D006312 ORTHO05D007843 7.1e-48 194.5 142 68.3
AUR62031725 Chenopodium quinoa HOM05D006312 ORTHO05D007843 9.2e-48 194.1 117 77.8
Oeu024786.1 Olea europaea HOM05D006312 ORTHO05D007843 9.2e-48 194.1 120 80.0
AL5G31950 Arabidopsis lyrata HOM05D006312 ORTHO05D007843 1.6e-47 193.4 132 71.2
AUR62032612 Chenopodium quinoa HOM05D006312 ORTHO05D007843 1.6e-47 193.4 117 77.8
ClCG01G025710 Citrullus lanatus HOM05D006312 ORTHO05D007843 2.7e-47 192.6 143 65.7
AT3G51510 Arabidopsis thaliana HOM05D006312 ORTHO05D007843 4.6e-47 191.8 132 69.7
Potri.011G146200 Populus trichocarpa HOM05D006312 ORTHO05D007843 4.6e-47 191.8 136 69.1
Solyc02g068270.4 Solanum lycopersicum HOM05D006312 ORTHO05D007843 1.0e-46 190.7 135 69.6
Sopen02g017370 Solanum pennellii HOM05D006312 ORTHO05D007843 1.0e-46 190.7 136 69.9
Lalb_Chr01g0019941 Lupinus albus HOM05D006312 ORTHO05D007843 1.3e-46 190.3 193 58.5
Carub.0005s1789 Capsella rubella HOM05D006312 ORTHO05D007843 2.3e-46 189.5 130 70.0
CARHR161090 Cardamine hirsuta HOM05D006312 ORTHO05D007843 3.0e-46 189.1 132 70.5
HPP92_005603 Vanilla planifolia HOM05D006312 ORTHO05D007843 3.0e-46 189.1 132 69.7
A01p23400 Brassica napus HOM05D006312 ORTHO05D007843 3.9e-46 188.7 130 71.5
BraA01t02247Z Brassica rapa HOM05D006312 ORTHO05D007843 3.9e-46 188.7 130 71.5
C01p29030 Brassica napus HOM05D006312 ORTHO05D007843 5.1e-46 188.3 130 71.5
BolC1t02835H Brassica oleracea HOM05D006312 ORTHO05D007843 5.1e-46 188.3 130 71.5
Peaxi162Scf00981g00214 Petunia axillaris HOM05D006312 ORTHO05D007843 5.1e-46 188.3 126 73.0
Cc07_g12330 Coffea canephora HOM05D006312 ORTHO05D007843 6.6e-46 188.0 186 55.4
ECA246G0189 Erigeron canadensis HOM05D006312 ORTHO05D007843 6.6e-46 188.0 174 59.2
Sp5g10730 Schrenkiella parvula HOM05D006312 ORTHO05D007843 8.7e-46 187.6 130 70.8
Nitab4.5_0003141g0020 Nicotiana tabacum HOM05D006312 ORTHO05D007843 1.1e-45 187.2 119 74.8
Nitab4.5_0003878g0040 Nicotiana tabacum HOM05D006312 ORTHO05D007843 1.1e-45 187.2 119 74.8
SEGI_12518 Sequoiadendron giganteum HOM05D006312 ORTHO05D007843 1.5e-45 186.8 132 68.9
MSTRG.3652 Avicennia marina HOM05D006312 ORTHO05D007843 2.5e-45 186.0 139 70.5
THA.LOC104815359 Tarenaya hassleriana HOM05D006312 ORTHO05D007843 3.3e-45 185.7 116 76.7
Thhalv10010756m.g Eutrema salsugineum HOM05D006312 ORTHO05D007843 4.3e-45 185.3 130 70.8
BcaNung00380 Brassica carinata HOM05D006312 ORTHO05D007843 5.6e-45 184.9 130 70.0
THA.LOC104808852 Tarenaya hassleriana HOM05D006312 ORTHO05D007843 5.6e-45 184.9 143 65.0
C08p26760 Brassica napus HOM05D006312 ORTHO05D007843 1.2e-44 183.7 145 65.5
BolC8t50289H Brassica oleracea HOM05D006312 ORTHO05D007843 1.2e-44 183.7 145 65.5
SGA_v2.0_scaffold132G34566 Striga asiatica HOM05D006312 ORTHO05D007843 1.6e-44 183.3 124 72.6
BraA09t39926Z Brassica rapa HOM05D006312 ORTHO05D007843 3.6e-44 182.2 131 70.2
MD15G1226900 Malus domestica HOM05D006312 ORTHO05D007843 4.7e-44 181.8 118 75.4
BcaB01g00508 Brassica carinata HOM05D006312 ORTHO05D007843 8.1e-44 181.0 132 68.9
HanXRQChr16g0532211 Helianthus annuus HOM05D006312 ORTHO05D007843 8.1e-44 181.0 124 70.2
SalBow5G1176 Salvia bowleyana HOM05D006312 ORTHO05D007843 8.1e-44 181.0 115 73.9
A09p44660 Brassica napus HOM05D006312 ORTHO05D007843 1.4e-43 180.3 132 68.9
Dinv28290 Davidia involucrata HOM05D006312 ORTHO05D007843 1.2e-42 177.2 125 72.0
Dinv24398 Davidia involucrata HOM05D006312 ORTHO05D007843 1.5e-42 176.8 124 71.8
FAN23G0893 Fragaria x ananassa HOM05D006312 ORTHO05D007843 9.9e-42 174.1 105 78.1
CDE07G0026 Ceratophyllum demersum HOM05D006312 ORTHO05D007843 2.9e-41 172.6 132 67.4
Migut.K01209 Erythranthe guttata HOM05D006312 ORTHO05D007843 2.9e-41 172.6 182 54.9
Zm00001eb291320 Zea mays HOM05D006312 ORTHO05D007843 1.4e-40 170.2 117 68.4
Os05g0490900 Oryza sativa ssp. japonica HOM05D006312 ORTHO05D007843 1.2e-39 167.2 133 66.2
CiPaw.08G182900 Carya illinoinensis HOM05D006312 ORTHO05D007843 2.1e-39 166.4 116 71.6
Nn6g34643 Nelumbo nucifera HOM05D006312 ORTHO05D007843 3.5e-39 165.6 110 73.6
unitig_748.g7258 Utricularia gibba HOM05D006312 ORTHO05D007843 5.6e-37 158.3 132 61.4
Lj2A507T48 Lonicera japonica HOM05D006312 ORTHO05D007843 1.6e-36 156.8 107 72.0
Hma1.2p1_0034F.1_g021590 Hydrangea macrophylla HOM05D006312 ORTHO05D007843 4.8e-36 155.2 112 69.6
Haze_03648 Corylus avellana HOM05D006312 ORTHO05D007843 6.2e-36 154.8 148 54.7
GSVIVG01026613001 Vitis vinifera HOM05D006312 ORTHO05D007843 5.3e-35 151.8 84 86.9
vmacro18480 Vaccinium macrocarpon HOM05D006312 ORTHO05D007843 2.6e-34 149.4 116 64.7
Ah.12g058670 Amaranthus hybridus HOM05D006312 ORTHO05D007843 1.3e-33 147.1 95 73.7
AUR62037337 Chenopodium quinoa HOM05D006312 ORTHO05D007843 1.4e-32 143.7 97 72.2
SMO356G0733 Selaginella moellendorffii HOM05D006312 ORTHO05D007843 3.2e-32 142.5 110 60.0
AagrBONN_evm.TU.Sc2ySwM_117.3170 Anthoceros agrestis HOM05D006312 ORTHO05D007843 9.3e-32 141.0 123 53.7
CBR_g16852 Chara braunii HOM05D006312 ORTHO05D007843 1.3e-30 137.1 125 56.0
Pp3c12_25230 Physcomitrium patens HOM05D006312 ORTHO05D007843 2.8e-28 129.4 138 47.8
Mapoly0072s0008 Marchantia polymorpha HOM05D006312 ORTHO05D007843 1.8e-27 126.7 122 49.2
Cre16.g679300 Chlamydomonas reinhardtii HOM05D006312 ORTHO05D007843 1.8e-19 100.1 122 46.7
Aa31LG10G3290 Aethionema arabicum HOM05D001371 ORTHO05D001319 7.6e-18 94.7 117 49.6
MCO03G312 Micromonas commoda HOM05D006312 ORTHO05D007843 8.4e-17 91.3 98 48.0
CSS0018042 Camellia sinensis var. sinensis HOM05D006312 ORTHO05D007843 1.0e-14 84.3 52 75.0
CSS0013138 Camellia sinensis var. sinensis HOM05D006312 ORTHO05D007843 5.9e-10 68.6 61 54.1
Manes.01G158400 Manihot esculenta HOM05D006312 ORTHO05D007843 1.8e-06 57.0 65 53.8
PRCOL_00002065 Prasinoderma coloniale HOM05D006312 ORTHO05D007843 2.3e-06 56.6 81 40.7


User provided reference genes

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