Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G1907 Trifolium pratense HOM05D005997 ORTHO05D008323 8.0e-177 623.6 310 100.0
Medtr3g055920 Medicago truncatula HOM05D005997 ORTHO05D008323 2.3e-144 515.8 307 86.6
Psat5g172000 Pisum sativum HOM05D005997 ORTHO05D008323 3.8e-142 508.4 308 83.4
Ca_20145_v3 Cicer arietinum L. HOM05D005997 ORTHO05D008323 8.6e-139 497.3 309 81.6
Ca_20142_v3 Cicer arietinum L. HOM05D005997 ORTHO05D008323 3.6e-137 491.9 309 80.9
Lj6g0009736 Lotus japonicus HOM05D005997 ORTHO05D008323 2.4e-136 489.2 307 79.8
Glyma.08G325100 Glycine max HOM05D005997 ORTHO05D008323 6.2e-129 464.5 308 76.0
Lalb_Chr06g0174051 Lupinus albus HOM05D005997 ORTHO05D008323 9.0e-128 460.7 301 75.7
Phvul.006G051400 Phaseolus vulgaris HOM05D005997 ORTHO05D008323 1.2e-127 460.3 308 76.6
VMungo0540G2314 Vigna mungo HOM05D005997 ORTHO05D008323 3.4e-127 458.8 306 76.8
arahy.Tifrunner.gnm1.ann1.N1CS9Q Arachis hypogaea HOM05D005997 ORTHO05D008323 1.3e-123 446.8 333 71.2
arahy.Tifrunner.gnm1.ann1.JACZ02 Arachis hypogaea HOM05D005997 ORTHO05D008323 6.7e-123 444.5 334 70.4
Thecc.07G024000 Theobroma cacao HOM05D005997 ORTHO05D008323 1.1e-112 410.6 308 66.6
Actinidia00103 Actinidia chinensis HOM05D005997 ORTHO05D008323 3.1e-112 409.1 286 70.6
Gohir.D01G072400 Gossypium hirsutum HOM05D005997 ORTHO05D008323 1.7e-110 403.3 308 65.9
Ciclev10009024m.g Citrus clementina HOM05D005997 ORTHO05D008323 8.4e-110 401.0 307 64.8
FAN21G1688 Fragaria x ananassa HOM05D005997 ORTHO05D008323 1.9e-109 399.8 304 65.8
RcHm_v2.0_Chr5g0042181 Rosa chinensis HOM05D005997 ORTHO05D008323 1.9e-109 399.8 292 67.8
Gorai.002G095400 Gossypium raimondii HOM05D005997 ORTHO05D008323 9.3e-109 397.5 307 65.5
Nitab4.5_0001160g0200 Nicotiana tabacum HOM05D005997 ORTHO05D008323 4.6e-108 395.2 302 68.5
TWI38G0893 Tripterygium wilfordii HOM05D005997 ORTHO05D008323 6.0e-108 394.8 305 65.6
TAR624G0829 Trochodendron aralioides HOM05D005997 ORTHO05D008323 1.0e-107 394.0 286 68.2
Sopen07g033400 Solanum pennellii HOM05D005997 ORTHO05D008323 1.8e-107 393.3 304 66.1
PGSC0003DMG400022292 Solanum tuberosum HOM05D005997 ORTHO05D008323 2.3e-107 392.9 301 66.8
RcHm_v2.0_Chr5g0042111 Rosa chinensis HOM05D005997 ORTHO05D008323 3.9e-107 392.1 292 66.1
Solyc07g065180.3 Solanum lycopersicum HOM05D005997 ORTHO05D008323 3.9e-107 392.1 304 66.1
Hma1.2p1_0036F.1_g022850 Hydrangea macrophylla HOM05D005997 ORTHO05D008323 5.1e-107 391.7 273 71.1
Gohir.A01G086200 Gossypium hirsutum HOM05D005997 ORTHO05D008323 6.7e-107 391.3 289 67.1
Prupe.4G230500 Prunus persica HOM05D005997 ORTHO05D008323 6.7e-107 391.3 308 65.3
Nitab4.5_0010102g0010 Nicotiana tabacum HOM05D005997 ORTHO05D008323 8.7e-107 391.0 302 65.9
CANSAT11G0206 Cannabis sativa HOM05D005997 ORTHO05D008323 1.1e-106 390.6 292 68.8
Eucgr.F03518 Eucalyptus grandis HOM05D005997 ORTHO05D008323 1.1e-106 390.6 249 77.1
GSVIVG01037764001 Vitis vinifera HOM05D005997 ORTHO05D008323 5.7e-106 388.3 301 66.4
Dinv40826 Davidia involucrata HOM05D005997 ORTHO05D008323 7.4e-106 387.9 282 68.8
CAN.G337.36 Capsicum annuum HOM05D005997 ORTHO05D008323 9.7e-106 387.5 279 69.2
Cc05_g14560 Coffea canephora HOM05D005997 ORTHO05D008323 1.3e-105 387.1 267 71.2
COL.COLO4_09766 Corchorus olitorius HOM05D005997 ORTHO05D008323 1.3e-105 387.1 309 63.4
MD11G1206400 Malus domestica HOM05D005997 ORTHO05D008323 2.2e-105 386.3 304 64.8
Duzib213G0008 Durio zibethinus HOM05D005997 ORTHO05D008323 2.8e-105 386.0 288 66.3
FAN25G0611 Fragaria x ananassa HOM05D005997 ORTHO05D008323 1.8e-104 383.3 329 60.8
Potri.008G180300 Populus trichocarpa HOM05D005997 ORTHO05D008323 4.1e-104 382.1 303 63.7
CsaV3_7G018710 Cucumis sativus L. HOM05D005997 ORTHO05D008323 2.6e-103 379.4 298 63.8
CiPaw.12G135200 Carya illinoinensis HOM05D005997 ORTHO05D008323 5.9e-103 378.3 219 82.6
Manes.03G134100 Manihot esculenta HOM05D005997 ORTHO05D008323 5.9e-103 378.3 292 64.7
Nn1g03269 Nelumbo nucifera HOM05D005997 ORTHO05D008323 5.9e-103 378.3 307 62.5
Sabra08G0137600 Salix brachista HOM05D005997 ORTHO05D008323 5.9e-103 378.3 286 65.0
Sed0012266 Sechium edule HOM05D005997 ORTHO05D008323 1.4e-101 373.6 305 62.0
Sc07g0002940 Simmondsia chinensis HOM05D005997 ORTHO05D008323 3.2e-101 372.5 291 64.3
ClCG09G021010 Citrullus lanatus HOM05D005997 ORTHO05D008323 7.2e-101 371.3 337 57.6
Rhsim06G0225700 Rhododendron simsii HOM05D005997 ORTHO05D008323 2.1e-100 369.8 307 63.5
SGA_v2.0_scaffold168G38522 Striga asiatica HOM05D005997 ORTHO05D008323 4.6e-100 368.6 229 75.5
FvH4_3g23860 Fragaria vesca HOM05D005997 ORTHO05D008323 1.0e-99 367.5 224 77.2
SalBow8G0955 Salvia bowleyana HOM05D005997 ORTHO05D008323 1.0e-99 367.5 234 76.1
Migut.M01687 Erythranthe guttata HOM05D005997 ORTHO05D008323 1.3e-99 367.1 295 64.4
AT1G50575 Arabidopsis thaliana HOM05D005997 ORTHO05D008323 3.9e-99 365.5 240 71.2
MSTRG.6975 Avicennia marina HOM05D005997 ORTHO05D008323 5.1e-99 365.2 256 70.7
Thhalv10011693m.g Eutrema salsugineum HOM05D005997 ORTHO05D008323 8.7e-99 364.4 247 70.4
PSO210G1255 Papaver somniferum HOM05D005997 ORTHO05D008323 2.5e-98 362.8 247 68.8
BraA06t23516Z Brassica rapa HOM05D005997 ORTHO05D008323 5.7e-98 361.7 241 72.2
Sp1g37390 Schrenkiella parvula HOM05D005997 ORTHO05D008323 5.7e-98 361.7 239 71.1
THA.LOC104826490 Tarenaya hassleriana HOM05D005997 ORTHO05D008323 5.7e-98 361.7 246 69.1
Psat5g171680 Pisum sativum HOM05D005997 ORTHO05D008323 7.4e-98 361.3 194 89.2
AL1G58220 Arabidopsis lyrata HOM05D005997 ORTHO05D008323 1.3e-97 360.5 244 71.3
A06p03040 Brassica napus HOM05D005997 ORTHO05D008323 6.3e-97 358.2 241 71.0
Carub.0001s3961 Capsella rubella HOM05D005997 ORTHO05D008323 6.3e-97 358.2 243 70.8
ECA236G3940 Erigeron canadensis HOM05D004336 ORTHO05D005367 6.3e-97 358.2 225 74.7
Aqoxy1G04030 Aquilegia oxysepala HOM05D005997 ORTHO05D008323 1.1e-96 357.5 268 65.7
CARHR040570 Cardamine hirsuta HOM05D005997 ORTHO05D008323 1.1e-96 357.5 246 69.9
BcaC08g43226 Brassica carinata HOM05D005997 ORTHO05D008323 1.8e-96 356.7 234 70.5
C06p05740 Brassica napus HOM05D005997 ORTHO05D008323 1.8e-96 356.7 234 70.5
BolC6t35684H Brassica oleracea HOM05D005997 ORTHO05D008323 1.8e-96 356.7 234 70.5
DCAR_022603 Daucus carota HOM05D005997 ORTHO05D008323 2.4e-96 356.3 247 69.6
BcaB07g33491 Brassica carinata HOM05D005997 ORTHO05D008323 3.1e-96 355.9 236 71.6
Os03g0587100 Oryza sativa ssp. japonica HOM05D005997 ORTHO05D008323 1.2e-95 354.0 216 76.4
Aa31LG10G3760 Aethionema arabicum HOM05D005997 ORTHO05D008323 1.0e-94 350.9 225 73.3
Lj1C884G3 Lonicera japonica HOM05D005997 ORTHO05D008323 3.8e-94 349.0 307 60.9
SEGI_04256 Sequoiadendron giganteum HOM05D005997 ORTHO05D008323 5.0e-94 348.6 242 69.4
Oeu019619.1 Olea europaea HOM05D005997 ORTHO05D008323 8.5e-94 347.8 326 59.2
MBI16_g42314_MAGBIO Magnolia biondii HOM05D005997 ORTHO05D008323 2.5e-93 346.3 274 64.2
PGR044G2356 Punica granatum HOM05D005997 ORTHO05D008323 4.2e-93 345.5 213 77.0
Haze_09774 Corylus avellana HOM05D005997 ORTHO05D008323 7.2e-93 344.7 310 60.3
Lsat_1_v5_gn_7_114661 Lactuca sativa HOM05D005997 ORTHO05D008323 1.6e-92 343.6 270 64.1
Zm00001eb049320 Zea mays HOM05D005997 ORTHO05D008323 2.3e-91 339.7 219 71.7
QL08p008622 Quercus lobata HOM05D005997 ORTHO05D008323 1.5e-90 337.0 336 56.2
ATR0712G169 Amborella trichopoda HOM05D005997 ORTHO05D008323 3.1e-88 329.3 220 69.5
EL10Ac4g07628 Beta vulgaris HOM05D005997 ORTHO05D008323 1.5e-87 327.0 254 63.0
unitig_899.g15278 Utricularia gibba HOM05D005997 ORTHO05D008323 9.4e-85 317.8 192 78.6
AagrBONN_evm.TU.Sc2ySwM_362.871 Anthoceros agrestis HOM05D005997 ORTHO05D008323 2.3e-83 313.2 223 65.9
MELO3C024895.2 Cucumis melo HOM05D005997 ORTHO05D008323 2.6e-82 309.7 243 64.2
Cpa.g.sc12.206 Carica papaya HOM05D005997 ORTHO05D008323 3.3e-82 309.3 266 59.4
vmacro11568 Vaccinium macrocarpon HOM05D005997 ORTHO05D008323 5.7e-82 308.5 260 61.5
Atru.BG.132.p Acer truncatum HOM05D005997 ORTHO05D008323 2.2e-81 306.6 171 84.2
Peaxi162Scf00047g00845 Petunia axillaris HOM05D005997 ORTHO05D008323 3.1e-80 302.8 235 66.0
PGR031G3624 Punica granatum HOM05D005997 ORTHO05D008323 1.2e-79 300.8 186 76.3
SMO196G0283 Selaginella moellendorffii HOM05D005997 ORTHO05D008323 2.0e-79 300.1 217 64.1
Pp3c14_23810 Physcomitrium patens HOM05D005997 ORTHO05D008323 6.1e-76 288.5 227 59.9
CDE07G1873 Ceratophyllum demersum HOM05D005997 ORTHO05D008323 6.7e-75 285.0 196 70.4
PSO302G0218 Papaver somniferum HOM05D005997 ORTHO05D008323 2.0e-74 283.5 286 53.1
Glyma.18G084600 Glycine max HOM05D005997 ORTHO05D008323 4.4e-74 282.3 248 62.9
AUR62040674 Chenopodium quinoa HOM05D005997 ORTHO05D008323 5.7e-74 282.0 181 71.8
AUR62015935 Chenopodium quinoa HOM05D005997 ORTHO05D008323 2.2e-73 280.0 173 74.6
arahy.Tifrunner.gnm1.ann1.D6FGWZ Arachis hypogaea HOM05D005997 ORTHO05D008323 1.8e-59 233.8 150 77.3
Dinv10299 Davidia involucrata HOM05D005997 ORTHO05D008323 3.3e-53 213.0 178 60.1
MCO09G728 Micromonas commoda HOM05D004293 ORTHO05D005044 5.8e-50 202.2 227 44.9
CSS0016170 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 2.2e-49 200.3 131 74.8
MCO11G065 Micromonas commoda HOM05D004293 ORTHO05D005044 3.7e-49 199.5 220 45.5
CSS0047434 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 6.4e-49 198.7 131 74.0
HPP92_007350 Vanilla planifolia HOM05D005997 ORTHO05D008323 2.7e-47 193.4 162 57.4
PRCOL_00002636 Prasinoderma coloniale HOM05D005997 ORTHO05D008323 2.1e-44 183.7 222 46.8
Cfa020073 Carpinus fangiana HOM05D005997 ORTHO05D008323 4.7e-44 182.6 122 76.2
Cre01.g039850 Chlamydomonas reinhardtii HOM05D005997 ORTHO05D005044 8.0e-44 181.8 221 42.5
CSS0025804 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 8.9e-43 178.3 179 53.6
PRCOL_00000116 Prasinoderma coloniale HOM05D005997 ORTHO05D008323 1.1e-40 171.4 222 41.4
Atru.chr7.2230 Acer truncatum HOM05D005997 ORTHO05D008323 3.3e-37 159.8 97 76.3
Atru.chr7.2351 Acer truncatum HOM05D005997 ORTHO05D008323 3.3e-37 159.8 97 76.3
Aqoxy1G04027 Aquilegia oxysepala HOM05D005997 ORTHO05D008323 1.8e-35 154.1 106 67.9
Prupe.4G230300 Prunus persica HOM05D005997 ORTHO05D008323 5.1e-30 136.0 119 60.5
QL08p004262 Quercus lobata HOM05D005997 ORTHO05D008323 2.1e-28 130.6 144 51.4
QL08p058329 Quercus lobata HOM05D005997 ORTHO05D008323 2.1e-28 130.6 144 51.4
QL05p025044 Quercus lobata HOM05D005997 ORTHO05D008323 3.5e-23 113.2 165 43.6
SEGI_34153 Sequoiadendron giganteum HOM05D005997 ORTHO05D008323 3.9e-22 109.8 161 41.6
CSS0048391 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 6.6e-22 109.0 79 67.1
CSS0044071 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 6.4e-17 92.4 56 76.8
CSS0025137 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 2.3e-14 84.0 50 78.0
QL08p004281 Quercus lobata HOM05D005997 ORTHO05D007626 5.1e-14 82.8 159 36.5
QL11p054366 Quercus lobata HOM05D005997 ORTHO05D338109 8.7e-14 82.0 123 44.7
QL08p004325 Quercus lobata HOM05D005997 ORTHO05D337094 1.9e-13 80.9 112 46.4
QL08p058354 Quercus lobata HOM05D005997 ORTHO05D007626 4.8e-12 76.3 122 40.2
Rhsim03G0100400 Rhododendron simsii HOM05D005997 ORTHO05D338268 8.1e-12 75.5 91 47.3
Lsat_1_v5_gn_8_39280 Lactuca sativa HOM05D005997 ORTHO05D230963 2.2e-09 67.4 48 64.6
arahy.Tifrunner.gnm1.ann1.U3B0HF Arachis hypogaea HOM05D003842 ORTHO05D026908 2.1e-07 60.8 36 83.3
Dinv12329 Davidia involucrata HOM05D000450 ORTHO05D000327 4.6e-07 59.7 179 29.6
AUR62035741 Chenopodium quinoa HOM05D000450 ORTHO05D000327 7.9e-07 58.9 208 26.4
BcaB03g11784 Brassica carinata HOM05D000450 ORTHO05D000327 1.0e-06 58.5 226 28.8
arahy.Tifrunner.gnm1.ann1.EBVM73 Arachis hypogaea HOM05D005997 ORTHO05D004267 6.7e-06 55.8 28 85.7
CANSAT25G1010 Cannabis sativa HOM05D000450 ORTHO05D000327 8.7e-06 55.5 217 26.3
FAN05G0193 Fragaria x ananassa HOM05D000450 ORTHO05D000327 8.7e-06 55.5 203 30.5


User provided reference genes

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