Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G19065 Trifolium pratense HOM05D003477 ORTHO05D004043 4.6e-46 187.6 97 100.0
Ca_11060_v3 Cicer arietinum L. HOM05D003477 ORTHO05D004043 4.6e-22 107.8 68 82.4
Medtr1g107085 Medicago truncatula HOM05D003477 ORTHO05D004043 9.0e-18 93.6 85 61.2
Psat6g216680 Pisum sativum HOM05D003477 ORTHO05D004043 5.8e-17 90.9 61 73.8
Gohir.A03G185500 Gossypium hirsutum HOM05D003477 ORTHO05D004043 1.0e-13 80.1 49 75.5
Thecc.02G111100 Theobroma cacao HOM05D003477 ORTHO05D004043 1.3e-13 79.7 83 56.6
Lj5g0009419 Lotus japonicus HOM05D003477 ORTHO05D004043 2.3e-13 79.0 85 55.3
MD10G1099700 Malus domestica HOM05D003477 ORTHO05D004043 2.3e-13 79.0 65 61.5
Gohir.D02G206836 Gossypium hirsutum HOM05D003477 ORTHO05D004043 3.0e-13 78.6 49 73.5
arahy.Tifrunner.gnm1.ann1.S3TCSS Arachis hypogaea HOM05D003477 ORTHO05D004043 3.9e-13 78.2 85 55.3
Lalb_Chr21g0308261 Lupinus albus HOM05D003477 ORTHO05D004043 3.9e-13 78.2 56 75.0
Phvul.007G041500 Phaseolus vulgaris HOM05D003477 ORTHO05D004043 8.7e-13 77.0 85 52.9
arahy.Tifrunner.gnm1.ann1.K085P0 Arachis hypogaea HOM05D003477 ORTHO05D004043 1.5e-12 76.3 85 56.5
Gohir.A12G021300 Gossypium hirsutum HOM05D003477 ORTHO05D004043 1.9e-12 75.9 49 69.4
Gohir.D12G021600 Gossypium hirsutum HOM05D003477 ORTHO05D004043 3.3e-12 75.1 86 51.2
Lalb_Chr02g0145231 Lupinus albus HOM05D003477 ORTHO05D004043 5.7e-12 74.3 61 67.2
VMungo0720G2427 Vigna mungo HOM05D003477 ORTHO05D004043 5.7e-12 74.3 85 52.9
TWI79G1417 Tripterygium wilfordii HOM05D003477 ORTHO05D004043 7.4e-12 73.9 53 67.9
GSVIVG01037899001 Vitis vinifera HOM05D003477 ORTHO05D004043 3.7e-11 71.6 51 66.7
Prupe.8G137400 Prunus persica HOM05D003477 ORTHO05D004043 6.3e-11 70.9 84 51.2
Duzib132G0501 Durio zibethinus HOM05D003477 ORTHO05D004043 8.2e-11 70.5 49 69.4
Glyma.10G260750 Glycine max HOM05D003511 ORTHO05D004403 8.2e-11 70.5 49 69.4
Cpa.g.sc106.115 Carica papaya HOM05D003477 ORTHO05D004043 2.4e-10 68.9 49 69.4
Dinv42204 Davidia involucrata HOM05D003477 ORTHO05D004043 2.4e-10 68.9 65 63.1
Sp7g32050 Schrenkiella parvula HOM05D003477 ORTHO05D004043 2.4e-10 68.9 51 72.5
TAR381G0852 Trochodendron aralioides HOM05D003477 ORTHO05D004043 2.4e-10 68.9 54 64.8
CSS0007946 Camellia sinensis var. sinensis HOM05D003477 ORTHO05D004043 5.3e-10 67.8 51 68.6
CSS0046932 Camellia sinensis var. sinensis HOM05D003477 ORTHO05D004043 5.3e-10 67.8 51 68.6
Gorai.005G234400 Gossypium raimondii HOM05D003477 ORTHO05D004043 5.3e-10 67.8 42 71.4
TAR625G0309 Trochodendron aralioides HOM05D003477 ORTHO05D004043 1.2e-09 66.6 44 72.7
Solyc01g107450.4 Solanum lycopersicum HOM05D003477 ORTHO05D004043 2.6e-09 65.5 51 62.7
Sopen01g049690 Solanum pennellii HOM05D003477 ORTHO05D004043 2.6e-09 65.5 51 62.7
Duzib248G0862 Durio zibethinus HOM05D003477 ORTHO05D004043 4.5e-09 64.7 67 56.7
Sc08g0001310 Simmondsia chinensis HOM05D003477 ORTHO05D004043 4.5e-09 64.7 51 58.8
Gorai.008G021900 Gossypium raimondii HOM05D003477 ORTHO05D004043 7.6e-09 63.9 76 48.7
Duzib248G0529 Durio zibethinus HOM05D003477 ORTHO05D004043 1.0e-08 63.5 49 67.3
AL7G17010 Arabidopsis lyrata HOM05D003477 ORTHO05D004043 2.2e-08 62.4 51 64.7
Sed0021400 Sechium edule HOM05D003477 ORTHO05D004043 2.2e-08 62.4 59 55.9
Duzib052G0507 Durio zibethinus HOM05D003477 ORTHO05D004043 2.9e-08 62.0 76 50.0
Hund16371 Selenicereus undatus HOM05D003477 ORTHO05D004043 2.9e-08 62.0 75 53.3
ATR0315G039 Amborella trichopoda HOM05D003477 ORTHO05D004043 3.8e-08 61.6 46 60.9
Nn1g04659 Nelumbo nucifera HOM05D003477 ORTHO05D004043 3.8e-08 61.6 66 51.5
Carub.0007s0610 Capsella rubella HOM05D003477 ORTHO05D004043 5.0e-08 61.2 51 62.7
Eucgr.H02262 Eucalyptus grandis HOM05D003477 ORTHO05D004043 5.0e-08 61.2 50 62.0
Nn5g30458 Nelumbo nucifera HOM05D003477 ORTHO05D004043 5.0e-08 61.2 41 73.2
Hma1.2p1_1023F.1_g249010 Hydrangea macrophylla HOM05D003477 ORTHO05D004043 6.5e-08 60.8 65 58.5
MBI04_g11440_MAGBIO Magnolia biondii HOM05D003477 ORTHO05D004043 6.5e-08 60.8 42 66.7
TWI31G0442 Tripterygium wilfordii HOM05D003477 ORTHO05D004043 6.5e-08 60.8 47 59.6
Aa31LG2G16840 Aethionema arabicum HOM05D003477 ORTHO05D004043 8.5e-08 60.5 42 69.0
Dinv15774 Davidia involucrata HOM05D003477 ORTHO05D004043 8.5e-08 60.5 84 45.2
arahy.Tifrunner.gnm1.ann1.VE84TY Arachis hypogaea HOM05D003477 ORTHO05D004043 1.1e-07 60.1 63 50.8
TAR376G0403 Trochodendron aralioides HOM05D003477 ORTHO05D004043 1.4e-07 59.7 58 56.9
Oeu029533.3 Olea europaea HOM05D003477 ORTHO05D004043 1.9e-07 59.3 67 49.3
Aa31LG8G13000 Aethionema arabicum HOM05D003477 ORTHO05D004043 2.5e-07 58.9 44 65.9
arahy.Tifrunner.gnm1.ann1.T63M72 Arachis hypogaea HOM05D003477 ORTHO05D004043 2.5e-07 58.9 65 47.7
ClCG05G010360 Citrullus lanatus HOM05D003477 ORTHO05D004043 2.5e-07 58.9 60 55.0
QL06p040030 Quercus lobata HOM05D003477 ORTHO05D004043 2.5e-07 58.9 56 53.6
vmacro19455 Vaccinium macrocarpon HOM05D003477 ORTHO05D004043 2.5e-07 58.9 58 56.9
CARHR242520 Cardamine hirsuta HOM05D003477 ORTHO05D004043 3.2e-07 58.5 51 62.7
CiPaw.05G013300 Carya illinoinensis HOM05D003477 ORTHO05D004043 3.2e-07 58.5 49 61.2
ClCG02G006540 Citrullus lanatus HOM05D003477 ORTHO05D004043 3.2e-07 58.5 42 61.9
MELO3C018498.2 Cucumis melo HOM05D003477 ORTHO05D004043 3.2e-07 58.5 42 61.9
CsaV3_7G008070 Cucumis sativus L. HOM05D010572 ORTHO05D012753 3.2e-07 58.5 42 61.9
QL11p032673 Quercus lobata HOM05D003477 ORTHO05D004043 3.2e-07 58.5 88 44.3
Sed0004332 Sechium edule HOM05D003477 ORTHO05D004043 3.2e-07 58.5 67 52.2
Sed0009886 Sechium edule HOM05D003477 ORTHO05D004043 3.2e-07 58.5 57 52.6
Sc16g0001450 Simmondsia chinensis HOM05D003477 ORTHO05D004043 3.2e-07 58.5 44 61.4
Nitab4.5_0003699g0030 Nicotiana tabacum HOM05D003477 ORTHO05D004043 4.2e-07 58.2 48 66.7
Eucgr.I01090 Eucalyptus grandis HOM05D003477 ORTHO05D004043 5.5e-07 57.8 65 52.3
Rhsim05G0089200 Rhododendron simsii HOM05D003477 ORTHO05D004043 5.5e-07 57.8 57 56.1
BolC7t41282H Brassica oleracea HOM05D003477 ORTHO05D004043 7.2e-07 57.4 54 59.3
BraA07t28337Z Brassica rapa HOM05D003477 ORTHO05D004043 7.2e-07 57.4 54 59.3
FAN20G0459 Fragaria x ananassa HOM05D003477 ORTHO05D004043 7.2e-07 57.4 83 45.8
Oeu013760.1 Olea europaea HOM05D003477 ORTHO05D004043 7.2e-07 57.4 66 50.0
PSO210G4486 Papaver somniferum HOM05D003477 ORTHO05D004043 7.2e-07 57.4 44 61.4
Phvul.002G014500 Phaseolus vulgaris HOM05D003477 ORTHO05D004043 7.2e-07 57.4 64 53.1
Actinidia16453 Actinidia chinensis HOM05D003477 ORTHO05D004043 9.3e-07 57.0 67 53.7
Actinidia21247 Actinidia chinensis HOM05D003477 ORTHO05D004043 9.3e-07 57.0 67 53.7
Carub.0003s2895 Capsella rubella HOM05D003477 ORTHO05D004043 9.3e-07 57.0 58 56.9
Glyma.20G130500 Glycine max HOM05D003477 ORTHO05D004043 9.3e-07 57.0 88 46.6
MD02G1179900 Malus domestica HOM05D003477 ORTHO05D004043 9.3e-07 57.0 50 60.0
Sed0015852 Sechium edule HOM05D003477 ORTHO05D004043 9.3e-07 57.0 58 55.2
Actinidia27974 Actinidia chinensis HOM05D003477 ORTHO05D004043 1.2e-06 56.6 38 65.8
FAN24G0602 Fragaria x ananassa HOM05D003477 ORTHO05D004043 1.2e-06 56.6 83 45.8
CAN.G606.19 Capsicum annuum HOM05D003477 ORTHO05D004043 1.6e-06 56.2 44 61.4
Thhalv10026653m.g Eutrema salsugineum HOM05D003477 ORTHO05D004043 1.6e-06 56.2 44 63.6
FvH4_2g04800 Fragaria vesca HOM05D003477 ORTHO05D004043 1.6e-06 56.2 81 45.7
Lj2g0006602 Lotus japonicus HOM05D003477 ORTHO05D004043 1.6e-06 56.2 44 63.6
SGA_v2.0_scaffold32G13034 Striga asiatica HOM05D003477 ORTHO05D004043 1.6e-06 56.2 66 48.5
Actinidia34393 Actinidia chinensis HOM05D003477 ORTHO05D004043 2.1e-06 55.8 41 65.9
AL3G46800 Arabidopsis lyrata HOM05D003477 ORTHO05D004043 2.1e-06 55.8 49 63.3
AT2G15000 Arabidopsis thaliana HOM05D003477 ORTHO05D004043 2.1e-06 55.8 49 63.3
AT4G34265 Arabidopsis thaliana HOM05D003477 ORTHO05D004043 2.1e-06 55.8 44 61.4
EL10Ac6g15680 Beta vulgaris HOM05D003477 ORTHO05D004043 2.1e-06 55.8 44 59.1
A07p05410 Brassica napus HOM05D003477 ORTHO05D004043 2.1e-06 55.8 50 60.0
Thhalv10022939m.g Eutrema salsugineum HOM05D003477 ORTHO05D004043 2.1e-06 55.8 49 63.3
PSO675G8803 Papaver somniferum HOM05D003477 ORTHO05D004043 2.1e-06 55.8 58 53.4
RcHm_v2.0_Chr6g0254531 Rosa chinensis HOM05D003477 ORTHO05D004043 2.1e-06 55.8 81 46.9
Sp3g28420 Schrenkiella parvula HOM05D003477 ORTHO05D004043 2.1e-06 55.8 49 63.3
Actinidia00402 Actinidia chinensis HOM05D003477 ORTHO05D004043 2.7e-06 55.5 41 68.3
Cc07_g06600 Coffea canephora HOM05D003477 ORTHO05D004043 2.7e-06 55.5 42 64.3
vmacro01991 Vaccinium macrocarpon HOM05D003477 ORTHO05D004043 2.7e-06 55.5 58 55.2
BcaC06g36034 Brassica carinata HOM05D003477 ORTHO05D004043 3.6e-06 55.1 49 61.2
BcaNung04163 Brassica carinata HOM05D003477 ORTHO05D004043 3.6e-06 55.1 44 61.4
A01p04150 Brassica napus HOM05D003477 ORTHO05D004043 3.6e-06 55.1 44 61.4
C07p08710 Brassica napus HOM05D003477 ORTHO05D004043 3.6e-06 55.1 48 62.5
BolC1t00438H Brassica oleracea HOM05D003477 ORTHO05D004043 3.6e-06 55.1 44 61.4
BraA01t00404Z Brassica rapa HOM05D003477 ORTHO05D004043 3.6e-06 55.1 44 61.4
CARHR105430 Cardamine hirsuta HOM05D003477 ORTHO05D004043 3.6e-06 55.1 49 63.3
HanXRQChr03g0068771 Helianthus annuus HOM05D003477 ORTHO05D004043 3.6e-06 55.1 48 62.5
Rhsim11G0157900 Rhododendron simsii HOM05D003477 ORTHO05D004043 3.6e-06 55.1 42 61.9
PSO541G5514 Papaver somniferum HOM05D003477 ORTHO05D004043 4.6e-06 54.7 41 63.4
Prupe.6G226300 Prunus persica HOM05D003477 ORTHO05D004043 4.6e-06 54.7 50 58.0
PGSC0003DMG400025859 Solanum tuberosum HOM05D003477 ORTHO05D004043 4.6e-06 54.7 44 59.1
SGA_v2.0_scaffold225G42992 Striga asiatica HOM05D003477 ORTHO05D004043 4.6e-06 54.7 85 41.2
Ca_24733_v3 Cicer arietinum L. HOM05D002634 ORTHO05D003100 6.1e-06 54.3 44 59.1
BcaB08g34577 Brassica carinata HOM05D003477 ORTHO05D004043 7.9e-06 53.9 42 64.3
A03p45360 Brassica napus HOM05D003477 ORTHO05D004043 7.9e-06 53.9 49 61.2
C01p04520 Brassica napus HOM05D003477 ORTHO05D004043 7.9e-06 53.9 44 59.1
BraA03t13668Z Brassica rapa HOM05D003477 ORTHO05D004043 7.9e-06 53.9 49 61.2
Duzib187G1405 Durio zibethinus HOM05D007429 ORTHO05D003505 7.9e-06 53.9 46 56.5
Migut.B00399 Erythranthe guttata HOM05D003477 ORTHO05D004043 7.9e-06 53.9 41 65.9
FAN15G1392 Fragaria x ananassa HOM05D003477 ORTHO05D004043 7.9e-06 53.9 64 48.4
Lsat_1_v5_gn_2_85381 Lactuca sativa HOM05D003477 ORTHO05D004043 7.9e-06 53.9 36 72.2
VMungo1215G1682 Vigna mungo HOM05D002634 ORTHO05D003100 7.9e-06 53.9 38 68.4


User provided reference genes

Program Settings