Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G18917 Trifolium pratense HOM05D001235 ORTHO05D005684 3.9e-76 288.1 150 100.0
Medtr6g093240 Medicago truncatula HOM05D001235 ORTHO05D005684 7.1e-62 240.7 134 92.5
Medtr1g117000 Medicago truncatula HOM05D001235 ORTHO05D005684 2.5e-59 232.3 134 91.8
Ca_11427_v3 Cicer arietinum L. HOM05D001235 ORTHO05D005684 1.1e-57 226.9 134 86.6
Ca_29863_v3 Cicer arietinum L. HOM05D001235 ORTHO05D005684 1.1e-57 226.9 134 86.6
Psat6g244000 Pisum sativum HOM05D001235 ORTHO05D005684 6.8e-57 224.2 134 86.6
Glyma.10G298000 Glycine max HOM05D001235 ORTHO05D005684 9.6e-51 203.8 134 76.9
Phvul.007G001400 Phaseolus vulgaris HOM05D001235 ORTHO05D005684 2.1e-50 202.6 134 77.6
VMungo0720G0937 Vigna mungo HOM05D001235 ORTHO05D005684 3.6e-50 201.8 135 76.3
Lj5g0010068 Lotus japonicus HOM05D001235 ORTHO05D005684 2.4e-49 199.1 134 76.9
Lalb_Chr02g0144531 Lupinus albus HOM05D001235 ORTHO05D005684 2.0e-48 196.1 135 75.6
CiPaw.01G110000 Carya illinoinensis HOM05D001235 ORTHO05D005684 6.4e-39 164.5 130 66.2
GSVIVG01031639001 Vitis vinifera HOM05D001235 ORTHO05D005684 1.6e-37 159.8 127 64.6
Cfa008685 Carpinus fangiana HOM05D001235 ORTHO05D005684 2.7e-37 159.1 130 64.6
MD04G1025900 Malus domestica HOM05D001235 ORTHO05D005684 2.7e-37 159.1 120 68.3
TWI73G0237 Tripterygium wilfordii HOM05D001235 ORTHO05D005684 2.7e-37 159.1 122 66.4
Potri.002G234500 Populus trichocarpa HOM05D001235 ORTHO05D005684 7.9e-37 157.5 122 68.9
Potri.014G147900 Populus trichocarpa HOM05D001235 ORTHO05D005684 7.9e-37 157.5 102 77.5
Sed0023516 Sechium edule HOM05D001235 ORTHO05D005684 2.3e-36 156.0 126 63.5
Duzib151G0601 Durio zibethinus HOM05D001235 ORTHO05D005684 3.0e-36 155.6 121 66.9
RcHm_v2.0_Chr4g0411331 Rosa chinensis HOM05D001235 ORTHO05D005684 3.9e-36 155.2 139 59.0
Gohir.D10G133800 Gossypium hirsutum HOM05D001235 ORTHO05D005684 8.7e-36 154.1 121 64.5
Duzib212G0549 Durio zibethinus HOM05D001235 ORTHO05D005684 1.9e-35 152.9 121 66.1
Gohir.A10G133100 Gossypium hirsutum HOM05D001235 ORTHO05D005684 1.9e-35 152.9 121 63.6
Gorai.011G147600 Gossypium raimondii HOM05D001235 ORTHO05D005684 1.9e-35 152.9 119 65.5
Dinv13678 Davidia involucrata HOM05D001235 ORTHO05D005684 3.3e-35 152.1 128 60.9
HanXRQChr01g0021711 Helianthus annuus HOM05D001235 ORTHO05D005684 3.3e-35 152.1 131 61.8
FAN22G1075 Fragaria x ananassa HOM05D001235 ORTHO05D005684 4.3e-35 151.8 122 65.6
FvH4_4g12510 Fragaria vesca HOM05D001235 ORTHO05D005684 7.4e-35 151.0 144 59.7
CAN.G681.26 Capsicum annuum HOM05D001235 ORTHO05D005684 9.6e-35 150.6 99 73.7
ECA248G1402 Erigeron canadensis HOM05D001235 ORTHO05D005684 9.6e-35 150.6 101 75.2
Nn1g08260 Nelumbo nucifera HOM05D001235 ORTHO05D005684 9.6e-35 150.6 111 71.2
FAN12G0235 Fragaria x ananassa HOM05D001235 ORTHO05D005684 1.6e-34 149.8 122 64.8
FAN17G0427 Fragaria x ananassa HOM05D001235 ORTHO05D005684 1.6e-34 149.8 122 65.6
Solyc09g098040.3 Solanum lycopersicum HOM05D001235 ORTHO05D005684 1.6e-34 149.8 104 70.2
Sopen09g035960 Solanum pennellii HOM05D001235 ORTHO05D005684 1.6e-34 149.8 104 70.2
PGSC0003DMG400016613 Solanum tuberosum HOM05D001235 ORTHO05D005684 1.6e-34 149.8 104 70.2
Gorai.006G226300 Gossypium raimondii HOM05D001235 ORTHO05D005684 2.8e-34 149.1 135 61.5
Prupe.1G175200 Prunus persica HOM05D001235 ORTHO05D005684 2.8e-34 149.1 120 65.8
ATR0686G153 Amborella trichopoda HOM05D001235 ORTHO05D005684 3.7e-34 148.7 136 58.1
Cpa.g.sc502.2 Carica papaya HOM05D001235 ORTHO05D005684 3.7e-34 148.7 138 60.1
FAN07G2568 Fragaria x ananassa HOM05D001235 ORTHO05D005684 3.7e-34 148.7 122 64.8
Nitab4.5_0001693g0060 Nicotiana tabacum HOM05D001235 ORTHO05D005684 3.7e-34 148.7 99 74.7
Atru.chr3.1828 Acer truncatum HOM05D001235 ORTHO05D005684 1.1e-33 147.1 122 62.3
MELO3C017735.2 Cucumis melo HOM05D001235 ORTHO05D005684 1.1e-33 147.1 94 74.5
Migut.N03329 Erythranthe guttata HOM05D001235 ORTHO05D005684 1.1e-33 147.1 110 67.3
Actinidia35919 Actinidia chinensis HOM05D001235 ORTHO05D005684 1.4e-33 146.7 135 58.5
Gohir.D09G202400 Gossypium hirsutum HOM05D001235 ORTHO05D005684 1.4e-33 146.7 134 61.2
Eucgr.H00494 Eucalyptus grandis HOM05D001235 ORTHO05D005684 1.8e-33 146.4 136 60.3
CsaV3_4G003110 Cucumis sativus L. HOM05D001235 ORTHO05D005684 3.1e-33 145.6 94 75.5
Oeu001997.1 Olea europaea HOM05D001235 ORTHO05D005684 3.1e-33 145.6 109 67.0
PSO170G5672 Papaver somniferum HOM05D001235 ORTHO05D005684 3.1e-33 145.6 131 63.4
MSTRG.22434 Avicennia marina HOM05D001235 ORTHO05D005684 4.0e-33 145.2 135 59.3
Dinv27164 Davidia involucrata HOM05D001235 ORTHO05D005684 4.0e-33 145.2 116 65.5
Gohir.A09G209000 Gossypium hirsutum HOM05D001235 ORTHO05D005684 4.0e-33 145.2 134 60.4
Lsat_1_v5_gn_1_69940 Lactuca sativa HOM05D001235 ORTHO05D005684 5.3e-33 144.8 112 67.9
Sc19g0007540 Simmondsia chinensis HOM05D001235 ORTHO05D005684 5.3e-33 144.8 140 56.4
CSS0015752 Camellia sinensis var. sinensis HOM05D001235 ORTHO05D005684 1.2e-32 143.7 111 66.7
Manes.05G194300 Manihot esculenta HOM05D001235 ORTHO05D005684 1.2e-32 143.7 127 63.8
Sed0003584 Sechium edule HOM05D001235 ORTHO05D005684 1.2e-32 143.7 103 68.9
Thecc.04G188100 Theobroma cacao HOM05D001235 ORTHO05D005684 1.2e-32 143.7 127 60.6
Sabra02G0178900 Salix brachista HOM05D001235 ORTHO05D005684 1.5e-32 143.3 105 70.5
THA.LOC104822294 Tarenaya hassleriana HOM05D001235 ORTHO05D005684 1.5e-32 143.3 98 73.5
TAR362G0786 Trochodendron aralioides HOM05D001235 ORTHO05D005684 1.5e-32 143.3 97 74.2
CSS0039330 Camellia sinensis var. sinensis HOM05D001235 ORTHO05D005684 2.0e-32 142.9 111 66.7
SalBow6G1240 Salvia bowleyana HOM05D001235 ORTHO05D005684 2.0e-32 142.9 111 67.6
THA.LOC104818773 Tarenaya hassleriana HOM05D001235 ORTHO05D005684 2.0e-32 142.9 98 73.5
ClCG07G015490 Citrullus lanatus HOM05D001235 ORTHO05D005684 3.4e-32 142.1 104 71.2
CANSAT78G1591 Cannabis sativa HOM05D001235 ORTHO05D005684 4.5e-32 141.7 122 62.3
Cc03_g10000 Coffea canephora HOM05D001235 ORTHO05D005684 5.8e-32 141.4 98 70.4
Hma1.2p1_0349F.1_g132360 Hydrangea macrophylla HOM05D001235 ORTHO05D005684 5.8e-32 141.4 130 56.9
PSO357G0146 Papaver somniferum HOM05D001235 ORTHO05D005684 5.8e-32 141.4 122 64.8
Haze_11704 Corylus avellana HOM05D001235 ORTHO05D005684 1.3e-31 140.2 130 60.0
vmacro20797 Vaccinium macrocarpon HOM05D001235 ORTHO05D005684 1.7e-31 139.8 94 76.6
COL.COLO4_08688 Corchorus olitorius HOM05D001235 ORTHO05D005684 2.2e-31 139.4 136 56.6
Rhsim01G0114000 Rhododendron simsii HOM05D001235 ORTHO05D005684 2.2e-31 139.4 99 73.7
Sabra14G0111700 Salix brachista HOM05D001235 ORTHO05D005684 2.2e-31 139.4 130 60.0
Carub.0006s2413 Capsella rubella HOM05D001235 ORTHO05D005684 3.8e-31 138.7 98 70.4
Ciclev10006658m.g Citrus clementina HOM05D001235 ORTHO05D005684 3.8e-31 138.7 139 56.1
BcaB07g29956 Brassica carinata HOM05D001235 ORTHO05D005684 4.9e-31 138.3 144 54.9
DCAR_027478 Daucus carota HOM05D001235 ORTHO05D005684 4.9e-31 138.3 132 59.1
Sp2g21450 Schrenkiella parvula HOM05D001235 ORTHO05D005684 4.9e-31 138.3 98 70.4
AL6G38320 Arabidopsis lyrata HOM05D001235 ORTHO05D005684 6.4e-31 137.9 98 70.4
BcaB04g19735 Brassica carinata HOM05D001235 ORTHO05D005684 6.4e-31 137.9 150 52.0
BcaC04g23619 Brassica carinata HOM05D001235 ORTHO05D005684 6.4e-31 137.9 97 71.1
AT5G26570 Arabidopsis thaliana HOM05D001235 ORTHO05D005684 8.4e-31 137.5 98 69.4
CDE07G1609 Ceratophyllum demersum HOM05D001235 ORTHO05D005684 8.4e-31 137.5 133 56.4
QL06p027955 Quercus lobata HOM05D001235 ORTHO05D005684 8.4e-31 137.5 109 69.7
Thhalv10003634m.g Eutrema salsugineum HOM05D001235 ORTHO05D005684 1.4e-30 136.7 98 69.4
Peaxi162Scf00286g00547 Petunia axillaris HOM05D001235 ORTHO05D005684 1.4e-30 136.7 138 58.7
HPP92_009959 Vanilla planifolia HOM05D001235 ORTHO05D005684 1.4e-30 136.7 141 51.8
CARHR187040 Cardamine hirsuta HOM05D001235 ORTHO05D005684 1.9e-30 136.3 110 63.6
AUR62018504 Chenopodium quinoa HOM05D001235 ORTHO05D005684 1.9e-30 136.3 94 71.3
PGR142G1880 Punica granatum HOM05D001235 ORTHO05D005684 1.9e-30 136.3 94 70.2
Hund19034 Selenicereus undatus HOM05D001235 ORTHO05D005684 1.9e-30 136.3 98 69.4
SEGI_29879 Sequoiadendron giganteum HOM05D001235 ORTHO05D005684 1.9e-30 136.3 101 69.3
Os12g0297500 Oryza sativa ssp. japonica HOM05D001235 ORTHO05D005684 3.2e-30 135.6 109 65.1
AUR62020915 Chenopodium quinoa HOM05D001235 ORTHO05D005684 5.5e-30 134.8 148 52.7
CDE04G0849 Ceratophyllum demersum HOM05D001235 ORTHO05D005684 9.3e-30 134.0 133 56.4
BcaC03g17860 Brassica carinata HOM05D001235 ORTHO05D005684 1.6e-29 133.3 98 67.3
Ah.04g149690 Amaranthus hybridus HOM05D001235 ORTHO05D005684 2.7e-29 132.5 94 69.1
SGA_v2.0_scaffold28G12047 Striga asiatica HOM05D001235 ORTHO05D005684 1.8e-28 129.8 137 53.3
EL10Ac3g07409 Beta vulgaris HOM05D001235 ORTHO05D005684 2.3e-28 129.4 101 66.3
Aqoxy5G00036 Aquilegia oxysepala HOM05D001235 ORTHO05D005684 3.9e-28 128.6 94 69.1
Nitab4.5_0012294g0010 Nicotiana tabacum HOM05D001235 ORTHO05D005684 3.9e-28 128.6 96 68.8
SMO146G0043 Selaginella moellendorffii HOM05D001235 ORTHO05D005684 3.9e-28 128.6 99 62.6
Mapoly0096s0069 Marchantia polymorpha HOM05D001235 ORTHO05D005684 5.1e-28 128.3 100 58.0
unitig_21.g20191 Utricularia gibba HOM05D001235 ORTHO05D005684 2.5e-27 125.9 84 73.8
Zm00001eb409850 Zea mays HOM05D001235 ORTHO05D005684 5.6e-27 124.8 84 72.6
A09p05840 Brassica napus HOM05D001235 ORTHO05D005684 3.7e-26 122.1 154 48.7
BraA09t36226Z Brassica rapa HOM05D001235 ORTHO05D005684 3.7e-26 122.1 154 48.7
C09p06430 Brassica napus HOM05D001235 ORTHO05D005684 4.8e-26 121.7 98 64.3
BolC9t53563H Brassica oleracea HOM05D001235 ORTHO05D005684 4.8e-26 121.7 98 64.3
Aa31LG11G10130 Aethionema arabicum HOM05D001235 ORTHO05D005684 8.2e-26 120.9 98 63.3
BcaC04g23551 Brassica carinata HOM05D001235 ORTHO05D005684 8.2e-26 120.9 98 63.3
C02p59020 Brassica napus HOM05D001235 ORTHO05D005684 8.2e-26 120.9 98 63.3
BolC2t11957H Brassica oleracea HOM05D001235 ORTHO05D005684 1.4e-25 120.2 104 59.6
CBR_g30239 Chara braunii HOM05D001235 ORTHO05D005684 1.4e-25 120.2 119 52.9
A02p39300 Brassica napus HOM05D001235 ORTHO05D005684 2.4e-25 119.4 98 62.2
BraA02t08895Z Brassica rapa HOM05D001235 ORTHO05D005684 2.4e-25 119.4 98 62.2
Pp3c18_14870 Physcomitrium patens HOM05D001235 ORTHO05D005684 1.5e-24 116.7 111 53.2
Lj6C311G3 Lonicera japonica HOM05D001235 ORTHO05D005684 1.2e-21 107.1 159 42.8
Pp3c14_19150 Physcomitrium patens HOM05D001235 ORTHO05D005684 6.0e-21 104.8 94 52.1
PRCOL_00000902 Prasinoderma coloniale HOM05D001235 ORTHO05D005684 1.8e-17 93.2 103 48.5
Cre17.g719900 Chlamydomonas reinhardtii HOM05D001235 ORTHO05D005684 2.1e-13 79.7 73 52.1
MCO13G077 Micromonas commoda HOM05D001235 ORTHO05D005684 4.6e-13 78.6 87 43.7
RcHm_v2.0_Chr4g0411251 Rosa chinensis HOM05D001235 ORTHO05D005684 1.7e-10 70.1 143 35.7
MCO05G382 Micromonas commoda HOM05D001235 ORTHO05D005684 1.5e-08 63.5 90 37.8
Pp3c17_18900 Physcomitrium patens HOM05D001235 ORTHO05D005684 3.4e-08 62.4 56 53.6
Hund06013 Selenicereus undatus HOM05D001366 ORTHO05D003220 7.7e-08 61.2 111 35.1
MCO16G355 Micromonas commoda HOM05D001235 ORTHO05D005684 3.8e-07 58.9 102 36.3
PGR119G2090 Punica granatum HOM05D001366 ORTHO05D003220 1.1e-06 57.4 107 32.7
Sc04g0009380 Simmondsia chinensis HOM05D001366 ORTHO05D003220 1.1e-06 57.4 95 33.7
CsaV3_5G031320 Cucumis sativus L. HOM05D001366 ORTHO05D003220 1.4e-06 57.0 126 31.0
DCAR_031129 Daucus carota HOM05D001366 ORTHO05D003220 1.4e-06 57.0 99 34.3
ClCG05G025580 Citrullus lanatus HOM05D001366 ORTHO05D003220 1.9e-06 56.6 80 40.0
Lalb_Chr16g0392241 Lupinus albus HOM05D001366 ORTHO05D003220 1.9e-06 56.6 122 32.8
Sed0006405 Sechium edule HOM05D001366 ORTHO05D003220 1.9e-06 56.6 126 31.7
MELO3C011972.2 Cucumis melo HOM05D001366 ORTHO05D003220 2.5e-06 56.2 80 38.8
Ah.02g130140 Amaranthus hybridus HOM05D001366 ORTHO05D003220 3.2e-06 55.8 96 36.5
EL10Ac6g13726 Beta vulgaris HOM05D001366 ORTHO05D003220 4.2e-06 55.5 107 34.6
AUR62005429 Chenopodium quinoa HOM05D001366 ORTHO05D003220 5.5e-06 55.1 93 37.6
AUR62014090 Chenopodium quinoa HOM05D001366 ORTHO05D003220 5.5e-06 55.1 101 37.6
DCAR_007066 Daucus carota HOM05D001366 ORTHO05D003220 7.2e-06 54.7 97 32.0
ATR0767G073 Amborella trichopoda HOM05D001366 ORTHO05D003220 9.4e-06 54.3 91 34.1
CANSAT01G0055 Cannabis sativa HOM05D001366 ORTHO05D003220 9.4e-06 54.3 99 34.3
Glyma.18G142500 Glycine max HOM05D001366 ORTHO05D003220 9.4e-06 54.3 80 38.8
Sed0024840 Sechium edule HOM05D001366 ORTHO05D003220 9.4e-06 54.3 80 37.5


User provided reference genes

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