Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G18835 Trifolium pratense HOM05D002451 ORTHO05D005601 5.4e-33 143.7 69 100.0
TPR.G6596 Trifolium pratense HOM05D002451 ORTHO05D005601 1.9e-22 108.6 65 83.1
Medtr2g100870 Medicago truncatula HOM05D002451 ORTHO05D005601 5.6e-22 107.1 61 90.2
Phvul.005G166100 Phaseolus vulgaris HOM05D002451 ORTHO05D005601 9.6e-22 106.3 65 81.5
Lalb_Chr14g0373021 Lupinus albus HOM05D002451 ORTHO05D005601 1.6e-21 105.5 63 81.0
Lj1g0009957 Lotus japonicus HOM05D002451 ORTHO05D005601 2.8e-21 104.8 59 84.7
Medtr5g085950 Medicago truncatula HOM05D002451 ORTHO05D005601 2.8e-21 104.8 65 80.0
Glyma.13G354600 Glycine max HOM05D002451 ORTHO05D005601 3.6e-21 104.4 59 84.7
Ca_01165_v3 Cicer arietinum L. HOM05D002451 ORTHO05D005601 1.1e-20 102.8 65 80.0
Glyma.15G019600 Glycine max HOM05D002451 ORTHO05D005601 1.1e-20 102.8 59 83.1
Psat5g295800 Pisum sativum HOM05D002451 ORTHO05D005601 1.8e-20 102.1 65 80.0
arahy.Tifrunner.gnm1.ann1.T566S8 Arachis hypogaea HOM05D002451 ORTHO05D005601 2.9e-18 94.7 62 72.6
arahy.Tifrunner.gnm1.ann1.65X03I Arachis hypogaea HOM05D002451 ORTHO05D005601 4.9e-18 94.0 62 71.0
QL05p020031 Quercus lobata HOM05D002451 ORTHO05D005601 1.4e-17 92.4 63 66.7
Nn8g39071 Nelumbo nucifera HOM05D002451 ORTHO05D005601 1.9e-17 92.0 62 71.0
TWI12G0408 Tripterygium wilfordii HOM05D002451 ORTHO05D005601 2.4e-17 91.7 64 68.8
Sabra03G0029200 Salix brachista HOM05D002451 ORTHO05D005601 4.2e-17 90.9 62 71.0
TAR624G0246 Trochodendron aralioides HOM05D002451 ORTHO05D005601 5.4e-17 90.5 62 71.0
GSVIVG01016980001 Vitis vinifera HOM05D002451 ORTHO05D005601 1.2e-16 89.4 57 70.2
Cfa003647 Carpinus fangiana HOM05D002451 ORTHO05D005601 1.6e-16 89.0 62 66.1
MD09G1202800 Malus domestica HOM05D002451 ORTHO05D005601 2.1e-16 88.6 63 65.1
CiPaw.01G231400 Carya illinoinensis HOM05D002451 ORTHO05D005601 3.5e-16 87.8 64 65.6
Dinv37977 Davidia involucrata HOM05D002451 ORTHO05D005601 3.5e-16 87.8 59 69.5
Potri.003G048800 Populus trichocarpa HOM05D002451 ORTHO05D005601 3.5e-16 87.8 62 71.0
Prupe.3G059000 Prunus persica HOM05D002451 ORTHO05D005601 3.5e-16 87.8 57 66.7
Ciclev10024743m.g Citrus clementina HOM05D002451 ORTHO05D005601 4.6e-16 87.4 62 69.4
Haze_15848 Corylus avellana HOM05D002451 ORTHO05D005601 4.6e-16 87.4 62 64.5
Eucgr.F03079 Eucalyptus grandis HOM05D002451 ORTHO05D005601 4.6e-16 87.4 61 70.5
THA.LOC104809828 Tarenaya hassleriana HOM05D002451 ORTHO05D005601 7.8e-16 86.7 63 61.9
TWI75G1452 Tripterygium wilfordii HOM05D002451 ORTHO05D005601 7.8e-16 86.7 62 69.4
CSS0036196 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 1.0e-15 86.3 62 66.1
AUR62031915 Chenopodium quinoa HOM05D002451 ORTHO05D005601 1.7e-15 85.5 62 61.3
Sc10g0007590 Simmondsia chinensis HOM05D002451 ORTHO05D005601 1.7e-15 85.5 62 64.5
Lj9C513G3 Lonicera japonica HOM05D002451 ORTHO05D005601 2.3e-15 85.1 63 63.5
AUR62022206 Chenopodium quinoa HOM05D002451 ORTHO05D005601 3.0e-15 84.7 62 61.3
RcHm_v2.0_Chr2g0140541 Rosa chinensis HOM05D002451 ORTHO05D005601 3.0e-15 84.7 57 66.7
Hund07601 Selenicereus undatus HOM05D002451 ORTHO05D005601 3.0e-15 84.7 59 62.7
ATR0705G185 Amborella trichopoda HOM05D002451 ORTHO05D005601 6.6e-15 83.6 62 62.9
Rhsim08G0227600 Rhododendron simsii HOM05D002451 ORTHO05D005601 6.6e-15 83.6 62 64.5
Ah.01g022090 Amaranthus hybridus HOM05D002451 ORTHO05D005601 8.7e-15 83.2 62 59.7
AL8G20730 Arabidopsis lyrata HOM05D002451 ORTHO05D005601 8.7e-15 83.2 63 63.5
TAR636G2911 Trochodendron aralioides HOM05D002451 ORTHO05D005601 8.7e-15 83.2 62 67.7
CANSAT56G2471 Cannabis sativa HOM05D002451 ORTHO05D005601 1.5e-14 82.4 58 69.0
ClCG09G000210 Citrullus lanatus HOM05D002451 ORTHO05D005601 1.5e-14 82.4 62 64.5
Gorai.010G230600 Gossypium raimondii HOM05D002451 ORTHO05D005601 1.5e-14 82.4 57 63.2
AT5G48120 Arabidopsis thaliana HOM05D002451 ORTHO05D005601 1.9e-14 82.0 63 61.9
COL.COLO4_30513 Corchorus olitorius HOM05D002451 ORTHO05D005601 1.9e-14 82.0 57 64.9
Actinidia32098 Actinidia chinensis HOM05D002451 ORTHO05D005601 2.5e-14 81.6 62 61.3
Sed0021872 Sechium edule HOM05D002451 ORTHO05D005601 2.5e-14 81.6 62 62.9
MELO3C024437.2 Cucumis melo HOM05D002451 ORTHO05D005601 4.3e-14 80.9 62 62.9
CsaV3_7G035270 Cucumis sativus L. HOM05D002451 ORTHO05D005601 4.3e-14 80.9 62 62.9
Thhalv10003552m.g Eutrema salsugineum HOM05D002451 ORTHO05D005601 4.3e-14 80.9 63 60.3
FAN02G1073 Fragaria x ananassa HOM05D002451 ORTHO05D005601 4.3e-14 80.9 54 68.5
CDE05G1834 Ceratophyllum demersum HOM05D002451 ORTHO05D005601 5.6e-14 80.5 62 62.9
PGR102G3176 Punica granatum HOM05D002451 ORTHO05D005601 5.6e-14 80.5 62 59.7
Aa31LG11G5130 Aethionema arabicum HOM05D002451 ORTHO05D005601 9.6e-14 79.7 63 58.7
CARHR259290 Cardamine hirsuta HOM05D002451 ORTHO05D005601 1.3e-13 79.3 58 63.8
FAN05G4332 Fragaria x ananassa HOM05D002451 ORTHO05D005601 1.3e-13 79.3 57 66.7
MSTRG.11027 Avicennia marina HOM05D002451 ORTHO05D005601 1.6e-13 79.0 62 67.7
MBI04_g20307_MAGBIO Magnolia biondii HOM05D002451 ORTHO05D005601 1.6e-13 79.0 62 64.5
Duzib192G0210 Durio zibethinus HOM05D002451 ORTHO05D005601 2.1e-13 78.6 57 63.2
Gohir.D06G197800 Gossypium hirsutum HOM05D002451 ORTHO05D005601 2.1e-13 78.6 57 61.4
BcaC03g17628 Brassica carinata HOM05D002451 ORTHO05D005601 2.8e-13 78.2 63 58.7
A02p37220 Brassica napus HOM05D002451 ORTHO05D005601 2.8e-13 78.2 63 58.7
C02p56250 Brassica napus HOM05D002451 ORTHO05D005601 2.8e-13 78.2 63 58.7
BolC2t11683H Brassica oleracea HOM05D002451 ORTHO05D005601 2.8e-13 78.2 63 58.7
Carub.0008s0769 Capsella rubella HOM05D002451 ORTHO05D005601 2.8e-13 78.2 63 57.1
Lsat_1_v5_gn_4_97440 Lactuca sativa HOM05D002451 ORTHO05D005601 2.8e-13 78.2 62 56.5
Aa31LG11G5160 Aethionema arabicum HOM05D002451 ORTHO05D005601 3.6e-13 77.8 63 57.1
SGA_v2.0_scaffold66G22528 Striga asiatica HOM05D002451 ORTHO05D005601 3.6e-13 77.8 57 64.9
Sopen03g039860 Solanum pennellii HOM05D002451 ORTHO05D005601 4.8e-13 77.4 62 58.1
Aa31LG9G10320 Aethionema arabicum HOM05D002451 ORTHO05D005601 6.2e-13 77.0 55 61.8
Thecc.06G100100 Theobroma cacao HOM05D002451 ORTHO05D005601 6.2e-13 77.0 62 59.7
BcaB07g30001 Brassica carinata HOM05D002451 ORTHO05D005601 8.1e-13 76.6 63 57.1
Cc04_g02550 Coffea canephora HOM05D002451 ORTHO05D005601 1.4e-12 75.9 62 62.9
ECA232G2699 Erigeron canadensis HOM05D002451 ORTHO05D005601 1.4e-12 75.9 62 56.5
Solyc03g121030.2 Solanum lycopersicum HOM05D002451 ORTHO05D005601 1.4e-12 75.9 62 56.5
DCAR_023080 Daucus carota HOM05D002451 ORTHO05D005601 1.8e-12 75.5 60 60.0
Sp2g18530 Schrenkiella parvula HOM05D002451 ORTHO05D005601 3.1e-12 74.7 63 55.6
Aqoxy7G01406 Aquilegia oxysepala HOM05D002451 ORTHO05D005601 4.0e-12 74.3 62 59.7
PSO063G3373 Papaver somniferum HOM05D002451 ORTHO05D005601 4.0e-12 74.3 62 61.3
CAN.G1143.14 Capsicum annuum HOM05D002451 ORTHO05D005601 5.3e-12 73.9 62 58.1
BraA02t08709Z Brassica rapa HOM05D002451 ORTHO05D005601 6.9e-12 73.6 63 55.6
PSO832G2466 Papaver somniferum HOM05D002451 ORTHO05D005601 6.9e-12 73.6 62 61.3
Migut.I00897 Erythranthe guttata HOM05D002451 ORTHO05D005601 1.2e-11 72.8 62 61.3
Manes.11G033500 Manihot esculenta HOM05D002451 ORTHO05D005601 4.5e-11 70.9 62 58.1
unitig_88.g27602 Utricularia gibba HOM05D002451 ORTHO05D005601 4.5e-11 70.9 60 55.0
HPP92_007773 Vanilla planifolia HOM05D002451 ORTHO05D005601 4.5e-11 70.9 63 47.6
Atru.chr1.3524 Acer truncatum HOM05D002451 ORTHO05D005601 9.9e-11 69.7 62 58.1
HPP92_007690 Vanilla planifolia HOM05D002451 ORTHO05D005601 1.3e-10 69.3 63 46.0
HanXRQChr09g0276251 Helianthus annuus HOM05D002451 ORTHO05D005601 2.9e-10 68.2 62 51.6
Zm00001eb301230 Zea mays HOM05D002451 ORTHO05D005601 3.8e-10 67.8 58 51.7
SEGI_23779 Sequoiadendron giganteum HOM05D002451 ORTHO05D005601 4.9e-10 67.4 64 46.9
Zm00001eb029900 Zea mays HOM05D002451 ORTHO05D005601 5.1e-07 57.4 56 46.4
Pp3c9_4950 Physcomitrium patens HOM05D002451 ORTHO05D005601 8.7e-07 56.6 64 42.2
SMO111G0185 Selaginella moellendorffii HOM05D002451 ORTHO05D005601 5.6e-06 53.9 46 52.2


User provided reference genes

Program Settings