Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G191 Trifolium pratense HOM05D004439 ORTHO05D005670 1.5e-112 409.5 198 100.0
Ca_15072_v3 Cicer arietinum L. HOM05D004439 ORTHO05D005670 2.8e-98 362.1 183 95.6
Ca_15083_v3 Cicer arietinum L. HOM05D004439 ORTHO05D005670 7.8e-93 344.0 175 95.4
Medtr3g062490 Medicago truncatula HOM05D004439 ORTHO05D005670 4.3e-91 338.2 175 92.6
Glyma.14G028200 Glycine max HOM05D004439 ORTHO05D005670 3.6e-90 335.1 175 93.1
Glyma.02G286600 Glycine max HOM05D004439 ORTHO05D005670 1.4e-89 333.2 175 92.6
VMungo0647G0731 Vigna mungo HOM05D004439 ORTHO05D005670 7.6e-88 327.4 175 91.4
Phvul.009G207100 Phaseolus vulgaris HOM05D004439 ORTHO05D005670 1.4e-86 323.2 175 90.3
Psat5g147560 Pisum sativum HOM05D004439 ORTHO05D005670 3.2e-86 322.0 175 90.9
Lj1g0018659 Lotus japonicus HOM05D004439 ORTHO05D005670 6.6e-84 314.3 175 86.9
arahy.Tifrunner.gnm1.ann1.X9M6Z3 Arachis hypogaea HOM05D004439 ORTHO05D005670 3.2e-78 295.4 175 81.7
arahy.Tifrunner.gnm1.ann1.FA9VAL Arachis hypogaea HOM05D004439 ORTHO05D005670 9.3e-78 293.9 175 81.1
COL.COLO4_10686 Corchorus olitorius HOM05D004439 ORTHO05D005670 9.3e-78 293.9 175 80.6
Lj8A194T41 Lonicera japonica HOM05D004439 ORTHO05D005670 1.2e-77 293.5 175 80.6
Lj8C209T4 Lonicera japonica HOM05D004439 ORTHO05D005670 1.2e-77 293.5 175 80.6
Duzib205G1996 Durio zibethinus HOM05D004439 ORTHO05D005670 1.6e-77 293.1 175 80.0
RcHm_v2.0_Chr7g0195041 Rosa chinensis HOM05D004439 ORTHO05D005670 4.6e-77 291.6 176 80.1
FvH4_5g04460 Fragaria vesca HOM05D004439 ORTHO05D005670 7.9e-77 290.8 175 80.6
FAN18G4375 Fragaria x ananassa HOM05D004439 ORTHO05D005670 7.9e-77 290.8 175 80.6
GSVIVG01019518001 Vitis vinifera HOM05D004439 ORTHO05D005670 7.9e-77 290.8 175 79.4
arahy.Tifrunner.gnm1.ann1.URL0E3 Arachis hypogaea HOM05D004439 ORTHO05D005670 1.0e-76 290.4 175 80.6
arahy.Tifrunner.gnm1.ann1.B833UN Arachis hypogaea HOM05D004439 ORTHO05D005670 1.7e-76 289.7 175 80.6
Duzib084G1213 Durio zibethinus HOM05D004439 ORTHO05D005670 5.1e-76 288.1 175 80.0
Prupe.5G117700 Prunus persica HOM05D004439 ORTHO05D005670 6.6e-76 287.7 177 78.0
DCAR_029884 Daucus carota HOM05D004439 ORTHO05D005670 8.7e-76 287.3 185 74.6
CANSAT21G0267 Cannabis sativa HOM05D004439 ORTHO05D005670 1.1e-75 287.0 175 78.3
FAN04G2433 Fragaria x ananassa HOM05D004439 ORTHO05D005670 1.1e-75 287.0 175 78.9
CSS0017274 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 1.5e-75 286.6 175 78.9
CSS0021285 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 1.5e-75 286.6 175 78.9
Cpa.g.sc79.44 Carica papaya HOM05D004439 ORTHO05D005670 1.9e-75 286.2 175 78.3
Gohir.A12G236000 Gossypium hirsutum HOM05D004439 ORTHO05D005670 1.9e-75 286.2 175 78.3
Gohir.D12G237200 Gossypium hirsutum HOM05D004439 ORTHO05D005670 1.9e-75 286.2 175 78.3
Gorai.008G253800 Gossypium raimondii HOM05D004439 ORTHO05D005670 3.3e-75 285.4 175 77.7
Nn2g14269 Nelumbo nucifera HOM05D004439 ORTHO05D005670 3.3e-75 285.4 171 80.1
FAN18G2355 Fragaria x ananassa HOM05D004439 ORTHO05D005670 4.3e-75 285.0 176 79.5
Cfa023584 Carpinus fangiana HOM05D004439 ORTHO05D005670 1.3e-74 283.5 175 77.7
DCAR_006321 Daucus carota HOM05D004439 ORTHO05D005670 2.8e-74 282.3 175 77.1
FAN08G0613 Fragaria x ananassa HOM05D004439 ORTHO05D005670 2.8e-74 282.3 176 78.4
Lalb_Chr16g0376971 Lupinus albus HOM05D004439 ORTHO05D005670 2.8e-74 282.3 175 76.6
CiPaw.11G122200 Carya illinoinensis HOM05D004439 ORTHO05D005670 3.6e-74 282.0 174 79.3
Thecc.03G296500 Theobroma cacao HOM05D004439 ORTHO05D005670 3.6e-74 282.0 175 78.9
vmacro13901 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 3.6e-74 282.0 171 78.4
Ciclev10020115m.g Citrus clementina HOM05D004439 ORTHO05D005670 4.8e-74 281.6 175 78.3
TAR629G1063 Trochodendron aralioides HOM05D004439 ORTHO05D005670 8.1e-74 280.8 175 76.6
arahy.Tifrunner.gnm1.ann1.4X43I0 Arachis hypogaea HOM05D004439 ORTHO05D005670 1.4e-73 280.0 180 77.8
Manes.11G128600 Manihot esculenta HOM05D004439 ORTHO05D005670 1.8e-73 279.6 174 76.4
FAN13G1146 Fragaria x ananassa HOM05D004439 ORTHO05D005670 5.3e-73 278.1 176 77.3
Sopen08g030490 Solanum pennellii HOM05D004439 ORTHO05D005670 5.3e-73 278.1 175 76.0
Atru.chr9.2010 Acer truncatum HOM05D004439 ORTHO05D005670 6.9e-73 277.7 175 78.3
Eucgr.E00854 Eucalyptus grandis HOM05D004439 ORTHO05D005670 9.0e-73 277.3 176 75.0
Lsat_1_v5_gn_6_12240 Lactuca sativa HOM05D004439 ORTHO05D005670 1.5e-72 276.6 175 78.3
vmacro05785 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 1.5e-72 276.6 171 77.2
MD06G1105400 Malus domestica HOM05D004439 ORTHO05D005670 2.0e-72 276.2 177 76.8
Sc01g0010250 Simmondsia chinensis HOM05D004439 ORTHO05D005670 2.0e-72 276.2 175 74.3
Solyc08g082200.3 Solanum lycopersicum HOM05D004439 ORTHO05D005670 2.0e-72 276.2 175 75.4
MBI07_g27257_MAGBIO Magnolia biondii HOM05D004439 ORTHO05D005670 3.4e-72 275.4 171 77.2
Dinv38840 Davidia involucrata HOM05D004439 ORTHO05D005670 5.8e-72 274.6 175 76.0
Potri.003G104700 Populus trichocarpa HOM05D004439 ORTHO05D005670 5.8e-72 274.6 175 75.4
EL10Ac5g12905 Beta vulgaris HOM05D004439 ORTHO05D005670 7.6e-72 274.2 178 73.6
Nitab4.5_0001231g0030 Nicotiana tabacum HOM05D004439 ORTHO05D005670 1.3e-71 273.5 175 76.6
Peaxi162Scf00074g01028 Petunia axillaris HOM05D004439 ORTHO05D005670 2.2e-71 272.7 175 76.0
CsaV3_5G039570 Cucumis sativus L. HOM05D004439 ORTHO05D005670 2.9e-71 272.3 175 74.3
Hund11394 Selenicereus undatus HOM05D004439 ORTHO05D005670 4.9e-71 271.6 178 74.7
Nitab4.5_0008661g0010 Nicotiana tabacum HOM05D004439 ORTHO05D005670 6.4e-71 271.2 175 76.6
TWI81G0104 Tripterygium wilfordii HOM05D004439 ORTHO05D005670 6.4e-71 271.2 175 73.1
AUR62019828 Chenopodium quinoa HOM05D004439 ORTHO05D005670 6.0e-69 264.6 170 74.7
Cc08_g15970 Coffea canephora HOM05D004439 ORTHO05D005670 6.0e-69 264.6 175 74.3
CAN.G532.113 Capsicum annuum HOM05D004439 ORTHO05D005670 1.0e-68 263.8 175 72.0
Sed0005226 Sechium edule HOM05D004439 ORTHO05D005670 1.0e-68 263.8 175 71.4
Ah.12g052480 Amaranthus hybridus HOM05D004439 ORTHO05D005670 3.0e-68 262.3 188 67.6
QL02p030851 Quercus lobata HOM05D004439 ORTHO05D005670 3.9e-68 261.9 171 74.9
Haze_08623 Corylus avellana HOM05D004439 ORTHO05D005670 1.5e-67 260.0 163 76.7
Zm00001eb346380 Zea mays HOM05D004439 ORTHO05D005670 1.9e-67 259.6 178 71.3
MSTRG.1809 Avicennia marina HOM05D004439 ORTHO05D005670 2.5e-67 259.2 179 69.8
ATR0320G020 Amborella trichopoda HOM05D004439 ORTHO05D005670 7.4e-67 257.7 174 71.3
Oeu063530.1 Olea europaea HOM05D004439 ORTHO05D005670 1.3e-66 256.9 175 72.0
Migut.A00663 Erythranthe guttata HOM05D004439 ORTHO05D005670 1.6e-66 256.5 175 69.1
unitig_92.g28124 Utricularia gibba HOM05D004439 ORTHO05D005670 1.4e-65 253.4 179 66.5
Rhsim07G0082800 Rhododendron simsii HOM05D004439 ORTHO05D005670 1.0e-63 247.3 171 70.2
BcaC02g08908 Brassica carinata HOM05D004439 ORTHO05D005670 1.7e-63 246.5 175 65.7
A04p15000 Brassica napus HOM05D004439 ORTHO05D005670 1.7e-63 246.5 175 65.7
C04p49290 Brassica napus HOM05D004439 ORTHO05D005670 1.7e-63 246.5 175 65.7
BolC4t26514H Brassica oleracea HOM05D004439 ORTHO05D005670 1.7e-63 246.5 175 65.7
BraA04t17145Z Brassica rapa HOM05D004439 ORTHO05D005670 1.7e-63 246.5 175 65.7
SalBow1G1193 Salvia bowleyana HOM05D004439 ORTHO05D005670 2.2e-63 246.1 178 66.3
Actinidia27332 Actinidia chinensis HOM05D004439 ORTHO05D005670 2.9e-63 245.7 181 69.1
PSO339G0633 Papaver somniferum HOM05D004439 ORTHO05D005670 2.9e-63 245.7 175 69.1
ECA233G4302 Erigeron canadensis HOM05D004439 ORTHO05D005670 3.8e-63 245.4 175 69.1
Aqoxy1G01152 Aquilegia oxysepala HOM05D004439 ORTHO05D005670 4.9e-63 245.0 175 68.0
AL7G47340 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 1.4e-62 243.4 175 65.7
HanXRQChr05g0138501 Helianthus annuus HOM05D004439 ORTHO05D005670 1.4e-62 243.4 175 68.6
HanXRQChr06g0184201 Helianthus annuus HOM05D004439 ORTHO05D005670 1.4e-62 243.4 175 69.7
PSO384G1647 Papaver somniferum HOM05D004439 ORTHO05D005670 1.9e-62 243.0 175 67.4
A07p20990 Brassica napus HOM05D004439 ORTHO05D005670 4.2e-62 241.9 175 63.4
HPP92_001588 Vanilla planifolia HOM05D004439 ORTHO05D005670 4.2e-62 241.9 171 68.4
C06p20300 Brassica napus HOM05D004439 ORTHO05D005670 5.5e-62 241.5 175 64.0
CARHR212680 Cardamine hirsuta HOM05D004439 ORTHO05D005670 5.5e-62 241.5 175 64.0
BcaB06g27677 Brassica carinata HOM05D004439 ORTHO05D005670 7.1e-62 241.1 178 63.5
BcaC08g44563 Brassica carinata HOM05D004439 ORTHO05D005670 7.1e-62 241.1 175 63.4
THA.LOC104809335 Tarenaya hassleriana HOM05D004439 ORTHO05D005670 7.1e-62 241.1 175 64.6
Sp7g00230 Schrenkiella parvula HOM05D004439 ORTHO05D005670 9.3e-62 240.7 175 65.1
Aqoxy5G04196 Aquilegia oxysepala HOM05D004439 ORTHO05D005670 1.2e-61 240.4 175 67.4
BcaB02g07872 Brassica carinata HOM05D004439 ORTHO05D005670 1.2e-61 240.4 175 62.9
Carub.0007s3348 Capsella rubella HOM05D004439 ORTHO05D005670 1.2e-61 240.4 175 63.4
AT5G41880 Arabidopsis thaliana HOM05D004439 ORTHO05D005670 4.6e-61 238.4 175 62.9
Mapoly0061s0010 Marchantia polymorpha HOM05D004439 ORTHO05D005670 7.9e-61 237.7 175 64.0
Thhalv10027750m.g Eutrema salsugineum HOM05D004439 ORTHO05D005670 1.8e-60 236.5 175 64.0
Aa31LG9G280 Aethionema arabicum HOM05D004439 ORTHO05D005670 7.4e-59 231.1 175 64.0
BcaNung06856 Brassica carinata HOM05D004439 ORTHO05D005670 1.8e-57 226.5 177 61.0
AUR62010830 Chenopodium quinoa HOM05D004439 ORTHO05D005670 6.9e-57 224.6 154 69.5
Rhsim09G0008900 Rhododendron simsii HOM05D004439 ORTHO05D005670 3.4e-56 222.2 170 65.3
SGA_v2.0_scaffold305G47954 Striga asiatica HOM05D004439 ORTHO05D005670 1.9e-54 216.5 190 57.4
CBR_g51004 Chara braunii HOM05D004439 ORTHO05D005670 3.0e-52 209.1 175 53.7
CDE02G4298 Ceratophyllum demersum HOM05D004439 ORTHO05D005670 3.9e-52 208.8 147 67.3
CBR_g30932 Chara braunii HOM05D004439 ORTHO05D005670 5.1e-52 208.4 178 53.4
Pp3c9_1070 Physcomitrium patens HOM05D004439 ORTHO05D005670 1.1e-51 207.2 178 53.4
HPP92_001766 Vanilla planifolia HOM05D004439 ORTHO05D005670 1.1e-51 207.2 177 61.6
Sabra03G0071700 Salix brachista HOM05D004439 ORTHO05D005670 9.7e-51 204.1 150 69.3
arahy.Tifrunner.gnm1.ann1.JNH9P6 Arachis hypogaea HOM05D004439 ORTHO05D005670 1.2e-48 197.2 153 67.3
AagrBONN_evm.TU.Sc2ySwM_117.2781 Anthoceros agrestis HOM05D004439 ORTHO05D005670 2.0e-48 196.4 176 53.4
MELO3C031246.2 Cucumis melo HOM05D004439 ORTHO05D005670 2.2e-47 193.0 158 61.4
TPR.G3794 Trifolium pratense HOM05D004439 ORTHO05D005670 2.1e-45 186.4 94 95.7
SMO361G0316 Selaginella moellendorffii HOM05D004439 ORTHO05D005670 4.8e-42 175.3 183 49.7
ClCG08G001530 Citrullus lanatus HOM05D004439 ORTHO05D005670 1.1e-41 174.1 126 70.6
SMO361G0219 Selaginella moellendorffii HOM05D004439 ORTHO05D005670 9.1e-41 171.0 183 48.1
Cre07.g312350 Chlamydomonas reinhardtii HOM05D004439 ORTHO05D005670 2.0e-35 153.3 183 39.3
RcHm_v2.0_Chr6g0245391 Rosa chinensis HOM05D004439 ORTHO05D005670 9.7e-35 151.0 114 67.5
Lj2A169G40 Lonicera japonica HOM05D004439 ORTHO05D005670 1.7e-34 150.2 105 73.3
MELO3C027184.2 Cucumis melo HOM05D004439 ORTHO05D005670 2.8e-34 149.4 87 77.0
SEGI_14966 Sequoiadendron giganteum HOM05D004439 ORTHO05D005670 1.4e-33 147.1 120 56.7
RcHm_v2.0_Chr5g0068871 Rosa chinensis HOM05D004439 ORTHO05D005670 2.4e-33 146.4 177 49.2
MD14G1127500 Malus domestica HOM05D004439 ORTHO05D005670 2.9e-31 139.4 115 60.9
Cfa025390 Carpinus fangiana HOM05D004439 ORTHO05D005670 2.1e-29 133.3 175 41.7
TPR.G22107 Trifolium pratense HOM05D004439 ORTHO05D005670 4.7e-29 132.1 70 92.9
PRCOL_00003494 Prasinoderma coloniale HOM05D004439 ORTHO05D005670 4.4e-27 125.6 181 36.5
CSS0041217 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 2.0e-24 116.7 170 45.9
TPR.G9934 Trifolium pratense HOM05D004439 ORTHO05D005670 8.0e-21 104.8 121 57.9
TPR.G9939 Trifolium pratense HOM05D004439 ORTHO05D005670 1.3e-18 97.4 45 95.6
PGSC0003DMG400012290 Solanum tuberosum HOM05D004439 ORTHO05D005670 3.7e-18 95.9 67 67.2
SHI03128 Sapria himalayana HOM05D004439 ORTHO05D005670 8.3e-18 94.7 71 69.0
RcHm_v2.0_Chr6g0245381 Rosa chinensis HOM05D004439 ORTHO05D005670 3.6e-13 79.3 36 88.9
AL2G23180 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 2.0e-11 73.6 138 39.9
TPR.G13893 Trifolium pratense HOM05D004439 ORTHO05D005670 2.0e-11 73.6 32 90.6
AL3G52130 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 2.6e-11 73.2 128 39.8
AL1G55640 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 3.4e-11 72.8 128 39.8
Actinidia27323 Actinidia chinensis HOM05D004439 ORTHO05D005670 1.3e-10 70.9 65 56.9
Actinidia27324 Actinidia chinensis HOM05D004439 ORTHO05D005670 8.3e-10 68.2 36 83.3


User provided reference genes

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