Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G19056 Trifolium pratense HOM05D004245 ORTHO05D004783 1.4e-78 296.2 151 100.0
Medtr3g063110 Medicago truncatula HOM05D004245 ORTHO05D004783 8.1e-74 280.4 151 93.4
Psat5g146640 Pisum sativum HOM05D004245 ORTHO05D004783 1.4e-70 269.6 152 90.1
TPR.G37404 Trifolium pratense HOM05D004245 ORTHO05D004783 9.3e-70 266.9 151 88.7
Ca_15096_v3 Cicer arietinum L. HOM05D004245 ORTHO05D004783 6.0e-69 264.2 151 88.1
CARHR155580 Cardamine hirsuta HOM05D004245 ORTHO05D004783 3.3e-67 258.5 148 88.5
Sp5g14800 Schrenkiella parvula HOM05D004245 ORTHO05D004783 1.6e-66 256.1 143 88.8
Carub.0005s1316 Capsella rubella HOM05D004245 ORTHO05D004783 3.6e-66 255.0 148 85.1
Thhalv10011147m.g Eutrema salsugineum HOM05D004245 ORTHO05D004783 3.6e-66 255.0 148 86.5
PSO832G4589 Papaver somniferum HOM05D004245 ORTHO05D004783 1.4e-65 253.1 148 87.8
Sopen01g041550 Solanum pennellii HOM05D004245 ORTHO05D004783 1.4e-65 253.1 148 86.5
PGSC0003DMG400022502 Solanum tuberosum HOM05D004245 ORTHO05D004783 1.4e-65 253.1 148 86.5
C03p71110 Brassica napus HOM05D004245 ORTHO05D004783 1.8e-65 252.7 151 82.1
BolC3t19396H Brassica oleracea HOM05D004245 ORTHO05D004783 1.8e-65 252.7 151 82.1
AL5G26160 Arabidopsis lyrata HOM05D004245 ORTHO05D004783 3.1e-65 251.9 143 88.1
AT3G46940 Arabidopsis thaliana HOM05D004245 ORTHO05D004783 3.1e-65 251.9 149 85.2
BraA06t25141Z Brassica rapa HOM05D004245 ORTHO05D004783 4.0e-65 251.5 151 81.5
Glyma.18G048400 Glycine max HOM05D004245 ORTHO05D004783 4.0e-65 251.5 151 80.8
A06p20620 Brassica napus HOM05D004245 ORTHO05D004783 5.3e-65 251.1 151 81.5
RcHm_v2.0_Chr6g0300871 Rosa chinensis HOM05D004245 ORTHO05D004783 5.3e-65 251.1 149 83.2
Lj4A41T61 Lonicera japonica HOM05D004245 ORTHO05D004783 1.2e-64 250.0 142 87.3
MSTRG.1283 Avicennia marina HOM05D004245 ORTHO05D004783 2.6e-64 248.8 142 83.1
Ciclev10002428m.g Citrus clementina HOM05D004245 ORTHO05D004783 2.6e-64 248.8 150 82.7
AUR62027309 Chenopodium quinoa HOM05D004245 ORTHO05D004783 3.4e-64 248.4 141 87.2
EL10Ac5g11904 Beta vulgaris HOM05D004245 ORTHO05D004783 4.5e-64 248.1 149 83.9
Oeu029863.1 Olea europaea HOM05D004245 ORTHO05D004783 4.5e-64 248.1 141 85.8
Phvul.008G243100 Phaseolus vulgaris HOM05D004245 ORTHO05D004783 4.5e-64 248.1 143 83.9
QL02p008410 Quercus lobata HOM05D004245 ORTHO05D004783 5.8e-64 247.7 140 85.7
THA.LOC104813208 Tarenaya hassleriana HOM05D004245 ORTHO05D004783 5.8e-64 247.7 143 86.0
CANSAT11G0204 Cannabis sativa HOM05D004245 ORTHO05D004783 7.6e-64 247.3 143 85.3
FvH4_2g39911 Fragaria vesca HOM05D004245 ORTHO05D004783 1.7e-63 246.1 148 83.8
Lalb_Chr10g0103901 Lupinus albus HOM05D004245 ORTHO05D004783 1.7e-63 246.1 149 83.2
Potri.002G261900 Populus trichocarpa HOM05D004245 ORTHO05D004783 1.7e-63 246.1 139 87.1
Aa31LG4G15890 Aethionema arabicum HOM05D004245 ORTHO05D004783 2.2e-63 245.7 143 86.0
Eucgr.F01560 Eucalyptus grandis HOM05D004245 ORTHO05D004783 2.2e-63 245.7 153 80.4
Thecc.08G025300 Theobroma cacao HOM05D004245 ORTHO05D004783 2.2e-63 245.7 146 83.6
HanXRQChr05g0151891 Helianthus annuus HOM05D004245 ORTHO05D004783 2.9e-63 245.4 149 81.2
CAN.G134.178 Capsicum annuum HOM05D004245 ORTHO05D004783 4.9e-63 244.6 149 83.9
QL02p008145 Quercus lobata HOM05D004245 ORTHO05D004783 4.9e-63 244.6 140 85.0
Cc10_g03000 Coffea canephora HOM05D004245 ORTHO05D004783 6.4e-63 244.2 140 85.0
Dinv36073 Davidia involucrata HOM05D004245 ORTHO05D004783 6.4e-63 244.2 139 84.9
Oeu049959.1 Olea europaea HOM05D004245 ORTHO05D004783 6.4e-63 244.2 141 84.4
Oeu049960.1 Olea europaea HOM05D004245 ORTHO05D004783 6.4e-63 244.2 141 84.4
CiPaw.15G077400 Carya illinoinensis HOM05D004245 ORTHO05D004783 8.4e-63 243.8 141 83.7
Aqoxy2G01756 Aquilegia oxysepala HOM05D004245 ORTHO05D004783 1.1e-62 243.4 139 86.3
Oeu056187.1 Olea europaea HOM05D004245 ORTHO05D004783 1.1e-62 243.4 141 85.8
Atru.chr13.494 Acer truncatum HOM05D004245 ORTHO05D004783 1.4e-62 243.0 141 83.0
Cpa.g.sc36.67 Carica papaya HOM05D004245 ORTHO05D004783 1.4e-62 243.0 142 84.5
Gohir.D05G198000 Gossypium hirsutum HOM05D004245 ORTHO05D004783 1.4e-62 243.0 141 84.4
TAR365G0431 Trochodendron aralioides HOM05D004245 ORTHO05D004783 1.9e-62 242.7 152 81.6
Cc00_g32610 Coffea canephora HOM05D004245 ORTHO05D004783 2.4e-62 242.3 140 87.9
COL.COLO4_26330 Corchorus olitorius HOM05D004245 ORTHO05D004783 2.4e-62 242.3 141 84.4
Gohir.A05G194800 Gossypium hirsutum HOM05D004245 ORTHO05D004783 2.4e-62 242.3 141 84.4
TAR381G1372 Trochodendron aralioides HOM05D004245 ORTHO05D004783 2.4e-62 242.3 139 86.3
Glyma.14G207800 Glycine max HOM05D004245 ORTHO05D004783 3.2e-62 241.9 150 82.0
Gorai.009G203100 Gossypium raimondii HOM05D004245 ORTHO05D004783 3.2e-62 241.9 141 83.7
Sc02g0006240 Simmondsia chinensis HOM05D004245 ORTHO05D004783 3.2e-62 241.9 146 82.9
MSTRG.22299 Avicennia marina HOM05D004245 ORTHO05D004783 4.2e-62 241.5 140 84.3
Nn1g05030 Nelumbo nucifera HOM05D004245 ORTHO05D004783 4.2e-62 241.5 142 82.4
Sopen01g043550 Solanum pennellii HOM05D004245 ORTHO05D004783 4.2e-62 241.5 140 83.6
DCAR_020361 Daucus carota HOM05D004245 ORTHO05D004783 5.4e-62 241.1 139 84.2
ECA246G2445 Erigeron canadensis HOM05D004245 ORTHO05D004783 5.4e-62 241.1 143 83.9
HanXRQChr08g0223611 Helianthus annuus HOM05D004245 ORTHO05D004783 5.4e-62 241.1 138 85.5
MD15G1031300 Malus domestica HOM05D004245 ORTHO05D004783 5.4e-62 241.1 150 82.0
PGSC0003DMG400024725 Solanum tuberosum HOM05D004245 ORTHO05D004783 7.1e-62 240.7 140 82.9
TWI56G0048 Tripterygium wilfordii HOM05D004245 ORTHO05D004783 9.3e-62 240.4 138 85.5
GSVIVG01009696001 Vitis vinifera HOM05D004245 ORTHO05D004783 9.3e-62 240.4 141 83.7
Ah.12g056070 Amaranthus hybridus HOM05D004245 ORTHO05D004783 1.2e-61 240.0 141 85.8
AUR62007424 Chenopodium quinoa HOM05D004245 ORTHO05D004783 1.2e-61 240.0 135 88.1
Duzib116G0455 Durio zibethinus HOM05D004245 ORTHO05D004783 1.2e-61 240.0 141 84.4
Lalb_Chr17g0345751 Lupinus albus HOM05D004245 ORTHO05D004783 1.6e-61 239.6 151 80.8
Solyc01g100030.5.1 Solanum lycopersicum HOM05D004245 ORTHO05D004783 1.6e-61 239.6 140 82.1
Manes.05G161000 Manihot esculenta HOM05D004245 ORTHO05D004783 2.1e-61 239.2 141 82.3
Manes.18G027901 Manihot esculenta HOM05D004245 ORTHO05D004783 2.1e-61 239.2 138 82.6
MELO3C010935.2 Cucumis melo HOM05D004245 ORTHO05D004783 2.7e-61 238.8 143 81.8
Prupe.1G380600 Prunus persica HOM05D004245 ORTHO05D004783 2.7e-61 238.8 150 81.3
TWI36G0248 Tripterygium wilfordii HOM05D004245 ORTHO05D004783 6.0e-61 237.7 139 84.9
GSVIVG01037336001 Vitis vinifera HOM05D004245 ORTHO05D004783 6.0e-61 237.7 141 83.7
Ciclev10009684m.g Citrus clementina HOM05D004245 ORTHO05D004783 7.9e-61 237.3 150 80.0
ClCG08G015180 Citrullus lanatus HOM05D004245 ORTHO05D004783 1.8e-60 236.1 143 81.1
CsaV3_2G028630 Cucumis sativus L. HOM05D004245 ORTHO05D004783 1.8e-60 236.1 139 82.7
Nn5g29570 Nelumbo nucifera HOM05D004245 ORTHO05D004783 1.8e-60 236.1 139 83.5
Atru.chr13.1763 Acer truncatum HOM05D004245 ORTHO05D004783 2.3e-60 235.7 141 82.3
VMungo0647G1970 Vigna mungo HOM05D004245 ORTHO05D004783 2.3e-60 235.7 141 81.6
CAN.G1273.28 Capsicum annuum HOM05D004245 ORTHO05D004783 3.0e-60 235.3 140 80.0
MD08G1034400 Malus domestica HOM05D004245 ORTHO05D004783 5.1e-60 234.6 149 79.9
PGR031G3519 Punica granatum HOM05D004245 ORTHO05D004783 5.1e-60 234.6 153 78.4
TWI12G0235 Tripterygium wilfordii HOM05D004245 ORTHO05D004783 5.1e-60 234.6 138 83.3
Actinidia29827 Actinidia chinensis HOM05D004245 ORTHO05D004783 6.7e-60 234.2 140 79.3
PSO591G0217 Papaver somniferum HOM05D004245 ORTHO05D004783 6.7e-60 234.2 148 83.1
Actinidia22552 Actinidia chinensis HOM05D004245 ORTHO05D004783 2.5e-59 232.3 139 81.3
Duzib093G0228 Durio zibethinus HOM05D004245 ORTHO05D004783 3.3e-59 231.9 139 82.0
MBI16_g37698_MAGBIO Magnolia biondii HOM05D004245 ORTHO05D004783 3.3e-59 231.9 154 77.9
Actinidia38010 Actinidia chinensis HOM05D004245 ORTHO05D004783 4.3e-59 231.5 140 79.3
MBI16_g37752_MAGBIO Magnolia biondii HOM05D004245 ORTHO05D004783 7.4e-59 230.7 139 82.0
Sabra04G0142000 Salix brachista HOM05D004298 ORTHO05D006236 9.6e-59 230.3 173 68.2
CDE12G0639 Ceratophyllum demersum HOM05D004245 ORTHO05D004783 2.8e-58 228.8 139 79.1
CDE04G3793 Ceratophyllum demersum HOM05D004245 ORTHO05D004783 3.6e-58 228.4 142 78.2
Zm00001eb052270 Zea mays HOM05D004245 ORTHO05D004783 4.8e-58 228.0 144 79.2
HPP92_000905 Vanilla planifolia HOM05D004245 ORTHO05D004783 6.2e-58 227.6 139 80.6
SEGI_17618 Sequoiadendron giganteum HOM05D004245 ORTHO05D004783 8.1e-58 227.3 147 76.9
Mapoly0133s0010 Marchantia polymorpha HOM05D004245 ORTHO05D004783 3.1e-57 225.3 144 76.4
PSO764G0231 Papaver somniferum HOM05D004245 ORTHO05D004783 5.3e-57 224.6 137 81.0
Solyc01g097970.4 Solanum lycopersicum HOM05D004245 ORTHO05D004783 6.9e-57 224.2 133 85.0
SMO146G0275 Selaginella moellendorffii HOM05D004245 ORTHO05D004783 1.5e-56 223.0 138 79.0
Pp3c16_25660 Physcomitrium patens HOM05D004245 ORTHO05D004783 2.0e-56 222.6 144 76.4
Migut.N00497 Erythranthe guttata HOM05D004245 ORTHO05D004783 2.6e-56 222.2 128 83.6
Rhsim06G0034500 Rhododendron simsii HOM05D004245 ORTHO05D004783 3.4e-56 221.9 148 75.7
ATR0124G052 Amborella trichopoda HOM05D004245 ORTHO05D004783 9.9e-56 220.3 139 78.4
Rhsim07G0237700 Rhododendron simsii HOM05D004245 ORTHO05D004783 1.7e-55 219.5 181 64.6
SEGI_12681 Sequoiadendron giganteum HOM05D004245 ORTHO05D004783 2.9e-55 218.8 139 79.9
Sabra02G0198600 Salix brachista HOM05D004245 ORTHO05D004783 8.4e-55 217.2 170 65.9
AagrBONN_evm.TU.Sc2ySwM_117.1092 Anthoceros agrestis HOM05D004245 ORTHO05D004783 4.2e-54 214.9 144 72.2
MD08G1034500 Malus domestica HOM05D004245 ORTHO05D004783 2.7e-53 212.2 150 73.3
Os03g0669100 Oryza sativa ssp. japonica HOM05D004245 ORTHO05D004783 3.9e-52 208.4 127 81.1
HPP92_000939 Vanilla planifolia HOM05D004245 ORTHO05D004783 5.6e-51 204.5 127 80.3
CBR_g37457 Chara braunii HOM05D004245 ORTHO05D004783 7.4e-51 204.1 145 68.3
MCO05G374 Micromonas commoda HOM05D004245 ORTHO05D004783 1.4e-49 199.9 139 69.8
Cre16.g667850 Chlamydomonas reinhardtii HOM05D004245 ORTHO05D004783 2.5e-46 189.1 138 65.2
PRCOL_00002276 Prasinoderma coloniale HOM05D004245 ORTHO05D004783 8.5e-39 164.1 140 57.9
Nitab4.5_0004954g0010 Nicotiana tabacum HOM05D004245 ORTHO05D004783 5.5e-38 161.4 122 67.2
Cfa018144 Carpinus fangiana HOM05D004245 ORTHO05D004783 4.6e-37 158.3 139 61.9
Peaxi162Scf00690g00216 Petunia axillaris HOM05D004245 ORTHO05D004783 4.6e-37 158.3 122 66.4
Cc10_g02990 Coffea canephora HOM05D004245 ORTHO05D004783 7.9e-37 157.5 122 66.4
PGSC0003DMG400005159 Solanum tuberosum HOM05D004245 ORTHO05D004783 9.7e-35 150.6 122 63.9
unitig_85.g27241 Utricularia gibba HOM05D004245 ORTHO05D004783 1.3e-34 150.2 82 85.4
CAN.G1226.1 Capsicum annuum HOM05D004245 ORTHO05D004783 8.2e-34 147.5 121 63.6
Solyc04g080250.3 Solanum lycopersicum HOM05D004245 ORTHO05D004783 9.1e-33 144.1 122 61.5
Oeu029862.1 Olea europaea HOM05D004245 ORTHO05D004783 1.3e-31 140.2 102 65.7
QL02p008415 Quercus lobata HOM05D000526 ORTHO05D004783 2.2e-31 139.4 112 64.3
CBR_g21266 Chara braunii HOM05D004245 ORTHO05D004783 1.1e-30 137.1 137 54.0
unitig_578.g16734 Utricularia gibba HOM05D004245 ORTHO05D004783 5.5e-30 134.8 127 62.2
CBR_g21272 Chara braunii HOM05D004245 ORTHO05D004783 1.8e-28 129.8 137 48.9
SHI03308 Sapria himalayana HOM05D004245 ORTHO05D004783 2.2e-26 122.9 79 75.9
Sopen04g033830 Solanum pennellii HOM05D004245 ORTHO05D004783 5.3e-25 118.2 89 66.3
Atru.chr6.1642 Acer truncatum HOM05D004245 ORTHO05D004783 1.5e-24 116.7 82 68.3
Peaxi162Scf00225g00127 Petunia axillaris HOM05D004245 ORTHO05D004783 1.2e-21 107.1 77 75.3
Atru.chr6.1643 Acer truncatum HOM05D004245 ORTHO05D004783 3.0e-20 102.4 69 71.0
SHI09478 Sapria himalayana HOM05D004245 ORTHO05D004783 5.2e-20 101.7 70 68.6
DCAR_020970 Daucus carota HOM05D004245 ORTHO05D004783 6.7e-20 101.3 60 80.0
Lsat_1_v5_gn_8_78860 Lactuca sativa HOM05D004245 ORTHO05D004783 2.0e-19 99.8 65 75.4
Nitab4.5_0002361g0180 Nicotiana tabacum HOM05D004245 ORTHO05D004783 2.6e-19 99.4 65 76.9
Nitab4.5_0002840g0080 Nicotiana tabacum HOM05D004245 ORTHO05D004783 2.6e-19 99.4 75 69.3
Lsat_1_v5_gn_5_29181 Lactuca sativa HOM05D004245 ORTHO05D004783 3.3e-19 99.0 58 82.8
vmacro04520 Vaccinium macrocarpon HOM05D004245 ORTHO05D004783 4.4e-19 98.6 70 71.4
Peaxi162Scf00037g01715 Petunia axillaris HOM05D004245 ORTHO05D004783 7.4e-19 97.8 58 81.0
SGA_v2.0_scaffold326G48710 Striga asiatica HOM05D004245 ORTHO05D004783 7.4e-19 97.8 66 75.8
Nitab4.5_0006179g0050 Nicotiana tabacum HOM05D004245 ORTHO05D004783 2.2e-18 96.3 85 62.4
Cfa018886 Carpinus fangiana HOM05D004245 ORTHO05D004783 4.8e-18 95.1 62 74.2
Hund11091 Selenicereus undatus HOM05D004245 ORTHO05D004783 4.8e-18 95.1 61 77.0
Nitab4.5_0002612g0110 Nicotiana tabacum HOM05D004245 ORTHO05D004783 1.1e-17 94.0 58 79.3
Atru.chr2.1957 Acer truncatum HOM05D004245 ORTHO05D004783 1.4e-17 93.6 56 73.2
Sed0016726 Sechium edule HOM05D004245 ORTHO05D004783 1.4e-17 93.6 57 77.2
Atru.chr13.1771 Acer truncatum HOM05D004245 ORTHO05D004783 6.1e-13 78.2 66 62.1
SHI20747 Sapria himalayana HOM05D003927 ORTHO05D004905 1.4e-12 77.0 62 61.3
Lsat_1_v5_gn_0_32861 Lactuca sativa HOM05D031264 ORTHO05D004783 7.5e-11 71.2 123 37.4
COL.COLO4_04917 Corchorus olitorius HOM05D004245 ORTHO05D004783 9.7e-11 70.9 45 75.6
vmacro21634 Vaccinium macrocarpon HOM05D004245 ORTHO05D004783 1.3e-10 70.5 88 47.7
Eucgr.C01497 Eucalyptus grandis HOM05D004245 ORTHO05D004783 1.1e-09 67.4 44 72.7
Actinidia15321 Actinidia chinensis HOM05D004245 ORTHO05D004783 9.1e-09 64.3 57 59.6
arahy.Tifrunner.gnm1.ann1.8Q4PR4 Arachis hypogaea HOM05D004245 ORTHO05D004783 2.7e-08 62.8 37 81.1
Dinv03456 Davidia involucrata HOM05D004245 ORTHO05D004783 5.0e-07 58.5 86 43.0
Nitab4.5_0000110g0590 Nicotiana tabacum HOM05D004245 ORTHO05D004783 6.5e-07 58.2 122 33.6
arahy.Tifrunner.gnm1.ann1.20SHP8 Arachis hypogaea HOM05D004245 ORTHO05D004783 7.2e-06 54.7 30 83.3
arahy.Tifrunner.gnm1.ann1.3ZQ4SN Arachis hypogaea HOM05D004245 ORTHO05D004783 7.2e-06 54.7 30 83.3


User provided reference genes

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