Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G18842 Trifolium pratense HOM05D004962 ORTHO05D006249 2.1e-85 318.9 155 100.0
VMungo0720G3109 Vigna mungo HOM05D004962 ORTHO05D006249 7.9e-32 141.0 69 94.2
Glyma.10G270300 Glycine max HOM05D004962 ORTHO05D006249 2.3e-31 139.4 69 94.2
Medtr1g109490 Medicago truncatula HOM05D004962 ORTHO05D006249 3.9e-31 138.7 69 94.2
Glyma.20G121000 Glycine max HOM05D004962 ORTHO05D006249 5.1e-31 138.3 69 92.8
Lj5g0019473 Lotus japonicus HOM05D004962 ORTHO05D006249 1.1e-30 137.1 75 89.3
arahy.Tifrunner.gnm1.ann1.HFR8A2 Arachis hypogaea HOM05D004962 ORTHO05D006249 1.9e-30 136.3 68 92.6
arahy.Tifrunner.gnm1.ann1.I79V4W Arachis hypogaea HOM05D004962 ORTHO05D006249 1.9e-30 136.3 68 92.6
Ca_06893_v3 Cicer arietinum L. HOM05D004962 ORTHO05D006249 2.5e-30 136.0 69 92.8
Phvul.007G032400 Phaseolus vulgaris HOM05D004962 ORTHO05D006249 4.3e-30 135.2 69 89.9
BcaC08g43144 Brassica carinata HOM05D004962 ORTHO05D006249 7.4e-30 134.4 72 84.7
C06p04260 Brassica napus HOM05D004962 ORTHO05D006249 7.4e-30 134.4 72 84.7
BolC6t35550H Brassica oleracea HOM05D004962 ORTHO05D006249 7.4e-30 134.4 72 84.7
Thhalv10011237m.g Eutrema salsugineum HOM05D004962 ORTHO05D006249 9.6e-30 134.0 72 83.3
Psat6g224120 Pisum sativum HOM05D004962 ORTHO05D006249 9.6e-30 134.0 69 91.3
BcaB04g17325 Brassica carinata HOM05D004962 ORTHO05D006249 1.3e-29 133.7 72 84.7
Lalb_Chr06g0165831 Lupinus albus HOM05D004962 ORTHO05D006249 1.3e-29 133.7 69 88.4
Atru.chr11.243 Acer truncatum HOM05D004962 ORTHO05D006249 1.6e-29 133.3 72 83.3
AL1G56890 Arabidopsis lyrata HOM05D004962 ORTHO05D006249 1.6e-29 133.3 69 87.0
AT1G49540 Arabidopsis thaliana HOM05D004962 ORTHO05D006249 1.6e-29 133.3 69 87.0
A06p03820 Brassica napus HOM05D004962 ORTHO05D006249 1.6e-29 133.3 72 83.3
BraA06t23589Z Brassica rapa HOM05D004962 ORTHO05D006249 1.6e-29 133.3 72 83.3
Sp1g36410 Schrenkiella parvula HOM05D004962 ORTHO05D006249 2.1e-29 132.9 72 81.9
CARHR039570 Cardamine hirsuta HOM05D004962 ORTHO05D006249 2.8e-29 132.5 69 87.0
MSTRG.2215 Avicennia marina HOM05D004962 ORTHO05D006249 6.2e-29 131.3 72 83.3
Ciclev10014261m.g Citrus clementina HOM05D004962 ORTHO05D006249 8.1e-29 131.0 72 81.9
BcaB07g33669 Brassica carinata HOM05D004962 ORTHO05D006249 1.1e-28 130.6 72 83.3
Gohir.A10G178200 Gossypium hirsutum HOM05D004962 ORTHO05D006249 1.1e-28 130.6 70 84.3
Gohir.D10G184801 Gossypium hirsutum HOM05D004962 ORTHO05D006249 1.1e-28 130.6 70 84.3
Gorai.011G207200 Gossypium raimondii HOM05D004962 ORTHO05D006249 1.1e-28 130.6 70 84.3
Nitab4.5_0002112g0120 Nicotiana tabacum HOM05D004962 ORTHO05D006249 1.4e-28 130.2 77 79.2
Carub.0001s3872 Capsella rubella HOM05D004962 ORTHO05D006249 2.4e-28 129.4 69 82.6
DCAR_007266 Daucus carota HOM05D004962 ORTHO05D006249 2.4e-28 129.4 72 81.9
Aa31LG10G4460 Aethionema arabicum HOM05D004962 ORTHO05D006249 3.1e-28 129.0 78 76.9
TWI31G0370 Tripterygium wilfordii HOM05D004962 ORTHO05D006249 3.1e-28 129.0 69 85.5
Cpa.g.sc65.71 Carica papaya HOM05D004962 ORTHO05D006249 4.0e-28 128.6 73 78.1
Sopen06g003160 Solanum pennellii HOM05D004962 ORTHO05D006249 4.0e-28 128.6 74 81.1
Duzib248G1599 Durio zibethinus HOM05D004962 ORTHO05D006249 5.3e-28 128.3 73 80.8
Nitab4.5_0000694g0070 Nicotiana tabacum HOM05D004962 ORTHO05D006249 6.9e-28 127.9 77 77.9
Thecc.02G221200 Theobroma cacao HOM05D004962 ORTHO05D006249 6.9e-28 127.9 73 79.5
EL10Ac6g14300 Beta vulgaris HOM05D004962 ORTHO05D006249 9.0e-28 127.5 72 80.6
PGSC0003DMG400031444 Solanum tuberosum HOM05D004962 ORTHO05D006249 9.0e-28 127.5 69 85.5
Actinidia14925 Actinidia chinensis HOM05D004962 ORTHO05D006249 1.2e-27 127.1 72 77.8
SalBow8G2488 Salvia bowleyana HOM05D004962 ORTHO05D006249 2.0e-27 126.3 89 70.8
Aqoxy3G04030 Aquilegia oxysepala HOM05D004962 ORTHO05D006249 3.4e-27 125.6 72 79.2
Rhsim09G0103500 Rhododendron simsii HOM05D004962 ORTHO05D006249 3.4e-27 125.6 72 77.8
Sc04g0005990 Simmondsia chinensis HOM05D004962 ORTHO05D006249 3.4e-27 125.6 69 81.2
HanXRQChr08g0213241 Helianthus annuus HOM05D004962 ORTHO05D006249 4.5e-27 125.2 69 79.7
Ah.03g138470 Amaranthus hybridus HOM05D004962 ORTHO05D006249 5.8e-27 124.8 81 70.4
Sabra10G0090000 Salix brachista HOM05D004962 ORTHO05D006249 5.8e-27 124.8 69 81.2
Potri.010G119600 Populus trichocarpa HOM05D004962 ORTHO05D006249 7.6e-27 124.4 69 81.2
Solyc06g008310.3 Solanum lycopersicum HOM05D004962 ORTHO05D006249 7.6e-27 124.4 69 84.1
Lj3A879T38 Lonicera japonica HOM05D004962 ORTHO05D006249 1.0e-26 124.0 69 79.7
Peaxi162Scf00179g00544 Petunia axillaris HOM05D004962 ORTHO05D006249 1.0e-26 124.0 72 80.6
THA.LOC104811357 Tarenaya hassleriana HOM05D004962 ORTHO05D006249 1.0e-26 124.0 69 81.2
PSO063G7634 Papaver somniferum HOM05D004962 ORTHO05D006249 1.3e-26 123.6 77 72.7
PSO782G5688 Papaver somniferum HOM05D004962 ORTHO05D006249 1.3e-26 123.6 77 72.7
PGSC0003DMG400025502 Solanum tuberosum HOM05D004962 ORTHO05D006249 1.3e-26 123.6 69 84.1
AUR62014113 Chenopodium quinoa HOM05D004962 ORTHO05D006249 2.9e-26 122.5 68 80.9
Dinv31591 Davidia involucrata HOM05D004962 ORTHO05D006249 2.9e-26 122.5 69 81.2
Migut.E00376 Erythranthe guttata HOM05D004962 ORTHO05D006249 2.9e-26 122.5 72 77.8
unitig_699.g19525 Utricularia gibba HOM05D004962 ORTHO05D006249 2.9e-26 122.5 72 75.0
TAR371G0924 Trochodendron aralioides HOM05D004962 ORTHO05D006249 3.8e-26 122.1 69 79.7
GSVIVG01011835001 Vitis vinifera HOM05D004962 ORTHO05D006249 3.8e-26 122.1 68 80.9
CSS0022436 Camellia sinensis var. sinensis HOM05D004962 ORTHO05D006249 4.9e-26 121.7 69 79.7
CSS0034119 Camellia sinensis var. sinensis HOM05D004962 ORTHO05D006249 4.9e-26 121.7 69 79.7
Eucgr.G02236 Eucalyptus grandis HOM05D004962 ORTHO05D006249 4.9e-26 121.7 71 76.1
Nn4g23964 Nelumbo nucifera HOM05D004962 ORTHO05D006249 4.9e-26 121.7 72 80.6
CANSAT01G1665 Cannabis sativa HOM05D004962 ORTHO05D006249 6.5e-26 121.3 71 80.3
Haze_00658 Corylus avellana HOM05D004962 ORTHO05D006249 6.5e-26 121.3 70 75.7
PGSC0003DMG400024407 Solanum tuberosum HOM05D004962 ORTHO05D006249 6.5e-26 121.3 69 81.2
Hund20741 Selenicereus undatus HOM05D004962 ORTHO05D006249 8.4e-26 120.9 72 76.4
Manes.14G107300 Manihot esculenta HOM05D004962 ORTHO05D006249 1.1e-25 120.6 79 70.9
Dinv16141 Davidia involucrata HOM05D004962 ORTHO05D006249 1.4e-25 120.2 68 80.9
TAR371G0959 Trochodendron aralioides HOM05D004962 ORTHO05D006249 1.4e-25 120.2 69 78.3
PGR119G1728 Punica granatum HOM05D004962 ORTHO05D006249 4.2e-25 118.6 76 69.7
QL01p010697 Quercus lobata HOM05D004962 ORTHO05D006249 4.2e-25 118.6 69 78.3
QL01p010772 Quercus lobata HOM05D004962 ORTHO05D006249 4.2e-25 118.6 69 78.3
Sed0022508 Sechium edule HOM05D004962 ORTHO05D006249 4.2e-25 118.6 72 73.6
FAN17G1054 Fragaria x ananassa HOM05D004962 ORTHO05D006249 5.5e-25 118.2 70 78.6
FAN07G0368 Fragaria x ananassa HOM05D004962 ORTHO05D006249 7.1e-25 117.9 69 78.3
vmacro10603 Vaccinium macrocarpon HOM05D004962 ORTHO05D006249 7.1e-25 117.9 90 66.7
MELO3C012277.2 Cucumis melo HOM05D004962 ORTHO05D006249 9.3e-25 117.5 69 78.3
ECA233G5272 Erigeron canadensis HOM05D004962 ORTHO05D006249 9.3e-25 117.5 69 76.8
Oeu048367.1 Olea europaea HOM05D004962 ORTHO05D006249 1.2e-24 117.1 71 74.6
FvH4_4g26660 Fragaria vesca HOM05D004962 ORTHO05D006249 1.6e-24 116.7 69 78.3
FAN12G0536 Fragaria x ananassa HOM05D004962 ORTHO05D006249 1.6e-24 116.7 69 78.3
FAN12G3194 Fragaria x ananassa HOM05D004962 ORTHO05D006249 1.6e-24 116.7 69 78.3
FAN22G2325 Fragaria x ananassa HOM05D004962 ORTHO05D006249 1.6e-24 116.7 69 78.3
RcHm_v2.0_Chr4g0434371 Rosa chinensis HOM05D004962 ORTHO05D006249 1.6e-24 116.7 69 78.3
CiPaw.05G242900 Carya illinoinensis HOM05D004962 ORTHO05D006249 2.1e-24 116.3 65 81.5
CsaV3_5G034620 Cucumis sativus L. HOM05D004962 ORTHO05D006249 2.1e-24 116.3 69 76.8
Lsat_1_v5_gn_8_42541 Lactuca sativa HOM05D004962 ORTHO05D006249 2.1e-24 116.3 68 76.5
Cc11_g09620 Coffea canephora HOM05D004962 ORTHO05D006249 2.7e-24 115.9 69 75.4
ClCG05G022460 Citrullus lanatus HOM05D004962 ORTHO05D006249 3.5e-24 115.5 69 76.8
Prupe.1G317200 Prunus persica HOM05D004962 ORTHO05D006249 6.0e-24 114.8 71 74.6
AUR62002806 Chenopodium quinoa HOM05D004962 ORTHO05D006249 1.0e-23 114.0 63 81.0
SGA_v2.0_scaffold170G38808 Striga asiatica HOM05D004962 ORTHO05D006249 1.0e-23 114.0 94 63.8
SHI16242 Sapria himalayana HOM05D004962 ORTHO05D006249 1.8e-23 113.2 69 71.0
MD13G1035000 Malus domestica HOM05D004962 ORTHO05D006249 2.3e-23 112.8 71 73.2
C08p04020 Brassica napus HOM05D004962 ORTHO05D006249 3.9e-23 112.1 60 85.0
ATR0759G035 Amborella trichopoda HOM05D004962 ORTHO05D006249 5.7e-22 108.2 74 66.2
MD07G1142000 Malus domestica HOM05D004962 ORTHO05D006249 5.7e-22 108.2 68 73.5
MD16G1036900 Malus domestica HOM05D004962 ORTHO05D006249 5.7e-22 108.2 68 73.5
Os08g0493900 Oryza sativa ssp. japonica HOM05D004962 ORTHO05D006249 2.1e-21 106.3 69 66.7
CDE06G0233 Ceratophyllum demersum HOM05D004962 ORTHO05D006249 4.8e-21 105.1 68 67.6
Zm00001eb033820 Zea mays HOM05D004962 ORTHO05D006249 1.1e-20 104.0 70 65.7
MBI09_g25150_MAGBIO Magnolia biondii HOM05D004962 ORTHO05D006249 1.5e-19 100.1 72 65.3
SEGI_09159 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 5.8e-19 98.2 80 60.0
COL.COLO4_32127 Corchorus olitorius HOM05D004962 ORTHO05D006249 1.2e-16 90.5 75 60.0
Mapoly0064s0032 Marchantia polymorpha HOM05D004962 ORTHO05D006249 6.1e-16 88.2 64 60.9
Pp3c16_8750 Physcomitrium patens HOM05D004962 ORTHO05D005286 4.1e-12 75.5 57 52.6
Sed0004719 Sechium edule HOM05D004962 ORTHO05D006249 5.3e-12 75.1 68 54.4
SMO364G0112 Selaginella moellendorffii HOM05D004962 ORTHO05D006249 7.2e-09 64.7 83 39.8


User provided reference genes

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