Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G18874 Trifolium pratense HOM05D007784 ORTHO05D008654 9.1e-81 303.9 202 100.0
Psat4g131560 Pisum sativum HOM05D007784 ORTHO05D008654 1.0e-55 220.7 161 78.3
Medtr0598s0020 Medicago truncatula HOM05D007784 ORTHO05D008654 4.3e-46 188.7 161 69.6
Ca_23050_v3 Cicer arietinum L. HOM05D007784 ORTHO05D008654 8.7e-39 164.5 164 64.0
Lalb_Chr03g0030731 Lupinus albus HOM05D007784 ORTHO05D008654 1.1e-28 131.0 163 55.8
Glyma.12G163035 Glycine max HOM05D007784 ORTHO05D008654 1.2e-24 117.5 153 54.2
Glyma.06G238300 Glycine max HOM05D007784 ORTHO05D008654 2.1e-24 116.7 156 53.2
VMungo1127G1039 Vigna mungo HOM05D007784 ORTHO05D008654 2.7e-24 116.3 153 57.5
Lj3g0015921 Lotus japonicus HOM05D007784 ORTHO05D008654 1.0e-23 114.4 164 51.2
Phvul.011G165000 Phaseolus vulgaris HOM05D007784 ORTHO05D008654 7.4e-22 108.2 154 56.5
Lalb_Chr01g0006591 Lupinus albus HOM05D007784 ORTHO05D008654 4.8e-21 105.5 147 51.0
Gohir.D01G048300 Gossypium hirsutum HOM05D007784 ORTHO05D008654 4.5e-19 99.0 159 49.7
Gorai.002G068100 Gossypium raimondii HOM05D007784 ORTHO05D008654 4.5e-19 99.0 159 49.7
Gohir.A01G061700 Gossypium hirsutum HOM05D007784 ORTHO05D008654 5.8e-19 98.6 159 49.7
COL.COLO4_36703 Corchorus olitorius HOM05D007784 ORTHO05D008654 1.0e-18 97.8 162 47.5
ClCG11G017920 Citrullus lanatus HOM05D007784 ORTHO05D008654 3.8e-18 95.9 172 49.4
QL08p022546 Quercus lobata HOM05D007784 ORTHO05D008654 3.8e-18 95.9 164 48.2
Sabra16G0260800 Salix brachista HOM05D007784 ORTHO05D008654 3.8e-18 95.9 176 47.7
Cfa020564 Carpinus fangiana HOM05D007784 ORTHO05D008654 3.2e-17 92.8 167 46.1
Thecc.07G095100 Theobroma cacao HOM05D007784 ORTHO05D008654 3.2e-17 92.8 160 50.0
Potri.001G398000 Populus trichocarpa HOM05D007784 ORTHO05D008654 7.1e-17 91.7 160 47.5
Duzib268G0159 Durio zibethinus HOM05D007784 ORTHO05D008654 1.2e-16 90.9 158 49.4
Duzib213G0720 Durio zibethinus HOM05D007784 ORTHO05D008654 3.5e-16 89.4 160 46.2
Ciclev10010505m.g Citrus clementina HOM05D007784 ORTHO05D008654 5.1e-15 85.5 167 41.3
Atru.chr2.2433 Acer truncatum HOM05D007784 ORTHO05D008654 1.9e-14 83.6 180 40.0
Prupe.4G177000 Prunus persica HOM05D007784 ORTHO05D008654 3.3e-14 82.8 175 39.4
Hma1.2p1_0387F.1_g141980 Hydrangea macrophylla HOM05D007784 ORTHO05D008654 5.7e-14 82.0 160 46.2
Cpa.g.c36086 Carica papaya HOM05D007784 ORTHO05D008654 7.4e-14 81.6 173 41.6
Potri.011G116600 Populus trichocarpa HOM05D007784 ORTHO05D008654 7.4e-14 81.6 174 42.5
CiPaw.12G119800 Carya illinoinensis HOM05D007784 ORTHO05D008654 1.3e-13 80.9 166 41.6
CiPaw.11G171500 Carya illinoinensis HOM05D007784 ORTHO05D008654 1.6e-13 80.5 186 41.4
Peaxi162Scf00069g01710 Petunia axillaris HOM05D007784 ORTHO05D008654 1.6e-13 80.5 182 41.8
CSS0002410 Camellia sinensis var. sinensis HOM05D007784 ORTHO05D008654 2.1e-13 80.1 170 41.2
Cc05_g11830 Coffea canephora HOM05D007784 ORTHO05D008654 1.4e-12 77.4 172 44.2
FAN16G2579 Fragaria x ananassa HOM05D007784 ORTHO05D008654 1.8e-12 77.0 176 43.2
FvH4_3g19630 Fragaria vesca HOM05D007784 ORTHO05D008654 5.3e-12 75.5 176 38.6
FAN11G2265 Fragaria x ananassa HOM05D007784 ORTHO05D008654 5.3e-12 75.5 176 38.6
FAN21G3158 Fragaria x ananassa HOM05D007784 ORTHO05D008654 5.3e-12 75.5 176 38.6
Sabra11G0102100 Salix brachista HOM05D007784 ORTHO05D008654 1.2e-11 74.3 158 42.4
Haze_09448 Corylus avellana HOM05D007784 ORTHO05D008654 3.4e-11 72.8 127 47.2
Manes.03G106700 Manihot esculenta HOM05D007784 ORTHO05D008654 3.4e-11 72.8 179 35.8
Dinv14932 Davidia involucrata HOM05D007784 ORTHO05D008654 7.6e-11 71.6 81 54.3
AUR62036175 Chenopodium quinoa HOM05D007784 ORTHO05D008654 1.3e-10 70.9 185 37.8
MELO3C025600.2 Cucumis melo HOM05D007784 ORTHO05D008654 1.3e-10 70.9 180 40.6
MD03G1230800 Malus domestica HOM05D007784 ORTHO05D008654 1.3e-10 70.9 175 36.6
PGR083G0236 Punica granatum HOM05D007784 ORTHO05D008654 2.9e-10 69.7 164 42.7
Duzib170G0657 Durio zibethinus HOM05D007784 ORTHO05D008654 5.0e-10 68.9 143 45.5
RcHm_v2.0_Chr5g0032821 Rosa chinensis HOM05D007784 ORTHO05D008654 5.0e-10 68.9 176 38.1
Actinidia09697 Actinidia chinensis HOM05D007784 ORTHO05D008654 6.5e-10 68.6 161 39.1
Gohir.D13G151926 Gossypium hirsutum HOM05D007784 ORTHO05D008654 6.5e-10 68.6 167 41.3
Manes.15G088900 Manihot esculenta HOM05D007784 ORTHO05D008654 6.5e-10 68.6 169 37.9
Sc16g0007130 Simmondsia chinensis HOM05D007784 ORTHO05D008654 6.5e-10 68.6 169 39.1
PGR031G1623 Punica granatum HOM05D007784 ORTHO05D008654 3.2e-09 66.2 179 35.8
Gorai.013G169700 Gossypium raimondii HOM05D007784 ORTHO05D008654 4.2e-09 65.9 166 42.2
FAN25G3654 Fragaria x ananassa HOM05D007784 ORTHO05D008654 9.3e-09 64.7 176 37.5
Oeu051079.1 Olea europaea HOM05D007784 ORTHO05D008654 1.2e-08 64.3 158 36.7
CANSAT56G4083 Cannabis sativa HOM05D007784 ORTHO05D008654 1.6e-08 63.9 202 36.6
CAN.G162.41 Capsicum annuum HOM05D007784 ORTHO05D008654 2.7e-08 63.2 167 42.5
Rhsim06G0201400 Rhododendron simsii HOM05D007784 ORTHO05D008654 3.5e-08 62.8 87 47.1
THA.LOC104810461 Tarenaya hassleriana HOM05D009851 ORTHO05D008654 3.5e-08 62.8 171 35.7
AUR62019455 Chenopodium quinoa HOM05D007784 ORTHO05D008654 7.9e-08 61.6 96 43.8
CsaV3_4G033550 Cucumis sativus L. HOM05D007784 ORTHO05D008654 7.9e-08 61.6 92 46.7
BcaB07g33353 Brassica carinata HOM05D009851 ORTHO05D008654 1.0e-07 61.2 73 49.3
A06p01160 Brassica napus HOM05D009851 ORTHO05D008654 2.3e-07 60.1 85 47.1
BraA06t23343Z Brassica rapa HOM05D009851 ORTHO05D008654 2.3e-07 60.1 85 47.1
EL10Ac4g08222 Beta vulgaris HOM05D007784 ORTHO05D008654 3.0e-07 59.7 207 36.7
Thhalv10012165m.g Eutrema salsugineum HOM05D009851 ORTHO05D008654 3.0e-07 59.7 75 53.3
Sed0023140 Sechium edule HOM05D007784 ORTHO05D008654 3.0e-07 59.7 54 61.1
AL1G61530 Arabidopsis lyrata HOM05D009851 ORTHO05D008654 5.1e-07 58.9 121 39.7
Sp1g39710 Schrenkiella parvula HOM05D009851 ORTHO05D008654 5.1e-07 58.9 77 46.8
BcaC08g43508 Brassica carinata HOM05D009851 ORTHO05D008654 6.7e-07 58.5 125 36.8
C06p08940 Brassica napus HOM05D009851 ORTHO05D008654 6.7e-07 58.5 125 36.8
BolC6t35972H Brassica oleracea HOM05D009851 ORTHO05D008654 6.7e-07 58.5 125 36.8
SalBow8G3696 Salvia bowleyana HOM05D007784 ORTHO05D008654 6.7e-07 58.5 82 52.4
TWI38G0880 Tripterygium wilfordii HOM05D007784 ORTHO05D008654 8.7e-07 58.2 168 39.3
BcaB06g29548 Brassica carinata HOM05D009851 ORTHO05D008654 1.5e-06 57.4 70 54.3
AT1G53163 Arabidopsis thaliana HOM05D009851 ORTHO05D008654 1.9e-06 57.0 121 38.8
PSO541G4378 Papaver somniferum HOM05D007784 ORTHO05D008654 1.9e-06 57.0 78 46.2
AL3G27640 Arabidopsis lyrata HOM05D009851 ORTHO05D008654 3.3e-06 56.2 159 35.2
MSTRG.15239 Avicennia marina HOM05D007784 ORTHO05D008654 4.3e-06 55.8 164 35.4
CARHR090230 Cardamine hirsuta HOM05D009851 ORTHO05D008654 4.3e-06 55.8 147 37.4
Thhalv10021913m.g Eutrema salsugineum HOM05D009851 ORTHO05D008654 5.7e-06 55.5 75 46.7
AT3G15250 Arabidopsis thaliana HOM05D009851 ORTHO05D008654 9.7e-06 54.7 160 36.2
A05p34230 Brassica napus HOM05D009851 ORTHO05D008654 9.7e-06 54.7 147 35.4
BraA05t22243Z Brassica rapa HOM05D009851 ORTHO05D008654 9.7e-06 54.7 147 35.4


User provided reference genes

Program Settings