Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G18819 Trifolium pratense HOM05D005917 ORTHO05D007517 5.1e-128 461.1 228 100.0
TPR.G15058 Trifolium pratense HOM05D005917 ORTHO05D007517 2.1e-65 253.1 278 55.8
Medtr5g097510 Medicago truncatula HOM05D005917 ORTHO05D007517 6.7e-64 248.1 283 53.4
Psat0s736g0080 Pisum sativum HOM05D005917 ORTHO05D007517 6.7e-64 248.1 283 53.7
Ca_06463_v3 Cicer arietinum L. HOM05D005917 ORTHO05D007517 7.0e-61 238.0 279 52.3
Glyma.14G006700 Glycine max HOM05D005917 ORTHO05D007517 3.3e-55 219.2 281 48.8
Glyma.02G306400 Glycine max HOM05D005917 ORTHO05D007517 9.7e-55 217.6 281 48.4
VMungo0647G1382 Vigna mungo HOM05D005917 ORTHO05D007517 2.4e-53 213.0 276 48.9
arahy.Tifrunner.gnm1.ann1.410RPC Arachis hypogaea HOM05D005917 ORTHO05D007517 2.9e-51 206.1 290 46.6
arahy.Tifrunner.gnm1.ann1.V8M1HU Arachis hypogaea HOM05D005917 ORTHO05D007517 2.9e-51 206.1 290 46.6
Phvul.008G286200 Phaseolus vulgaris HOM05D005917 ORTHO05D007517 8.5e-51 204.5 281 46.6
LjContig00081g0012334 Lotus japonicus HOM05D005917 ORTHO05D007517 7.2e-50 201.4 281 46.3
Lalb_Chr17g0349121 Lupinus albus HOM05D005917 ORTHO05D007517 3.6e-49 199.1 289 47.1
Manes.13G063400 Manihot esculenta HOM05D005917 ORTHO05D007517 2.0e-47 193.4 283 44.2
QL08p028769 Quercus lobata HOM05D005917 ORTHO05D007517 2.0e-47 193.4 289 43.6
THA.LOC104802624 Tarenaya hassleriana HOM05D005917 ORTHO05D007517 2.2e-46 189.9 284 42.3
ClCG02G002680 Citrullus lanatus HOM05D005917 ORTHO05D007517 1.4e-45 187.2 286 42.0
CsaV3_7G002690 Cucumis sativus L. HOM05D005917 ORTHO05D007517 4.1e-45 185.7 286 41.6
COL.COLO4_33026 Corchorus olitorius HOM05D005917 ORTHO05D007517 5.4e-45 185.3 280 43.6
Gohir.D11G156700 Gossypium hirsutum HOM05D005917 ORTHO05D007517 1.2e-44 184.1 280 43.2
Gorai.007G167200 Gossypium raimondii HOM05D005917 ORTHO05D007517 1.2e-44 184.1 280 43.2
Sed0016848 Sechium edule HOM05D005917 ORTHO05D007517 1.2e-44 184.1 286 41.6
TWI18G0259 Tripterygium wilfordii HOM05D005917 ORTHO05D007517 1.6e-44 183.7 276 41.3
Cpa.g.sc136.15 Carica papaya HOM05D005917 ORTHO05D007517 2.0e-44 183.3 277 43.0
Duzib133G0758 Durio zibethinus HOM05D005917 ORTHO05D007517 2.7e-44 183.0 284 42.6
Nn1g08522 Nelumbo nucifera HOM05D005917 ORTHO05D007517 3.5e-44 182.6 285 40.7
Aqoxy1G02033 Aquilegia oxysepala HOM05D005917 ORTHO05D007517 4.5e-44 182.2 278 42.8
Gohir.A11G150200 Gossypium hirsutum HOM05D005917 ORTHO05D007517 5.9e-44 181.8 280 42.9
Thecc.01G189700 Theobroma cacao HOM05D005917 ORTHO05D007517 7.7e-44 181.4 280 43.6
SHI10119 Sapria himalayana HOM05D005917 ORTHO05D007517 1.0e-43 181.0 281 39.9
Aa31LG5G18370 Aethionema arabicum HOM05D005917 ORTHO05D007517 1.3e-43 180.6 278 42.4
Thhalv10022183m.g Eutrema salsugineum HOM05D005917 ORTHO05D007517 2.2e-43 179.9 278 41.7
Atru.chr6.3353 Acer truncatum HOM05D005917 ORTHO05D007517 2.9e-43 179.5 290 41.0
Ciclev10014942m.g Citrus clementina HOM05D005917 ORTHO05D007517 2.9e-43 179.5 279 41.6
MD09G1121500 Malus domestica HOM05D005917 ORTHO05D007517 3.8e-43 179.1 275 43.6
Sabra02G0169500 Salix brachista HOM05D005917 ORTHO05D007517 3.8e-43 179.1 286 40.9
Dinv07857 Davidia involucrata HOM05D005917 ORTHO05D007517 6.5e-43 178.3 280 41.4
AT3G07790 Arabidopsis thaliana HOM05D005917 ORTHO05D007517 1.9e-42 176.8 289 39.8
CSS0026358 Camellia sinensis var. sinensis HOM05D005917 ORTHO05D007517 1.9e-42 176.8 271 41.3
CiPaw.04G195700 Carya illinoinensis HOM05D005917 ORTHO05D007517 1.9e-42 176.8 287 42.9
Prupe.3G202200 Prunus persica HOM05D005917 ORTHO05D007517 1.9e-42 176.8 278 42.8
Potri.002G222100 Populus trichocarpa HOM05D005917 ORTHO05D007517 3.2e-42 176.0 286 40.6
TWI36G1171 Tripterygium wilfordii HOM05D005917 ORTHO05D007517 3.2e-42 176.0 254 42.5
AL3G19160 Arabidopsis lyrata HOM05D005917 ORTHO05D007517 4.2e-42 175.6 289 39.8
MD17G1112500 Malus domestica HOM05D005917 ORTHO05D007517 4.2e-42 175.6 275 43.3
TAR626G1403 Trochodendron aralioides HOM05D005917 ORTHO05D007517 4.2e-42 175.6 287 38.7
EL10Ac9g22738 Beta vulgaris HOM05D005917 ORTHO05D007517 5.5e-42 175.3 274 43.1
Hma1.2p1_0405F.1_g145810 Hydrangea macrophylla HOM05D005917 ORTHO05D007517 9.4e-42 174.5 277 40.1
vmacro12107 Vaccinium macrocarpon HOM05D005917 ORTHO05D007517 9.4e-42 174.5 270 43.0
Eucgr.K00656 Eucalyptus grandis HOM05D005917 ORTHO05D007517 1.2e-41 174.1 279 40.5
PGR042G1386 Punica granatum HOM05D005917 ORTHO05D007517 2.1e-41 173.3 277 41.5
Lj1P791T65 Lonicera japonica HOM05D005917 ORTHO05D007517 6.1e-41 171.8 277 40.8
Manes.12G062101 Manihot esculenta HOM05D005917 ORTHO05D007517 6.1e-41 171.8 281 40.6
Sp3g06720 Schrenkiella parvula HOM05D005917 ORTHO05D007517 6.1e-41 171.8 279 39.8
TAR624G1058 Trochodendron aralioides HOM05D005917 ORTHO05D007517 8.0e-41 171.4 284 38.4
Rhsim06G0173900 Rhododendron simsii HOM05D005917 ORTHO05D007517 3.0e-40 169.5 276 40.9
CARHR082500 Cardamine hirsuta HOM05D005917 ORTHO05D007517 4.0e-40 169.1 279 40.1
Ah.14g082780 Amaranthus hybridus HOM05D005917 ORTHO05D007517 5.2e-40 168.7 275 41.1
Carub.0003s0737 Capsella rubella HOM05D005917 ORTHO05D007517 6.8e-40 168.3 279 39.4
MBI16_g11554_MAGBIO Magnolia biondii HOM05D005917 ORTHO05D007517 8.8e-40 167.9 283 38.2
C05p59510 Brassica napus HOM05D005917 ORTHO05D007517 1.2e-39 167.5 272 39.7
A05p40430 Brassica napus HOM05D005917 ORTHO05D007517 1.5e-39 167.2 266 40.2
BraA05t22776Z Brassica rapa HOM05D005917 ORTHO05D007517 1.5e-39 167.2 267 41.2
BolC5t34607H Brassica oleracea HOM05D005917 ORTHO05D007517 3.4e-39 166.0 272 39.7
BraA01t04362Z Brassica rapa HOM05D005917 ORTHO05D007517 3.4e-39 166.0 283 38.5
Haze_12696 Corylus avellana HOM05D005917 ORTHO05D007517 4.4e-39 165.6 284 41.9
Lsat_1_v5_gn_7_96161 Lactuca sativa HOM05D005917 ORTHO05D007517 4.4e-39 165.6 278 39.6
BcaC05g29571 Brassica carinata HOM05D005917 ORTHO05D007517 7.5e-39 164.9 272 39.3
BcaC09g47947 Brassica carinata HOM05D005917 ORTHO05D007517 7.5e-39 164.9 271 39.1
BolC1t05532H Brassica oleracea HOM05D005917 ORTHO05D007517 7.5e-39 164.9 271 39.1
Cfa014247 Carpinus fangiana HOM05D005917 ORTHO05D007517 7.5e-39 164.9 290 41.7
Potri.014G164200 Populus trichocarpa HOM05D005917 ORTHO05D007517 9.8e-39 164.5 288 39.2
FAN02G4512 Fragaria x ananassa HOM05D005917 ORTHO05D007517 1.3e-38 164.1 249 42.6
Sc21g0000840 Simmondsia chinensis HOM05D005917 ORTHO05D007517 1.7e-38 163.7 276 39.1
FvH4_6g41230 Fragaria vesca HOM05D005917 ORTHO05D007517 2.8e-38 162.9 273 40.3
AUR62017525 Chenopodium quinoa HOM05D005917 ORTHO05D007517 4.9e-38 162.2 276 41.3
Peaxi162Scf00776g00033 Petunia axillaris HOM05D005917 ORTHO05D007517 8.3e-38 161.4 277 39.0
Nitab4.5_0005699g0010 Nicotiana tabacum HOM05D005917 ORTHO05D007517 1.1e-37 161.0 285 40.0
FAN14G0404 Fragaria x ananassa HOM05D005917 ORTHO05D007517 1.4e-37 160.6 273 39.9
Nitab4.5_0000441g0160 Nicotiana tabacum HOM05D005917 ORTHO05D007517 1.8e-37 160.2 292 40.1
DCAR_019712 Daucus carota HOM05D005917 ORTHO05D007517 2.4e-37 159.8 275 39.3
FAN09G3123 Fragaria x ananassa HOM05D005917 ORTHO05D007517 2.4e-37 159.8 273 39.9
PSO700G0235 Papaver somniferum HOM05D005917 ORTHO05D007517 3.1e-37 159.5 283 37.8
Solyc07g047980.3 Solanum lycopersicum HOM05D005917 ORTHO05D007517 5.4e-37 158.7 281 39.1
Sopen07g024410 Solanum pennellii HOM05D005917 ORTHO05D007517 5.4e-37 158.7 281 39.1
PGSC0003DMG400006133 Solanum tuberosum HOM05D005917 ORTHO05D007517 5.4e-37 158.7 281 39.1
PSO761G0708 Papaver somniferum HOM05D005917 ORTHO05D007517 1.2e-36 157.5 283 37.5
CDE02G0007 Ceratophyllum demersum HOM05D005917 ORTHO05D007517 2.0e-36 156.8 277 37.5
CAN.G854.3 Capsicum annuum HOM05D005917 ORTHO05D007517 3.5e-36 156.0 277 39.0
FAN05G4769 Fragaria x ananassa HOM05D005917 ORTHO05D007517 3.5e-36 156.0 273 39.2
SGA_v2.0_scaffold302G47853 Striga asiatica HOM05D005917 ORTHO05D000086 4.5e-36 155.6 289 37.7
AUR62015069 Chenopodium quinoa HOM05D005917 ORTHO05D007517 7.7e-36 154.8 276 40.2
MELO3C024210.2 Cucumis melo HOM05D005917 ORTHO05D007517 7.7e-36 154.8 251 39.8
RcHm_v2.0_Chr2g0156781 Rosa chinensis HOM05D005917 ORTHO05D007517 1.0e-35 154.5 274 40.1
ECA236G4414 Erigeron canadensis HOM05D005917 ORTHO05D007517 1.7e-35 153.7 281 37.7
HanXRQChr04g0126661 Helianthus annuus HOM05D005917 ORTHO05D007517 1.5e-34 150.6 273 37.4
SEGI_07273 Sequoiadendron giganteum HOM05D005917 ORTHO05D007517 7.2e-34 148.3 292 35.3
Actinidia09775 Actinidia chinensis HOM05D005917 ORTHO05D007517 4.7e-33 145.6 233 41.2
MSTRG.14928 Avicennia marina HOM05D005917 ORTHO05D007517 1.0e-32 144.4 286 39.9
AagrBONN_evm.TU.Sc2ySwM_344.1277 Anthoceros agrestis HOM05D005917 ORTHO05D007517 8.9e-32 141.4 229 38.0
Cc02_g11180 Coffea canephora HOM05D005917 ORTHO05D007517 8.9e-32 141.4 303 35.6
Os06g0502900 Oryza sativa ssp. japonica HOM05D005917 ORTHO05D007517 5.7e-31 138.7 274 35.8
Pp3c5_28640 Physcomitrium patens HOM05D005917 ORTHO05D007517 2.2e-30 136.7 300 32.3
Mapoly0016s0028 Marchantia polymorpha HOM05D005917 ORTHO05D007517 2.9e-30 136.3 283 32.9
Oeu012341.1 Olea europaea HOM05D005917 ORTHO05D007517 4.9e-30 135.6 295 35.6
HPP92_002896 Vanilla planifolia HOM05D005917 ORTHO05D007517 4.9e-30 135.6 294 36.1
unitig_747.g21169 Utricularia gibba HOM05D005917 ORTHO05D007517 1.4e-29 134.0 287 35.9
HPP92_002885 Vanilla planifolia HOM05D005917 ORTHO05D007517 1.4e-29 134.0 294 36.1
Migut.M00025 Erythranthe guttata HOM05D005917 ORTHO05D007517 1.2e-28 131.0 289 35.3
ATR0665G318 Amborella trichopoda HOM05D005917 ORTHO05D007517 5.9e-28 128.6 239 36.8
Zm00001eb209430 Zea mays HOM05D005917 ORTHO05D007517 5.0e-27 125.6 277 33.6
SalBow2G0814 Salvia bowleyana HOM05D005917 ORTHO05D007517 7.5e-23 111.7 171 44.4
SalBow2G2149 Salvia bowleyana HOM05D005917 ORTHO05D007517 4.9e-22 109.0 165 43.0
SMO347G0414 Selaginella moellendorffii HOM05D005917 ORTHO05D007517 8.3e-22 108.2 253 30.8
Manes.12G052600 Manihot esculenta HOM05D005917 ORTHO05D007517 3.2e-21 106.3 224 36.2
GSVIVG01030044001 Vitis vinifera HOM05D005917 ORTHO05D000188 7.0e-21 105.1 211 38.4
CDE09G1298 Ceratophyllum demersum HOM05D005917 ORTHO05D007517 5.0e-19 99.0 142 43.0
Zm00001eb403830 Zea mays HOM05D005917 ORTHO05D007517 1.9e-18 97.1 163 39.3
Zm00001eb209420 Zea mays HOM05D005917 ORTHO05D007517 7.3e-18 95.1 163 38.7
Migut.L01336 Erythranthe guttata HOM05D005917 ORTHO05D007517 1.6e-17 94.0 150 44.7
CBR_g39617 Chara braunii HOM05D005917 ORTHO05D007517 1.3e-14 84.3 331 25.1
Prupe.3G225800 Prunus persica HOM05D005917 ORTHO05D007517 2.7e-12 76.6 63 61.9
Manes.16G064350 Manihot esculenta HOM05D005917 ORTHO05D007517 1.1e-10 71.2 47 70.2
CAN.G244.10 Capsicum annuum HOM05D000180 ORTHO05D000099 5.6e-10 68.9 49 65.3
MCO15G396 Micromonas commoda HOM05D005917 ORTHO05D007517 5.2e-08 62.4 157 29.3
Cre11.g482050 Chlamydomonas reinhardtii HOM05D005917 ORTHO05D007517 6.8e-08 62.0 59 50.8
Sed0013022 Sechium edule HOM05D005917 ORTHO05D007517 2.2e-06 57.0 56 57.1
HanXRQChr11g0328131 Helianthus annuus HOM05D005917 ORTHO05D007517 6.4e-06 55.5 70 42.9


User provided reference genes

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