Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G19047 Trifolium pratense HOM05D007156 ORTHO05D003871 6.5e-70 267.3 138 100.0
Psat7g163320 Pisum sativum HOM05D007156 ORTHO05D003871 8.8e-35 150.6 136 64.0
Medtr0945s0020 Medicago truncatula HOM05D007156 ORTHO05D003871 5.0e-30 134.8 136 59.6
VMungo1127G0041 Vigna mungo HOM05D007156 ORTHO05D003871 1.0e-27 127.1 135 58.5
Phvul.011G107900 Phaseolus vulgaris HOM05D007156 ORTHO05D003871 8.9e-27 124.0 136 58.1
Glyma.06G301200 Glycine max HOM05D007156 ORTHO05D003871 5.7e-26 121.3 138 58.0
Glyma.12G103200 Glycine max HOM05D007156 ORTHO05D003871 1.4e-24 116.7 138 55.8
Lj3g0015957 Lotus japonicus HOM05D007156 ORTHO05D003871 2.4e-24 115.9 134 57.5
Ca_26200_v3 Cicer arietinum L. HOM05D007156 ORTHO05D003871 1.7e-22 109.8 116 57.8
Glyma.13G304200 Glycine max HOM05D007156 ORTHO05D003871 8.6e-22 107.5 136 51.5
Lj3g0000666 Lotus japonicus HOM05D007156 ORTHO05D003871 1.0e-19 100.5 126 48.4
Sabra19G0123400 Salix brachista HOM05D007156 ORTHO05D003871 1.0e-19 100.5 59 83.1
Phvul.005G111100 Phaseolus vulgaris HOM05D007156 ORTHO05D003871 2.3e-19 99.4 125 47.2
Manes.12G077701 Manihot esculenta HOM05D007156 ORTHO05D003871 5.8e-18 94.7 134 47.8
VMungo1080G0311 Vigna mungo HOM05D007156 ORTHO05D003871 5.8e-18 94.7 129 49.6
Potri.019G125100 Populus trichocarpa HOM05D007156 ORTHO05D003871 1.3e-17 93.6 84 60.7
Sabra13G0122400 Salix brachista HOM05D007156 ORTHO05D003871 3.7e-17 92.0 58 77.6
Thecc.02G165500 Theobroma cacao HOM05D007156 ORTHO05D003871 4.9e-17 91.7 129 46.5
FAN02G1242 Fragaria x ananassa HOM05D007156 ORTHO05D003871 6.4e-17 91.3 136 49.3
Lalb_Chr24g0393601 Lupinus albus HOM05D007156 ORTHO05D003871 6.4e-17 91.3 138 45.7
RcHm_v2.0_Chr2g0160641 Rosa chinensis HOM05D007156 ORTHO05D003871 6.4e-17 91.3 134 48.5
Potri.013G152300 Populus trichocarpa HOM05D007156 ORTHO05D003871 8.3e-17 90.9 124 49.2
QL08p034497 Quercus lobata HOM05D007156 ORTHO05D003871 8.3e-17 90.9 130 49.2
FAN05G2387 Fragaria x ananassa HOM05D007156 ORTHO05D003871 1.4e-16 90.1 136 48.5
FAN09G0550 Fragaria x ananassa HOM05D007156 ORTHO05D003871 1.4e-16 90.1 136 48.5
Cfa014479 Carpinus fangiana HOM05D007156 ORTHO05D003871 1.9e-16 89.7 126 51.6
Haze_12992 Corylus avellana HOM05D007156 ORTHO05D003871 3.2e-16 89.0 126 50.8
COL.COLO4_13040 Corchorus olitorius HOM05D007156 ORTHO05D003871 4.1e-16 88.6 57 77.2
TPR.G18057 Trifolium pratense HOM05D007156 ORTHO05D003871 7.0e-16 87.8 133 42.1
FvH4_6g43890 Fragaria vesca HOM05D007156 ORTHO05D003871 9.2e-16 87.4 136 47.8
FAN14G5947 Fragaria x ananassa HOM05D007156 ORTHO05D003871 9.2e-16 87.4 136 47.8
Sabra19G0131200 Salix brachista HOM05D007156 ORTHO05D003871 1.2e-15 87.0 46 89.1
Cpa.g.sc34.47 Carica papaya HOM05D007156 ORTHO05D003871 1.6e-15 86.7 52 82.7
arahy.Tifrunner.gnm1.ann1.ABE34K Arachis hypogaea HOM05D007156 ORTHO05D003871 2.7e-15 85.9 64 71.9
CSS0000680 Camellia sinensis var. sinensis HOM05D007156 ORTHO05D003871 2.7e-15 85.9 100 53.0
Ciclev10017232m.g Citrus clementina HOM05D007156 ORTHO05D003871 2.7e-15 85.9 140 43.6
MBI18_g20355_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 2.7e-15 85.9 61 70.5
Migut.M00380 Erythranthe guttata HOM05D007156 ORTHO05D003871 7.8e-15 84.3 67 68.7
MBI02_g43089_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 1.3e-14 83.6 59 72.9
Sed0007405 Sechium edule HOM05D007156 ORTHO05D003871 1.3e-14 83.6 69 63.8
TAR271G0004 Trochodendron aralioides HOM05D007156 ORTHO05D003871 1.3e-14 83.6 76 59.2
MBI02_g42366_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 1.7e-14 83.2 56 75.0
MBI02_g43088_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 1.7e-14 83.2 56 75.0
Prupe.3G223500 Prunus persica HOM05D007156 ORTHO05D003871 1.7e-14 83.2 126 45.2
ClCG02G001520 Citrullus lanatus HOM05D007156 ORTHO05D003871 2.3e-14 82.8 55 76.4
MBI02_g42365_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 2.3e-14 82.8 56 75.0
Psat5g266920 Pisum sativum HOM05D007156 ORTHO05D003871 2.3e-14 82.8 133 42.1
Atru.chr6.3108 Acer truncatum HOM05D007156 ORTHO05D003871 3.9e-14 82.0 127 44.9
Dinv18559 Davidia involucrata HOM05D007156 ORTHO05D003871 3.9e-14 82.0 123 45.5
Hma1.2p1_0712F.1_g207550 Hydrangea macrophylla HOM05D007156 ORTHO05D003871 1.1e-13 80.5 135 43.7
CiPaw.03G165400 Carya illinoinensis HOM05D007156 ORTHO05D003871 1.5e-13 80.1 143 42.7
CiPaw.04G120100 Carya illinoinensis HOM05D007156 ORTHO05D003871 1.5e-13 80.1 140 47.9
Ca_01559_v3 Cicer arietinum L. HOM05D007156 ORTHO05D003871 4.3e-13 78.6 69 60.9
unitig_746.g26730 Utricularia gibba HOM05D007156 ORTHO05D003871 5.6e-13 78.2 83 49.4
Sed0001937 Sechium edule HOM05D007156 ORTHO05D003871 1.2e-12 77.0 67 67.2
Gorai.005G208200 Gossypium raimondii HOM05D007156 ORTHO05D003871 1.6e-12 76.6 133 41.4
Actinidia12482 Actinidia chinensis HOM05D007156 ORTHO05D003871 2.8e-12 75.9 67 59.7
Gohir.D02G185700 Gossypium hirsutum HOM05D007156 ORTHO05D003871 3.6e-12 75.5 133 41.4
CsaV3_7G003930 Cucumis sativus L. HOM05D007156 ORTHO05D003871 1.1e-11 73.9 68 61.8
Gohir.A03G162600 Gossypium hirsutum HOM05D007156 ORTHO05D003871 1.1e-11 73.9 133 39.8
Nn2g11286 Nelumbo nucifera HOM05D007156 ORTHO05D003871 1.1e-11 73.9 54 63.0
MBI18_g38397_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 1.4e-11 73.6 70 60.0
CAN.G86.35 Capsicum annuum HOM05D007156 ORTHO05D003871 1.8e-11 73.2 80 56.2
Eucgr.A01740 Eucalyptus grandis HOM05D007156 ORTHO05D003871 1.8e-11 73.2 38 92.1
MSTRG.6540 Avicennia marina HOM05D007156 ORTHO05D003871 2.3e-11 72.8 76 56.6
Dinv17859 Davidia involucrata HOM05D001601 ORTHO05D006936 4.0e-11 72.0 51 64.7
Sopen07g026540 Solanum pennellii HOM05D007156 ORTHO05D003871 4.0e-11 72.0 67 58.2
MD09G1102100 Malus domestica HOM05D007156 ORTHO05D003871 5.2e-11 71.6 69 59.4
PGSC0003DMG400013754 Solanum tuberosum HOM05D007156 ORTHO05D003871 6.8e-11 71.2 52 67.3
Solyc12g005690.1 Solanum lycopersicum HOM05D007156 ORTHO05D003871 8.9e-11 70.9 126 38.9
Gohir.A04G106700 Gossypium hirsutum HOM05D007156 ORTHO05D003871 1.5e-10 70.1 130 42.3
Peaxi162Scf00012g00273 Petunia axillaris HOM05D007156 ORTHO05D003871 1.5e-10 70.1 48 72.9
Solyc07g052990.1 Solanum lycopersicum HOM05D007156 ORTHO05D003871 1.5e-10 70.1 75 53.3
MD09G1127500 Malus domestica HOM05D007156 ORTHO05D003871 2.0e-10 69.7 73 54.8
Nitab4.5_0001302g0030 Nicotiana tabacum HOM05D007156 ORTHO05D003871 2.6e-10 69.3 110 43.6
Medtr2g089190 Medicago truncatula HOM05D007156 ORTHO05D003871 3.4e-10 68.9 135 37.0
CSS0043735 Camellia sinensis var. sinensis HOM05D007156 ORTHO05D003871 4.4e-10 68.6 83 54.2
Gorai.012G132600 Gossypium raimondii HOM05D007156 ORTHO05D003871 4.4e-10 68.6 133 42.1
Nitab4.5_0009996g0020 Nicotiana tabacum HOM05D007156 ORTHO05D003871 4.4e-10 68.6 131 41.2
Rhsim06G0154900 Rhododendron simsii HOM05D007156 ORTHO05D003871 5.8e-10 68.2 49 67.3
unitig_899.g15247 Utricularia gibba HOM05D007156 ORTHO05D003871 5.8e-10 68.2 78 48.7
Sed0003235 Sechium edule HOM05D007156 ORTHO05D003871 1.3e-09 67.0 58 60.3
ATR0804G053 Amborella trichopoda HOM05D007156 ORTHO05D003871 2.2e-09 66.2 45 64.4
Dinv18957 Davidia involucrata HOM05D007156 ORTHO05D003871 2.9e-09 65.9 46 60.9
PGSC0003DMG400026188 Solanum tuberosum HOM05D007156 ORTHO05D003871 2.9e-09 65.9 59 61.0
Duzib160G0418 Durio zibethinus HOM05D001601 ORTHO05D006936 3.7e-09 65.5 46 63.0
TAR633G1059 Trochodendron aralioides HOM05D007866 ORTHO05D003871 3.7e-09 65.5 50 62.0
Thecc.06G206300 Theobroma cacao HOM05D001601 ORTHO05D006936 6.4e-09 64.7 46 65.2
Peaxi162Scf00007g00157 Petunia axillaris HOM05D007156 ORTHO05D003871 1.4e-08 63.5 63 54.0
PGSC0003DMG400021719 Solanum tuberosum HOM05D001601 ORTHO05D006936 1.4e-08 63.5 47 57.4
ClCG02G011170 Citrullus lanatus HOM05D007156 ORTHO05D003871 1.9e-08 63.2 54 61.1
CSS0008619 Camellia sinensis var. sinensis HOM05D007156 ORTHO05D003871 2.4e-08 62.8 46 63.0
SGA_v2.0_scaffold70G23435 Striga asiatica HOM05D007156 ORTHO05D003871 2.4e-08 62.8 56 60.7
CsaV3_6G012600 Cucumis sativus L. HOM05D007156 ORTHO05D003871 3.2e-08 62.4 46 69.6
BcaB04g18538 Brassica carinata HOM05D007866 ORTHO05D003871 4.1e-08 62.0 57 57.9
BcaB04g18539 Brassica carinata HOM05D007866 ORTHO05D003871 4.1e-08 62.0 57 57.9
CSS0048777 Camellia sinensis var. sinensis HOM05D007156 ORTHO05D003871 5.4e-08 61.6 63 47.6
Sabra04G0016700 Salix brachista HOM05D007156 ORTHO05D003871 9.2e-08 60.8 85 38.8
CiPaw.09G201000 Carya illinoinensis HOM05D007866 ORTHO05D003871 1.2e-07 60.5 58 51.7
Sopen02g024570 Solanum pennellii HOM05D007156 ORTHO05D003871 1.2e-07 60.5 50 54.0
Rhsim02G0116500 Rhododendron simsii HOM05D007156 ORTHO05D003871 1.6e-07 60.1 40 67.5
THA.LOC104816660 Tarenaya hassleriana HOM05D007866 ORTHO05D003871 1.6e-07 60.1 66 43.9
AL3G20400 Arabidopsis lyrata HOM05D007866 ORTHO05D003871 2.1e-07 59.7 60 53.3
Nn1g03759 Nelumbo nucifera HOM05D007156 ORTHO05D003871 2.7e-07 59.3 128 37.5
Nitab4.5_0005140g0010 Nicotiana tabacum HOM05D007156 ORTHO05D003871 2.7e-07 59.3 36 69.4
Sp3g07650 Schrenkiella parvula HOM05D007866 ORTHO05D003871 2.7e-07 59.3 56 51.8
AT3G09280 Arabidopsis thaliana HOM05D007866 ORTHO05D003871 3.5e-07 58.9 80 46.2
BraA03t12778Z Brassica rapa HOM05D007866 ORTHO05D003871 3.5e-07 58.9 66 51.5
CARHR083640 Cardamine hirsuta HOM05D007866 ORTHO05D003871 3.5e-07 58.9 60 53.3
Nitab4.5_0000362g0160 Nicotiana tabacum HOM05D007866 ORTHO05D003871 3.5e-07 58.9 74 39.2
C03p43730 Brassica napus HOM05D007866 ORTHO05D003871 4.6e-07 58.5 66 51.5
AL70U10030 Arabidopsis lyrata HOM05D007866 ORTHO05D003871 7.8e-07 57.8 81 45.7
Thhalv10021969m.g Eutrema salsugineum HOM05D007866 ORTHO05D003871 7.8e-07 57.8 57 54.4
Potri.004G029700 Populus trichocarpa HOM05D012748 ORTHO05D014783 7.8e-07 57.8 44 63.6
Solyc02g079800.1 Solanum lycopersicum HOM05D007156 ORTHO05D003871 7.8e-07 57.8 47 53.2
TAR633G1409 Trochodendron aralioides HOM05D007866 ORTHO05D003871 7.8e-07 57.8 46 58.7
Potri.006G092200 Populus trichocarpa HOM05D007866 ORTHO05D003871 1.3e-06 57.0 130 32.3
PGSC0003DMG400037339 Solanum tuberosum HOM05D007866 ORTHO05D003871 1.3e-06 57.0 86 38.4
Carub.0003s0839 Capsella rubella HOM05D007866 ORTHO05D003871 1.7e-06 56.6 70 50.0
Gohir.A01G221050 Gossypium hirsutum HOM05D007866 ORTHO05D003871 1.7e-06 56.6 36 63.9
Gohir.D01G209950 Gossypium hirsutum HOM05D007866 ORTHO05D003871 1.7e-06 56.6 36 63.9
Gorai.002G255600 Gossypium raimondii HOM05D007866 ORTHO05D003871 1.7e-06 56.6 36 63.9
Lj3g0011949 Lotus japonicus HOM05D007866 ORTHO05D003871 1.7e-06 56.6 150 33.3
MD12G1154500 Malus domestica HOM05D007866 ORTHO05D003871 1.7e-06 56.6 64 50.0
Sabra16G0103600 Salix brachista HOM05D007866 ORTHO05D003871 1.7e-06 56.6 69 42.0
BcaC01g04222 Brassica carinata HOM05D007866 ORTHO05D003871 2.3e-06 56.2 72 43.1
COL.COLO4_14698 Corchorus olitorius HOM05D007866 ORTHO05D003871 2.3e-06 56.2 164 35.4
Sopen09g006160 Solanum pennellii HOM05D007866 ORTHO05D003871 2.3e-06 56.2 94 38.3
CSS0047873 Camellia sinensis var. sinensis HOM05D007866 ORTHO05D003871 3.0e-06 55.8 38 63.2
Haze_20881 Corylus avellana HOM05D007866 ORTHO05D003871 3.0e-06 55.8 40 62.5
Haze_20890 Corylus avellana HOM05D007866 ORTHO05D003871 3.0e-06 55.8 40 62.5
Potri.016G103700 Populus trichocarpa HOM05D007866 ORTHO05D003871 3.0e-06 55.8 98 35.7
RcHm_v2.0_Chr3g0464671 Rosa chinensis HOM05D007866 ORTHO05D003871 3.0e-06 55.8 62 50.0
Lalb_Chr07g0193271 Lupinus albus HOM05D007866 ORTHO05D003871 3.9e-06 55.5 96 33.3
Nitab4.5_0008116g0010 Nicotiana tabacum HOM05D007866 ORTHO05D003871 3.9e-06 55.5 97 34.0
Rhsim13G0163300 Rhododendron simsii HOM05D007156 ORTHO05D003871 3.9e-06 55.5 45 51.1
Atru.chr8.2088 Acer truncatum HOM05D007866 ORTHO05D003871 5.1e-06 55.1 137 29.9
Ciclev10013493m.g Citrus clementina HOM05D007866 ORTHO05D003871 5.1e-06 55.1 136 28.7
Duzib128G0987 Durio zibethinus HOM05D007866 ORTHO05D003871 5.1e-06 55.1 72 45.8
Aqoxy4G02532 Aquilegia oxysepala HOM05D007156 ORTHO05D003871 6.6e-06 54.7 87 43.7
EL10Ac7g16230 Beta vulgaris HOM05D007866 ORTHO05D003871 6.6e-06 54.7 96 34.4
unitig_744.g24528 Utricularia gibba HOM05D004209 ORTHO05D004970 6.6e-06 54.7 39 59.0
COL.COLO4_31669 Corchorus olitorius HOM05D007156 ORTHO05D014783 8.6e-06 54.3 46 56.5


User provided reference genes

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