Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G18837 Trifolium pratense HOM05D002451 ORTHO05D005601 4.3e-37 157.5 82 100.0
Psat5g295800 Pisum sativum HOM05D002451 ORTHO05D005601 1.4e-27 125.9 73 91.8
TPR.G6596 Trifolium pratense HOM05D002451 ORTHO05D005601 1.4e-27 125.9 73 91.8
Medtr2g100870 Medicago truncatula HOM05D002451 ORTHO05D005601 2.6e-26 121.7 73 89.0
Medtr5g085950 Medicago truncatula HOM05D002451 ORTHO05D005601 1.3e-22 109.4 73 82.2
Glyma.13G354600 Glycine max HOM05D002451 ORTHO05D005601 2.3e-22 108.6 73 72.6
arahy.Tifrunner.gnm1.ann1.65X03I Arachis hypogaea HOM05D002451 ORTHO05D005601 1.9e-21 105.5 73 69.9
Ca_01165_v3 Cicer arietinum L. HOM05D002451 ORTHO05D005601 2.5e-21 105.1 66 81.8
arahy.Tifrunner.gnm1.ann1.T566S8 Arachis hypogaea HOM05D002451 ORTHO05D005601 3.3e-21 104.8 73 69.9
Lj1g0009957 Lotus japonicus HOM05D002451 ORTHO05D005601 3.3e-21 104.8 73 72.6
Phvul.005G166100 Phaseolus vulgaris HOM05D002451 ORTHO05D005601 3.3e-21 104.8 73 71.2
CiPaw.01G231400 Carya illinoinensis HOM05D002451 ORTHO05D005601 9.6e-21 103.2 73 72.6
Glyma.15G019600 Glycine max HOM05D002451 ORTHO05D005601 3.7e-20 101.3 73 71.2
Lalb_Chr14g0373021 Lupinus albus HOM05D002451 ORTHO05D005601 8.1e-20 100.1 72 75.0
QL05p020031 Quercus lobata HOM05D002451 ORTHO05D005601 5.3e-19 97.4 73 68.5
Cfa003647 Carpinus fangiana HOM05D002451 ORTHO05D005601 1.7e-17 92.4 73 68.5
Manes.11G033500 Manihot esculenta HOM05D002451 ORTHO05D005601 1.7e-17 92.4 73 65.8
Haze_15848 Corylus avellana HOM05D002451 ORTHO05D005601 4.9e-17 90.9 73 67.1
Ciclev10024743m.g Citrus clementina HOM05D002451 ORTHO05D005601 1.9e-16 89.0 73 63.0
Lj1g0017121 Lotus japonicus HOM05D002451 ORTHO05D005601 1.9e-16 89.0 56 78.6
TAR636G2911 Trochodendron aralioides HOM05D002451 ORTHO05D005601 1.9e-16 89.0 73 65.8
Sed0021872 Sechium edule HOM05D002451 ORTHO05D005601 4.2e-16 87.8 73 60.3
Actinidia32098 Actinidia chinensis HOM05D002451 ORTHO05D005601 7.1e-16 87.0 73 58.9
TWI12G0408 Tripterygium wilfordii HOM05D002451 ORTHO05D005601 7.1e-16 87.0 73 63.0
FAN09G4229 Fragaria x ananassa HOM05D002451 ORTHO05D005601 2.1e-15 85.5 73 64.4
Potri.003G048800 Populus trichocarpa HOM05D002451 ORTHO05D005601 2.7e-15 85.1 73 61.6
FvH4_6g32400 Fragaria vesca HOM05D002451 ORTHO05D005601 3.5e-15 84.7 82 58.5
MD09G1202800 Malus domestica HOM05D002451 ORTHO05D005601 3.5e-15 84.7 73 61.6
Prupe.3G059000 Prunus persica HOM05D002451 ORTHO05D005601 3.5e-15 84.7 73 61.6
TWI75G1452 Tripterygium wilfordii HOM05D002451 ORTHO05D005601 3.5e-15 84.7 73 63.0
Dinv37977 Davidia involucrata HOM05D002451 ORTHO05D005601 7.9e-15 83.6 73 58.9
Migut.I00897 Erythranthe guttata HOM05D002451 ORTHO05D005601 7.9e-15 83.6 73 54.8
Thecc.06G100100 Theobroma cacao HOM05D002451 ORTHO05D005601 7.9e-15 83.6 73 63.0
RcHm_v2.0_Chr2g0140541 Rosa chinensis HOM05D002451 ORTHO05D005601 1.0e-14 83.2 73 61.6
TAR624G0246 Trochodendron aralioides HOM05D002451 ORTHO05D005601 1.3e-14 82.8 80 58.8
FAN02G1073 Fragaria x ananassa HOM05D002451 ORTHO05D005601 3.0e-14 81.6 73 60.3
CANSAT56G2471 Cannabis sativa HOM05D002451 ORTHO05D005601 3.9e-14 81.3 73 58.9
Lj9C513G3 Lonicera japonica HOM05D002451 ORTHO05D005601 3.9e-14 81.3 73 54.8
Nn8g39071 Nelumbo nucifera HOM05D002451 ORTHO05D005601 5.1e-14 80.9 73 56.2
Rhsim08G0227600 Rhododendron simsii HOM05D002451 ORTHO05D005601 5.1e-14 80.9 73 53.4
PGR102G3176 Punica granatum HOM05D002451 ORTHO05D005601 6.7e-14 80.5 73 56.2
Oeu017119.1 Olea europaea HOM05D002451 ORTHO05D005601 1.1e-13 79.7 73 54.8
Atru.chr1.3524 Acer truncatum HOM05D002451 ORTHO05D005601 1.5e-13 79.3 71 57.7
ClCG09G000210 Citrullus lanatus HOM05D002451 ORTHO05D005601 1.5e-13 79.3 73 56.2
DCAR_023080 Daucus carota HOM05D002451 ORTHO05D005601 1.5e-13 79.3 73 57.5
FAN05G4332 Fragaria x ananassa HOM05D002451 ORTHO05D005601 1.5e-13 79.3 73 60.3
COL.COLO4_30513 Corchorus olitorius HOM05D002451 ORTHO05D005601 1.9e-13 79.0 73 58.9
MELO3C024437.2 Cucumis melo HOM05D002451 ORTHO05D005601 1.9e-13 79.0 73 57.5
CsaV3_7G035270 Cucumis sativus L. HOM05D002451 ORTHO05D005601 2.5e-13 78.6 73 56.2
Duzib192G0210 Durio zibethinus HOM05D002451 ORTHO05D005601 3.3e-13 78.2 73 56.2
MBI04_g20307_MAGBIO Magnolia biondii HOM05D002451 ORTHO05D005601 4.3e-13 77.8 73 54.8
Gohir.D06G197800 Gossypium hirsutum HOM05D002451 ORTHO05D005601 5.7e-13 77.4 73 56.2
Gorai.010G230600 Gossypium raimondii HOM05D002451 ORTHO05D005601 5.7e-13 77.4 73 56.2
Eucgr.F03079 Eucalyptus grandis HOM05D002451 ORTHO05D005601 9.6e-13 76.6 73 53.4
MSTRG.11027 Avicennia marina HOM05D002451 ORTHO05D005601 1.6e-12 75.9 73 50.7
Solyc03g121030.2 Solanum lycopersicum HOM05D002451 ORTHO05D005601 1.6e-12 75.9 73 46.6
Sopen03g039860 Solanum pennellii HOM05D002451 ORTHO05D005601 1.6e-12 75.9 73 46.6
CAN.G1143.14 Capsicum annuum HOM05D002451 ORTHO05D005601 2.1e-12 75.5 73 47.9
Gohir.A06G189400 Gossypium hirsutum HOM05D002451 ORTHO05D005601 2.1e-12 75.5 73 54.8
Sc10g0007590 Simmondsia chinensis HOM05D002451 ORTHO05D005601 2.1e-12 75.5 71 50.7
Cc04_g02550 Coffea canephora HOM05D002451 ORTHO05D005601 6.2e-12 73.9 73 47.9
AUR62031915 Chenopodium quinoa HOM05D002451 ORTHO05D005601 8.2e-12 73.6 73 50.7
AUR62022206 Chenopodium quinoa HOM05D002451 ORTHO05D005601 2.4e-11 72.0 73 49.3
Lsat_1_v5_gn_4_97440 Lactuca sativa HOM05D002451 ORTHO05D005601 2.4e-11 72.0 73 50.7
GSVIVG01016980001 Vitis vinifera HOM05D002451 ORTHO05D005601 2.4e-11 72.0 73 54.8
CSS0036196 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 3.1e-11 71.6 82 50.0
Peaxi162Scf00038g01032 Petunia axillaris HOM05D002451 ORTHO05D005601 5.3e-11 70.9 73 43.8
ATR0705G185 Amborella trichopoda HOM05D002451 ORTHO05D005601 6.9e-11 70.5 73 50.7
SGA_v2.0_scaffold66G22528 Striga asiatica HOM05D002451 ORTHO05D005601 9.0e-11 70.1 73 42.5
PSO832G2466 Papaver somniferum HOM05D002451 ORTHO05D005601 2.0e-10 68.9 73 50.7
PSO063G3373 Papaver somniferum HOM05D002451 ORTHO05D005601 3.4e-10 68.2 73 49.3
Sabra03G0029200 Salix brachista HOM05D002451 ORTHO05D005601 5.8e-10 67.4 56 57.1
Ah.01g022090 Amaranthus hybridus HOM05D002451 ORTHO05D005601 1.0e-09 66.6 73 43.8
HanXRQChr09g0276251 Helianthus annuus HOM05D002451 ORTHO05D005601 1.0e-09 66.6 74 48.6
ECA232G2699 Erigeron canadensis HOM05D002451 ORTHO05D005601 1.7e-09 65.9 74 44.6
Aqoxy7G01406 Aquilegia oxysepala HOM05D002451 ORTHO05D005601 6.5e-09 63.9 73 47.9
HPP92_007690 Vanilla planifolia HOM05D002451 ORTHO05D005601 6.5e-09 63.9 73 45.2
HPP92_007773 Vanilla planifolia HOM05D002451 ORTHO05D005601 6.5e-09 63.9 73 45.2
CARHR259290 Cardamine hirsuta HOM05D002451 ORTHO05D005601 2.5e-08 62.0 74 45.9
BraA02t08709Z Brassica rapa HOM05D002451 ORTHO05D005601 7.1e-08 60.5 74 44.6
CDE05G1834 Ceratophyllum demersum HOM05D002451 ORTHO05D005601 7.1e-08 60.5 72 47.2
BcaB07g30001 Brassica carinata HOM05D002451 ORTHO05D005601 1.2e-07 59.7 74 44.6
THA.LOC104809828 Tarenaya hassleriana HOM05D002451 ORTHO05D005601 1.2e-07 59.7 71 46.5
AT5G48120 Arabidopsis thaliana HOM05D002451 ORTHO05D005601 1.6e-07 59.3 75 44.0
A02p37220 Brassica napus HOM05D002451 ORTHO05D005601 1.6e-07 59.3 74 43.2
Nitab4.5_0006902g0020 Nicotiana tabacum HOM05D002451 ORTHO05D005601 1.6e-07 59.3 82 36.6
Thhalv10003552m.g Eutrema salsugineum HOM05D002451 ORTHO05D005601 2.1e-07 58.9 73 45.2
BcaC03g17628 Brassica carinata HOM05D002451 ORTHO05D005601 2.7e-07 58.5 74 43.2
BolC2t11683H Brassica oleracea HOM05D002451 ORTHO05D005601 2.7e-07 58.5 74 43.2
Nitab4.5_0006467g0020 Nicotiana tabacum HOM05D002451 ORTHO05D005601 2.7e-07 58.5 82 35.4
Aa31LG11G5160 Aethionema arabicum HOM05D002451 ORTHO05D005601 3.5e-07 58.2 74 39.2
Hund07601 Selenicereus undatus HOM05D002451 ORTHO05D005601 4.6e-07 57.8 111 34.2
Zm00001eb301230 Zea mays HOM05D002451 ORTHO05D005601 6.1e-07 57.4 73 38.4
AL8G20730 Arabidopsis lyrata HOM05D002451 ORTHO05D005601 7.9e-07 57.0 75 41.3
Carub.0008s0769 Capsella rubella HOM05D002451 ORTHO05D005601 7.9e-07 57.0 75 42.7
Sp2g18530 Schrenkiella parvula HOM05D002451 ORTHO05D005601 1.3e-06 56.2 72 43.1
Aa31LG11G5130 Aethionema arabicum HOM05D002451 ORTHO05D005601 1.8e-06 55.8 74 39.2
HPP92_007804 Vanilla planifolia HOM05D002451 ORTHO05D005601 1.8e-06 55.8 56 50.0
C02p56250 Brassica napus HOM05D002451 ORTHO05D005601 2.3e-06 55.5 74 41.9


User provided reference genes

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