Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G1887 Trifolium pratense HOM05D004800 ORTHO05D005842 1.1e-114 416.8 228 100.0
Psat5g033480 Pisum sativum HOM05D004800 ORTHO05D005842 3.8e-91 338.6 212 83.0
Medtr3g105925 Medicago truncatula HOM05D004800 ORTHO05D005842 9.3e-90 334.0 230 81.3
Ca_15781_v3 Cicer arietinum L. HOM05D004800 ORTHO05D005842 6.2e-86 321.2 213 78.4
Lj1g0022737 Lotus japonicus HOM05D004800 ORTHO05D005842 5.7e-79 298.1 199 75.9
Phvul.009G086600 Phaseolus vulgaris HOM05D004800 ORTHO05D005842 8.8e-72 274.2 204 69.6
VMungo1309G1055 Vigna mungo HOM05D004800 ORTHO05D005842 1.3e-70 270.4 204 69.1
Dinv08182 Davidia involucrata HOM05D004800 ORTHO05D005842 5.0e-67 258.5 197 67.5
Dinv13413 Davidia involucrata HOM05D004800 ORTHO05D005842 1.9e-66 256.5 209 64.6
Thecc.09G015200 Theobroma cacao HOM05D004800 ORTHO05D005842 1.2e-65 253.8 198 65.2
COL.COLO4_18955 Corchorus olitorius HOM05D004800 ORTHO05D005842 3.9e-64 248.8 199 62.8
Glyma.06G061100 Glycine max HOM05D004800 ORTHO05D005842 3.9e-64 248.8 211 63.0
Cpa.g.sc148.17 Carica papaya HOM05D004800 ORTHO05D005842 5.1e-64 248.4 199 64.3
Hma1.2p1_0389F.1_g142470 Hydrangea macrophylla HOM05D004800 ORTHO05D005842 1.5e-63 246.9 209 61.2
Haze_21408 Corylus avellana HOM05D004800 ORTHO05D005842 4.4e-63 245.4 197 65.0
Duzib168G1619 Durio zibethinus HOM05D004800 ORTHO05D005842 1.7e-62 243.4 210 62.9
Cfa013047 Carpinus fangiana HOM05D004800 ORTHO05D005842 2.2e-62 243.0 197 65.0
Gorai.009G063300 Gossypium raimondii HOM05D004800 ORTHO05D005842 8.2e-62 241.1 197 62.4
Gohir.D05G062200 Gossypium hirsutum HOM05D004800 ORTHO05D005842 1.1e-61 240.7 197 62.4
Gohir.A05G060000 Gossypium hirsutum HOM05D004800 ORTHO05D005842 1.8e-61 240.0 197 62.4
Manes.03G008100 Manihot esculenta HOM05D004800 ORTHO05D005842 3.1e-61 239.2 199 62.3
CSS0020729 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 7.0e-61 238.0 197 64.5
CSS0041988 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 7.0e-61 238.0 197 64.5
Rhsim07G0165700 Rhododendron simsii HOM05D004800 ORTHO05D005842 7.0e-61 238.0 199 62.3
TAR625G0162 Trochodendron aralioides HOM05D004800 ORTHO05D005842 1.2e-60 237.3 211 58.3
arahy.Tifrunner.gnm1.ann1.D8NHAG Arachis hypogaea HOM05D004800 ORTHO05D005842 1.5e-60 236.9 199 65.3
vmacro05151 Vaccinium macrocarpon HOM05D004800 ORTHO05D005842 2.0e-60 236.5 195 63.1
Lalb_Chr11g0063501 Lupinus albus HOM05D004800 ORTHO05D005842 4.5e-60 235.3 168 72.0
TAR625G0311 Trochodendron aralioides HOM05D004800 ORTHO05D005842 1.0e-59 234.2 211 57.8
Prupe.1G394400 Prunus persica HOM05D004800 ORTHO05D005842 1.3e-59 233.8 195 61.5
CiPaw.08G005800 Carya illinoinensis HOM05D004800 ORTHO05D005842 1.7e-59 233.4 197 62.9
Manes.16G130200 Manihot esculenta HOM05D004800 ORTHO05D005842 1.7e-59 233.4 197 59.4
Lj7A735T34 Lonicera japonica HOM05D004800 ORTHO05D005842 2.2e-59 233.0 202 61.4
FAN20G2958 Fragaria x ananassa HOM05D004800 ORTHO05D005842 2.9e-59 232.6 192 62.5
FAN27G0477 Fragaria x ananassa HOM05D004800 ORTHO05D005842 8.5e-59 231.1 192 62.0
CSS0021373 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 1.1e-58 230.7 182 67.0
Ciclev10009140m.g Citrus clementina HOM05D004800 ORTHO05D005842 1.1e-58 230.7 197 58.9
DCAR_022862 Daucus carota HOM05D004800 ORTHO05D005842 1.5e-58 230.3 202 61.4
CANSAT25G3039 Cannabis sativa HOM05D004800 ORTHO05D005842 4.2e-58 228.8 208 61.1
Sed0002840 Sechium edule HOM05D004800 ORTHO05D005842 4.2e-58 228.8 199 60.3
Eucgr.C02606 Eucalyptus grandis HOM05D004800 ORTHO05D005842 5.5e-58 228.4 199 61.3
FvH4_2g41170 Fragaria vesca HOM05D004800 ORTHO05D005842 7.2e-58 228.0 192 61.5
Hund02986 Selenicereus undatus HOM05D004800 ORTHO05D005842 9.4e-58 227.6 199 57.8
Eucgr.L02918 Eucalyptus grandis HOM05D004800 ORTHO05D005842 1.2e-57 227.3 199 60.8
TWI34G0615 Tripterygium wilfordii HOM05D004800 ORTHO05D005842 1.2e-57 227.3 196 58.7
Sabra06G0206800 Salix brachista HOM05D004800 ORTHO05D005842 1.6e-57 226.9 196 60.2
Potri.006G264700 Populus trichocarpa HOM05D004800 ORTHO05D005842 2.1e-57 226.5 196 59.7
THA.LOC104814986 Tarenaya hassleriana HOM05D004800 ORTHO05D005842 3.6e-57 225.7 199 56.3
GSVIVG01035974001 Vitis vinifera HOM05D004800 ORTHO05D005842 4.7e-57 225.3 178 61.8
HanXRQChr13g0411011 Helianthus annuus HOM05D004800 ORTHO05D005842 8.0e-57 224.6 200 59.5
TWI32G1317 Tripterygium wilfordii HOM05D004800 ORTHO05D005842 8.0e-57 224.6 196 59.2
PSO384G2235 Papaver somniferum HOM05D004800 ORTHO05D005842 1.0e-56 224.2 209 54.1
PSO339G1021 Papaver somniferum HOM05D004800 ORTHO05D005842 1.4e-56 223.8 209 53.6
RcHm_v2.0_Chr6g0299361 Rosa chinensis HOM05D004800 ORTHO05D005842 3.0e-56 222.6 204 56.9
AUR62032420 Chenopodium quinoa HOM05D004800 ORTHO05D005842 8.8e-56 221.1 200 59.0
MSTRG.25830 Avicennia marina HOM05D004800 ORTHO05D005842 1.1e-55 220.7 211 54.5
Lsat_1_v5_gn_5_49760 Lactuca sativa HOM05D004800 ORTHO05D005842 3.3e-55 219.2 198 59.1
Atru.chr7.2559 Acer truncatum HOM05D004800 ORTHO05D005842 4.4e-55 218.8 196 57.7
AUR62024801 Chenopodium quinoa HOM05D004800 ORTHO05D005842 7.4e-55 218.0 200 58.0
PGR044G1902 Punica granatum HOM05D004800 ORTHO05D005842 7.4e-55 218.0 205 59.0
Sabra18G0021000 Salix brachista HOM05D004800 ORTHO05D005842 9.7e-55 217.6 206 55.8
EL10Ac2g02494 Beta vulgaris HOM05D004800 ORTHO05D005842 2.2e-54 216.5 199 57.8
A06p35840 Brassica napus HOM05D004800 ORTHO05D005842 2.2e-54 216.5 200 54.0
BraA06t26509Z Brassica rapa HOM05D004800 ORTHO05D005842 2.2e-54 216.5 200 54.0
QL02p018802 Quercus lobata HOM05D004800 ORTHO05D005842 2.2e-54 216.5 197 57.4
Aqoxy7G03382 Aquilegia oxysepala HOM05D004800 ORTHO05D005842 2.8e-54 216.1 200 58.0
Sc09g0010680 Simmondsia chinensis HOM05D004800 ORTHO05D005842 2.8e-54 216.1 188 58.0
Cc08_g07200 Coffea canephora HOM05D004800 ORTHO05D005842 8.2e-54 214.5 200 58.0
Sp2g22450 Schrenkiella parvula HOM05D004800 ORTHO05D005842 1.4e-53 213.8 200 53.5
Oeu009650.1 Olea europaea HOM05D004800 ORTHO05D005842 2.4e-53 213.0 199 54.8
BcaNung02298 Brassica carinata HOM05D004800 ORTHO05D005842 4.1e-53 212.2 201 52.7
AT5G25080 Arabidopsis thaliana HOM05D004800 ORTHO05D005842 9.1e-53 211.1 198 52.5
Oeu001621.3 Olea europaea HOM05D004800 ORTHO05D005842 9.1e-53 211.1 199 53.3
arahy.Tifrunner.gnm1.ann1.1BAV2G Arachis hypogaea HOM05D004800 ORTHO05D005842 1.6e-52 210.3 199 60.3
BcaNung03198 Brassica carinata HOM05D004800 ORTHO05D005842 3.5e-52 209.1 208 51.0
Actinidia14132 Actinidia chinensis HOM05D004800 ORTHO05D005842 5.9e-52 208.4 206 59.2
Nitab4.5_0010613g0010 Nicotiana tabacum HOM05D004800 ORTHO05D005842 5.9e-52 208.4 228 51.3
Migut.A00358 Erythranthe guttata HOM05D004800 ORTHO05D005842 1.7e-51 206.8 210 52.4
AL6G36710 Arabidopsis lyrata HOM05D004800 ORTHO05D005842 1.1e-50 204.1 200 52.5
Solyc07g008750.4 Solanum lycopersicum HOM05D004800 ORTHO05D005842 1.1e-50 204.1 200 54.0
Carub.0006s2291 Capsella rubella HOM05D004800 ORTHO05D005842 1.5e-50 203.8 200 52.0
Sopen07g004690 Solanum pennellii HOM05D004800 ORTHO05D005842 2.5e-50 203.0 200 54.0
SGA_v2.0_scaffold147G36341 Striga asiatica HOM05D004800 ORTHO05D005842 4.2e-50 202.2 199 52.3
MD08G1055900 Malus domestica HOM05D004800 ORTHO05D005842 5.5e-50 201.8 195 54.4
Actinidia23108 Actinidia chinensis HOM05D004800 ORTHO05D005842 7.2e-50 201.4 207 57.0
ATR0580G220 Amborella trichopoda HOM05D004800 ORTHO05D005842 9.4e-50 201.1 196 53.6
CsaV3_4G036490 Cucumis sativus L. HOM05D004800 ORTHO05D005842 1.2e-49 200.7 199 55.3
BolC7t44804H Brassica oleracea HOM05D004800 ORTHO05D005842 3.6e-49 199.1 224 47.3
BraA09t36276Z Brassica rapa HOM05D004800 ORTHO05D005842 3.6e-49 199.1 210 52.9
C07p42740 Brassica napus HOM05D004800 ORTHO05D005842 4.7e-49 198.7 224 46.9
MELO3C016954.2 Cucumis melo HOM05D004800 ORTHO05D005842 4.7e-49 198.7 199 54.3
PGSC0003DMG401028727 Solanum tuberosum HOM05D004800 ORTHO05D005842 4.7e-49 198.7 200 53.0
HPP92_017174 Vanilla planifolia HOM05D004800 ORTHO05D005842 4.7e-49 198.7 210 47.1
CAN.G333.3 Capsicum annuum HOM05D004800 ORTHO05D005842 6.1e-49 198.4 198 54.0
ClCG05G016220 Citrullus lanatus HOM05D004800 ORTHO05D005842 1.0e-48 197.6 188 55.3
SalBow4G3208 Salvia bowleyana HOM05D004800 ORTHO05D005842 1.0e-48 197.6 210 51.9
BcaC04g23570 Brassica carinata HOM05D004800 ORTHO05D005842 2.3e-48 196.4 210 51.9
C09p07000 Brassica napus HOM05D004800 ORTHO05D005842 2.3e-48 196.4 210 51.9
A09p06310 Brassica napus HOM05D004800 ORTHO05D005842 4.0e-48 195.7 210 51.9
BcaNung06718 Brassica carinata HOM05D004800 ORTHO05D005842 5.2e-48 195.3 186 52.2
CANSAT35G0701 Cannabis sativa HOM05D004800 ORTHO05D005842 6.8e-48 194.9 205 52.7
Peaxi162Scf00006g00249 Petunia axillaris HOM05D004800 ORTHO05D005842 2.0e-47 193.4 198 53.0
Thhalv10004902m.g Eutrema salsugineum HOM05D004800 ORTHO05D005842 2.6e-47 193.0 211 48.3
CARHR188420 Cardamine hirsuta HOM05D004800 ORTHO05D005842 8.3e-46 188.0 201 49.3
BolC9t53616H Brassica oleracea HOM05D004800 ORTHO05D005842 1.1e-45 187.6 209 50.2
unitig_749.g13819 Utricularia gibba HOM05D004800 ORTHO05D005842 1.4e-45 187.2 199 49.7
CDE02G3876 Ceratophyllum demersum HOM05D004800 ORTHO05D005842 1.6e-44 183.7 193 53.4
Aa31LG11G4300 Aethionema arabicum HOM05D004800 ORTHO05D005842 2.0e-44 183.3 199 45.7
ECA240G1139 Erigeron canadensis HOM05D004800 ORTHO05D005842 5.0e-43 178.7 146 61.0
Nn2g12411 Nelumbo nucifera HOM05D004800 ORTHO05D005842 3.4e-39 166.0 141 58.2
Phvul.001G041300 Phaseolus vulgaris HOM05D004800 ORTHO05D005842 3.5e-36 156.0 212 44.3
SHI21074 Sapria himalayana HOM05D004800 ORTHO05D005842 5.9e-36 155.2 215 41.4
arahy.Tifrunner.gnm1.ann1.D9UBCD Arachis hypogaea HOM05D004800 ORTHO05D005842 1.0e-35 154.5 213 46.9
BcaB04g19808 Brassica carinata HOM05D004800 ORTHO05D005842 3.8e-35 152.5 206 45.1
Lj5g0013304 Lotus japonicus HOM05D004800 ORTHO05D005842 1.1e-34 151.0 210 44.8
arahy.Tifrunner.gnm1.ann1.CUZL6Q Arachis hypogaea HOM05D004800 ORTHO05D005842 1.5e-34 150.6 213 46.0
arahy.Tifrunner.gnm1.ann1.N4WP0Z Arachis hypogaea HOM05D004800 ORTHO05D005842 1.5e-34 150.6 213 46.0
Os08g0270200 Oryza sativa ssp. japonica HOM05D004800 ORTHO05D005842 1.5e-34 150.6 202 40.1
VMungo0647G1387 Vigna mungo HOM05D004800 ORTHO05D005842 2.5e-34 149.8 212 45.8
arahy.Tifrunner.gnm1.ann1.YE5PM3 Arachis hypogaea HOM05D004800 ORTHO05D005842 1.6e-33 147.1 213 45.1
MBI14_g09103_MAGBIO Magnolia biondii HOM05D004800 ORTHO05D005842 2.1e-33 146.7 209 43.1
Zm00001eb177850 Zea mays HOM05D004800 ORTHO05D005842 2.1e-33 146.7 201 41.3
Peaxi162Scf01038g00137 Petunia axillaris HOM05D004800 ORTHO05D005842 1.2e-31 141.0 122 61.5
Potri.018G018100 Populus trichocarpa HOM05D004800 ORTHO05D005842 3.4e-31 139.4 118 62.7
Glyma.14G101700 Glycine max HOM05D004800 ORTHO05D005842 1.8e-29 133.7 213 41.8
TPR.G38911 Trifolium pratense HOM05D004800 ORTHO05D005842 5.0e-27 125.6 198 42.4
unitig_26.g9784 Utricularia gibba HOM05D004800 ORTHO05D005842 8.6e-27 124.8 193 39.9
Nitab4.5_0000617g0080 Nicotiana tabacum HOM05D004800 ORTHO05D005842 1.5e-26 124.0 83 69.9
Mapoly0130s0032 Marchantia polymorpha HOM05D004800 ORTHO05D005842 3.1e-24 116.3 182 35.2
Psat6g026000 Pisum sativum HOM05D004800 ORTHO05D005842 3.1e-24 116.3 195 41.0
Medtr1g014130 Medicago truncatula HOM05D004800 ORTHO05D005842 2.4e-21 106.7 194 39.7
SMO140G0030 Selaginella moellendorffii HOM05D004800 ORTHO05D005842 3.3e-18 96.3 192 34.4
AagrBONN_evm.TU.Sc2ySwM_368.3173 Anthoceros agrestis HOM05D004800 ORTHO05D005842 4.3e-18 95.9 177 33.3
TPR.G28957 Trifolium pratense HOM05D000201 ORTHO05D000421 2.1e-17 93.6 64 78.1
Pp3c2_14120 Physcomitrium patens HOM05D004800 ORTHO05D005842 4.7e-17 92.4 172 33.7
TPR.G31499 Trifolium pratense HOM05D000201 ORTHO05D016113 1.4e-13 80.9 64 71.9
Lalb_Chr24g0401961 Lupinus albus HOM05D004800 ORTHO05D005842 3.5e-12 76.3 85 43.5
arahy.Tifrunner.gnm1.ann1.Y76JQK Arachis hypogaea HOM05D004800 ORTHO05D005842 1.3e-11 74.3 201 33.8
SEGI_18119 Sequoiadendron giganteum HOM05D004800 ORTHO05D005842 1.1e-10 71.2 94 35.1
Zm00001eb353150 Zea mays HOM05D004800 ORTHO05D005842 6.2e-09 65.5 142 35.9
CBR_g8579 Chara braunii HOM05D004800 ORTHO05D005842 4.0e-08 62.8 160 28.8
Sopen01g020190 Solanum pennellii HOM05D004800 ORTHO05D005842 4.4e-07 59.3 72 51.4
Sed0015580 Sechium edule HOM05D004800 ORTHO05D005842 1.7e-06 57.4 62 41.9
Sopen01g040360 Solanum pennellii HOM05D004800 ORTHO05D005842 1.7e-06 57.4 72 48.6
Sopen07g026310 Solanum pennellii HOM05D004800 ORTHO05D005842 1.7e-06 57.4 72 48.6
Sopen11g020420 Solanum pennellii HOM05D004800 ORTHO05D010331 6.4e-06 55.5 62 53.2


User provided reference genes

Program Settings