Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G19005 Trifolium pratense HOM05D003435 ORTHO05D004032 0.0e+00 1717.2 883 100.0
Medtr8g079820 Medicago truncatula HOM05D003435 ORTHO05D004032 0.0e+00 1632.8 885 94.7
Ca_22188_v3 Cicer arietinum L. HOM05D003435 ORTHO05D004032 0.0e+00 1629.0 885 94.6
Psat4g087800 Pisum sativum HOM05D003435 ORTHO05D004032 0.0e+00 1619.0 885 94.4
Glyma.05G090500 Glycine max HOM05D003435 ORTHO05D004032 0.0e+00 1526.5 888 88.9
Lj4g0022564 Lotus japonicus HOM05D003435 ORTHO05D004032 0.0e+00 1494.9 886 88.1
Glyma.17G176300 Glycine max HOM05D003435 ORTHO05D004032 0.0e+00 1487.6 888 86.7
Phvul.003G245800 Phaseolus vulgaris HOM05D003435 ORTHO05D004032 0.0e+00 1453.3 889 86.1
Lalb_Chr16g0388361 Lupinus albus HOM05D003435 ORTHO05D004032 0.0e+00 1412.5 866 84.4
arahy.Tifrunner.gnm1.ann1.IHL9QQ Arachis hypogaea HOM05D003435 ORTHO05D004032 0.0e+00 1408.7 890 83.9
VMungo0251G2411 Vigna mungo HOM05D003435 ORTHO05D004032 0.0e+00 1407.5 858 85.3
Glyma.01G184500 Glycine max HOM05D003435 ORTHO05D004032 0.0e+00 1374.8 885 81.9
VMungo1215G2578 Vigna mungo HOM05D003435 ORTHO05D004032 0.0e+00 1359.0 885 81.1
Lj2g0013536 Lotus japonicus HOM05D003435 ORTHO05D004032 0.0e+00 1333.9 854 81.5
Cfa003996 Carpinus fangiana HOM05D003435 ORTHO05D004032 0.0e+00 1324.7 897 78.7
Medtr5g017800 Medicago truncatula HOM05D003435 ORTHO05D004032 0.0e+00 1317.8 886 78.2
Haze_15428 Corylus avellana HOM05D003435 ORTHO05D004032 0.0e+00 1316.2 933 76.0
Lalb_Chr09g0323051 Lupinus albus HOM05D003435 ORTHO05D004032 0.0e+00 1310.4 856 80.5
TPR.G31102 Trifolium pratense HOM05D003435 ORTHO05D004032 0.0e+00 1308.1 890 78.5
Ca_24784_v3 Cicer arietinum L. HOM05D003435 ORTHO05D004032 0.0e+00 1299.3 930 74.9
TAR381G0144 Trochodendron aralioides HOM05D003435 ORTHO05D004032 0.0e+00 1299.3 896 76.8
Potri.007G041000 Populus trichocarpa HOM05D003435 ORTHO05D004032 0.0e+00 1298.5 893 76.5
Sabra07G0036700 Salix brachista HOM05D003435 ORTHO05D004032 0.0e+00 1295.4 891 76.2
TAR376G0307 Trochodendron aralioides HOM05D003435 ORTHO05D004032 0.0e+00 1291.9 898 76.5
CiPaw.01G021600 Carya illinoinensis HOM05D003435 ORTHO05D004032 0.0e+00 1291.2 895 77.2
MD15G1280900 Malus domestica HOM05D003435 ORTHO05D004032 0.0e+00 1291.2 898 77.6
RcHm_v2.0_Chr2g0105001 Rosa chinensis HOM05D003435 ORTHO05D004032 0.0e+00 1282.3 893 77.2
FvH4_1g15690 Fragaria vesca HOM05D003435 ORTHO05D004032 0.0e+00 1281.5 893 76.7
FAN19G0078 Fragaria x ananassa HOM05D003435 ORTHO05D004032 0.0e+00 1280.4 893 76.6
FAN26G2684 Fragaria x ananassa HOM05D003435 ORTHO05D004032 0.0e+00 1280.0 892 76.5
MD02G1168900 Malus domestica HOM05D003435 ORTHO05D004032 0.0e+00 1279.2 900 77.4
Prupe.7G136400 Prunus persica HOM05D003435 ORTHO05D004032 0.0e+00 1278.5 900 77.4
FAN23G2700 Fragaria x ananassa HOM05D003435 ORTHO05D004032 0.0e+00 1277.3 892 76.3
Oeu049304.1 Olea europaea HOM05D003435 ORTHO05D004032 0.0e+00 1263.4 893 74.7
Psat2g165400 Pisum sativum HOM05D003435 ORTHO05D004032 0.0e+00 1259.6 886 75.4
Sed0012547 Sechium edule HOM05D003435 ORTHO05D004032 0.0e+00 1258.4 894 74.3
Atru.chr3.398 Acer truncatum HOM05D003435 ORTHO05D004032 0.0e+00 1258.0 914 74.1
FAN28G0748 Fragaria x ananassa HOM05D003435 ORTHO05D004032 0.0e+00 1257.3 892 75.6
CSS0011380 Camellia sinensis var. sinensis HOM05D003435 ORTHO05D004032 0.0e+00 1255.0 894 75.4
CSS0024619 Camellia sinensis var. sinensis HOM05D003435 ORTHO05D004032 0.0e+00 1255.0 894 75.4
CANSAT01G2969 Cannabis sativa HOM05D003435 ORTHO05D004032 0.0e+00 1255.0 894 75.5
Cc07_g05840 Coffea canephora HOM05D003435 ORTHO05D004032 0.0e+00 1252.7 893 74.1
Manes.13G126200 Manihot esculenta HOM05D003435 ORTHO05D004032 0.0e+00 1250.3 897 74.7
Thecc.01G052400 Theobroma cacao HOM05D003435 ORTHO05D004032 0.0e+00 1246.1 898 74.2
Aqoxy6G01408_Aqoxy6G01409 Aquilegia oxysepala HOM05D003435 ORTHO05D004032 0.0e+00 1244.2 891 74.3
QL06p042284 Quercus lobata HOM05D003435 ORTHO05D004032 0.0e+00 1239.6 865 76.9
Ciclev10024690m.g Citrus clementina HOM05D003435 ORTHO05D004032 0.0e+00 1233.8 898 73.2
Gorai.008G074500 Gossypium raimondii HOM05D003435 ORTHO05D004032 0.0e+00 1231.5 895 73.5
CsaV3_2G016800 Cucumis sativus L. HOM05D003435 ORTHO05D004032 0.0e+00 1230.3 901 73.1
Lj4C140G3 Lonicera japonica HOM05D003435 ORTHO05D004032 0.0e+00 1229.5 896 73.0
ECA232G3039 Erigeron canadensis HOM05D003435 ORTHO05D004032 0.0e+00 1228.8 891 72.8
Sc03g0001420 Simmondsia chinensis HOM05D003435 ORTHO05D004032 0.0e+00 1226.5 904 72.8
Gohir.D12G088600 Gossypium hirsutum HOM05D003435 ORTHO05D004032 0.0e+00 1226.1 895 73.2
Nn5g30194 Nelumbo nucifera HOM05D003435 ORTHO05D004032 0.0e+00 1225.3 917 72.3
Duzib147G1293 Durio zibethinus HOM05D003435 ORTHO05D004032 0.0e+00 1219.9 895 73.1
Rhsim08G0102200 Rhododendron simsii HOM05D003435 ORTHO05D004032 0.0e+00 1219.1 867 74.0
Nitab4.5_0000310g0180 Nicotiana tabacum HOM05D003435 ORTHO05D004032 0.0e+00 1217.6 919 72.1
THA.LOC104819223 Tarenaya hassleriana HOM05D003435 ORTHO05D004032 0.0e+00 1217.6 894 73.0
DCAR_011292 Daucus carota HOM05D003435 ORTHO05D004032 0.0e+00 1214.9 908 71.4
Nitab4.5_0000961g0120 Nicotiana tabacum HOM05D003435 ORTHO05D004032 0.0e+00 1214.5 886 73.7
HanXRQChr14g0430631 Helianthus annuus HOM05D003435 ORTHO05D004032 0.0e+00 1214.1 898 72.2
PSO675G6314 Papaver somniferum HOM05D003435 ORTHO05D004032 0.0e+00 1213.7 897 72.2
Manes.12G101600 Manihot esculenta HOM05D003435 ORTHO05D004032 0.0e+00 1213.4 901 72.3
COL.COLO4_11380 Corchorus olitorius HOM05D003435 ORTHO05D004032 0.0e+00 1210.7 896 72.4
TWI53G0909 Tripterygium wilfordii HOM05D003435 ORTHO05D004032 0.0e+00 1207.2 902 72.5
CAN.G836.66 Capsicum annuum HOM05D003435 ORTHO05D004032 0.0e+00 1206.4 892 72.9
MELO3C020891.2 Cucumis melo HOM05D003435 ORTHO05D004032 0.0e+00 1204.9 868 74.5
PSO541G5504 Papaver somniferum HOM05D003435 ORTHO05D004032 0.0e+00 1202.6 897 72.0
Sopen02g035220 Solanum pennellii HOM05D003435 ORTHO05D004032 0.0e+00 1201.4 891 72.4
Solyc02g090570.4 Solanum lycopersicum HOM05D003435 ORTHO05D004032 0.0e+00 1200.7 891 72.3
PGR119G1381 Punica granatum HOM05D003435 ORTHO05D004032 0.0e+00 1198.0 907 71.7
Nn1g05856 Nelumbo nucifera HOM05D003435 ORTHO05D004032 0.0e+00 1197.2 896 71.3
MSTRG.23766 Avicennia marina HOM05D003435 ORTHO05D004032 0.0e+00 1196.8 911 71.0
Peaxi162Scf00916g00135 Petunia axillaris HOM05D003435 ORTHO05D004032 0.0e+00 1196.8 887 73.1
Eucgr.F02662 Eucalyptus grandis HOM05D003435 ORTHO05D004032 0.0e+00 1196.4 898 72.5
AUR62031680 Chenopodium quinoa HOM05D003435 ORTHO05D004032 0.0e+00 1194.9 898 71.3
Gorai.007G211000 Gossypium raimondii HOM05D003435 ORTHO05D004032 0.0e+00 1193.3 899 72.3
Migut.H00454 Erythranthe guttata HOM05D003435 ORTHO05D004032 0.0e+00 1192.2 892 71.6
AUR62032563 Chenopodium quinoa HOM05D003435 ORTHO05D004032 0.0e+00 1191.8 898 70.8
Gohir.D11G197100 Gossypium hirsutum HOM05D003435 ORTHO05D004032 0.0e+00 1191.0 899 71.9
ClCG02G012690 Citrullus lanatus HOM05D003435 ORTHO05D004032 0.0e+00 1190.3 1109 60.8
Eucgr.F01659 Eucalyptus grandis HOM05D003435 ORTHO05D004032 0.0e+00 1190.3 898 72.0
Cpa.g.sc6.378 Carica papaya HOM05D003435 ORTHO05D004032 0.0e+00 1187.9 878 73.1
Gohir.A12G070200 Gossypium hirsutum HOM05D003435 ORTHO05D004032 0.0e+00 1186.8 895 71.8
Sp5g11620 Schrenkiella parvula HOM05D003435 ORTHO05D004032 0.0e+00 1179.1 904 70.6
Thhalv10010058m.g Eutrema salsugineum HOM05D003435 ORTHO05D004032 0.0e+00 1172.9 895 71.2
Carub.0005s1691 Capsella rubella HOM05D003435 ORTHO05D004032 0.0e+00 1169.8 910 70.0
AL5G30740 Arabidopsis lyrata HOM05D003435 ORTHO05D004032 0.0e+00 1167.9 894 71.0
BcaC07g39520 Brassica carinata HOM05D003435 ORTHO05D004032 0.0e+00 1167.9 895 71.2
AT3G50590 Arabidopsis thaliana HOM05D003435 ORTHO05D004032 0.0e+00 1166.8 911 70.3
C08p25650 Brassica napus HOM05D003435 ORTHO05D004032 0.0e+00 1166.8 895 71.1
BolC8t50184H Brassica oleracea HOM05D003435 ORTHO05D004032 0.0e+00 1166.8 895 71.1
A09p43620 Brassica napus HOM05D003435 ORTHO05D004032 0.0e+00 1165.2 895 70.9
BraA09t39823Z Brassica rapa HOM05D003435 ORTHO05D004032 0.0e+00 1161.4 907 70.1
BcaB01g00607 Brassica carinata HOM05D003435 ORTHO05D004032 0.0e+00 1156.7 895 70.8
EL10Ac2g02707 Beta vulgaris HOM05D003435 ORTHO05D004032 0.0e+00 1149.0 867 71.4
SGA_v2.0_scaffold15G07262 Striga asiatica HOM05D003435 ORTHO05D004032 0.0e+00 1148.7 926 68.9
CARHR160100 Cardamine hirsuta HOM05D003435 ORTHO05D004032 0.0e+00 1143.6 916 68.2
SalBow5G2384 Salvia bowleyana HOM05D003435 ORTHO05D004032 0.0e+00 1129.0 905 67.6
Aa31LG4G18760 Aethionema arabicum HOM05D003435 ORTHO05D004032 0.0e+00 1125.5 895 68.8
Aa31LG1G15390 Aethionema arabicum HOM05D003435 ORTHO05D004032 0.0e+00 1110.5 873 68.0
ATR0021G056 Amborella trichopoda HOM05D003435 ORTHO05D004032 0.0e+00 1094.0 917 64.8
Zm00001eb051800 Zea mays HOM05D003435 ORTHO05D004032 0.0e+00 1091.3 933 63.3
Lsat_1_v5_gn_4_167420 Lactuca sativa HOM05D003435 ORTHO05D004032 0.0e+00 1090.9 901 66.7
HPP92_006173 Vanilla planifolia HOM05D003435 ORTHO05D004032 8.9e-306 1053.5 886 64.7
HPP92_008982 Vanilla planifolia HOM05D003435 ORTHO05D004032 2.2e-304 1048.9 870 65.2
SEGI_22339 Sequoiadendron giganteum HOM05D003435 ORTHO05D004032 1.8e-298 1029.2 915 62.0
vmacro17935 Vaccinium macrocarpon HOM05D003435 ORTHO05D004032 2.2e-288 995.7 736 72.7
Actinidia16507 Actinidia chinensis HOM05D003435 ORTHO05D004032 7.8e-286 987.3 765 70.7
Potri.005G136300 Populus trichocarpa HOM05D003435 ORTHO05D004032 2.4e-266 922.5 681 72.5
Hund13566 Selenicereus undatus HOM05D003435 ORTHO05D004032 3.1e-250 869.0 686 70.3
Mapoly0038s0024 Marchantia polymorpha HOM05D003435 ORTHO05D004032 1.0e-245 854.0 920 52.3
SMO304G0064 Selaginella moellendorffii HOM05D003435 ORTHO05D004032 1.8e-245 853.2 900 54.0
AagrBONN_evm.TU.Sc2ySwM_117.2914 Anthoceros agrestis HOM05D003435 ORTHO05D004032 1.3e-240 837.0 925 52.2
HPP92_006187 Vanilla planifolia HOM05D003435 ORTHO05D004032 6.1e-238 828.2 729 62.6
CDE05G0341 Ceratophyllum demersum HOM05D003435 ORTHO05D004032 8.8e-237 824.3 741 61.4
Phvul.002G020500 Phaseolus vulgaris HOM05D003435 ORTHO05D004032 2.6e-233 812.8 569 74.3
Pp3c3_22080 Physcomitrium patens HOM05D003435 ORTHO05D004032 6.8e-229 798.1 903 51.5
Actinidia02768 Actinidia chinensis HOM05D003435 ORTHO05D004032 1.9e-215 753.4 627 68.3
Ah.10g029820 Amaranthus hybridus HOM05D003435 ORTHO05D004032 1.9e-199 700.3 483 74.3
CBR_g239 Chara braunii HOM05D003435 ORTHO05D004032 6.6e-184 648.7 1012 41.4
CBR_g11121 Chara braunii HOM05D003435 ORTHO05D004032 1.4e-181 641.0 1028 40.6
CDE05G0324 Ceratophyllum demersum HOM05D003435 ORTHO05D004032 2.2e-171 607.1 442 71.5
unitig_27.g25323 Utricularia gibba HOM05D003435 ORTHO05D004032 6.2e-166 589.0 585 60.0
Dinv39875 Davidia involucrata HOM05D003435 ORTHO05D004032 1.5e-151 541.2 290 90.7
Os09g0408000 Oryza sativa ssp. japonica HOM05D003435 ORTHO05D004032 4.1e-141 506.5 515 57.7
SHI23026 Sapria himalayana HOM05D003435 ORTHO05D004032 3.3e-135 486.9 550 54.2
unitig_27.g25322 Utricularia gibba HOM05D003435 ORTHO05D004032 3.1e-133 480.3 274 86.5
CDE05G1509 Ceratophyllum demersum HOM05D003435 ORTHO05D004032 6.1e-129 466.1 444 60.6
Psat0ss9382g0080 Pisum sativum HOM05D003435 ORTHO05D004032 4.5e-116 423.3 277 79.4
Ah.10g029830 Amaranthus hybridus HOM05D003435 ORTHO05D004032 5.0e-107 393.3 222 88.3
Os09g0407950 Oryza sativa ssp. japonica HOM05D003435 ORTHO05D004032 1.6e-84 318.5 194 79.4
arahy.Tifrunner.gnm1.ann1.B7G4FR Arachis hypogaea HOM05D003435 ORTHO05D004032 1.3e-78 298.9 158 94.3
GSVIVG01004639001 Vitis vinifera HOM05D003435 ORTHO05D004032 4.9e-78 297.0 194 79.4
Glyma.11G057700 Glycine max HOM05D003435 ORTHO05D004032 3.2e-77 294.3 198 77.8
vmacro17936 Vaccinium macrocarpon HOM05D003435 ORTHO05D004032 5.4e-77 293.5 158 91.1
GSVIVG01002593001 Vitis vinifera HOM05D003435 ORTHO05D004032 1.1e-72 279.3 157 84.7
CDE05G0314 Ceratophyllum demersum HOM05D003435 ORTHO05D004032 1.2e-68 265.8 157 82.2
SHI23027 Sapria himalayana HOM05D003435 ORTHO05D004032 8.1e-65 253.1 164 75.6
GSVIVG01004485001 Vitis vinifera HOM05D003435 ORTHO05D004032 2.4e-64 251.5 157 82.8
Psat4g190960 Pisum sativum HOM05D005005 ORTHO05D006178 2.1e-52 211.8 134 79.9
C01p29660 Brassica napus HOM05D003435 ORTHO05D004032 3.1e-48 198.0 207 59.4
BolC1t02908H Brassica oleracea HOM05D003435 ORTHO05D004032 3.1e-48 198.0 207 59.4
BcaC09g50042 Brassica carinata HOM05D003435 ORTHO05D004032 7.1e-45 186.8 135 72.6
Rhsim06G0113700 Rhododendron simsii HOM05D003435 ORTHO05D004032 5.6e-42 177.2 128 67.2
Psat7g159960 Pisum sativum HOM05D003635 ORTHO05D004283 4.0e-40 171.0 162 63.6
Psat6g176120 Pisum sativum HOM05D003435 ORTHO05D004032 2.2e-38 165.2 148 66.2
Hund13496 Selenicereus undatus HOM05D003435 ORTHO05D004032 7.9e-36 156.8 102 74.5
GSVIVG01002902001 Vitis vinifera HOM05D003435 ORTHO05D004032 3.0e-35 154.8 119 72.3
Psat7g159840 Pisum sativum HOM05D003435 ORTHO05D005869 2.1e-33 148.7 162 54.9
EL10Ac2g02709 Beta vulgaris HOM05D003435 ORTHO05D004032 3.1e-32 144.8 283 39.9
Actinidia02767 Actinidia chinensis HOM05D003435 ORTHO05D004032 2.5e-29 135.2 74 89.2
Psat3g193680 Pisum sativum HOM05D003463 ORTHO05D030491 1.1e-24 119.8 65 93.8
Psat4g159400 Pisum sativum HOM05D003463 ORTHO05D004846 1.1e-24 119.8 84 73.8
Psat5g056680 Pisum sativum HOM05D003435 ORTHO05D023081 1.2e-23 116.3 106 60.4
BcaB02g09979 Brassica carinata HOM05D003435 ORTHO05D004032 3.4e-23 114.8 76 73.7
COL.COLO4_18252 Corchorus olitorius HOM05D003435 ORTHO05D004032 4.5e-23 114.4 159 42.8
Psat4g095840 Pisum sativum HOM05D003435 ORTHO05D020975 1.0e-22 113.2 67 86.6
HPP92_006267 Vanilla planifolia HOM05D003435 ORTHO05D004032 6.1e-12 77.4 199 31.7
HPP92_006266 Vanilla planifolia HOM05D003435 ORTHO05D004032 7.9e-12 77.0 106 43.4
COL.COLO4_11232 Corchorus olitorius HOM05D001978 ORTHO05D018189 3.3e-10 71.6 59 64.4
Mapoly0072s0002 Marchantia polymorpha HOM05D003435 ORTHO05D004032 1.7e-09 69.3 56 60.7
Psat4g191000 Pisum sativum HOM05D003435 ORTHO05D004032 8.2e-09 67.0 36 91.7
Psat5g173200 Pisum sativum HOM05D000518 ORTHO05D000737 4.1e-08 64.7 35 91.4


User provided reference genes

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