Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G18815 Trifolium pratense HOM05D004979 ORTHO05D006190 0.0e+00 1110.9 539 100.0
TPR.G33173 Trifolium pratense HOM05D004979 ORTHO05D006190 0.0e+00 1095.9 539 98.3
Psat6g226240 Pisum sativum HOM05D004979 ORTHO05D006190 2.4e-298 1028.1 539 91.5
Medtr1g110490 Medicago truncatula HOM05D004979 ORTHO05D006190 1.6e-297 1025.4 533 91.7
Lj5g0020513 Lotus japonicus HOM05D004979 ORTHO05D006190 1.7e-278 962.2 527 86.5
arahy.Tifrunner.gnm1.ann1.4I4LKP Arachis hypogaea HOM05D004979 ORTHO05D006190 3.6e-273 944.5 537 82.1
Glyma.20G116900 Glycine max HOM05D004979 ORTHO05D006190 5.1e-272 940.6 539 82.6
Lalb_Chr04g0254641 Lupinus albus HOM05D004979 ORTHO05D006190 5.1e-272 940.6 539 83.1
Glyma.10G273100 Glycine max HOM05D004979 ORTHO05D006190 4.4e-271 937.6 525 84.0
VMungo0720G1588 Vigna mungo HOM05D004979 ORTHO05D006190 1.4e-269 932.6 525 83.4
Phvul.007G028500 Phaseolus vulgaris HOM05D004979 ORTHO05D006190 1.0e-264 916.4 528 82.0
arahy.Tifrunner.gnm1.ann1.Q958TZ Arachis hypogaea HOM05D004979 ORTHO05D006190 2.3e-264 915.2 595 74.3
Lj4g0015757 Lotus japonicus HOM05D004979 ORTHO05D006190 8.2e-254 880.2 476 88.0
Manes.08G106500 Manihot esculenta HOM05D004979 ORTHO05D006190 7.2e-242 840.5 518 73.6
RcHm_v2.0_Chr1g0332651 Rosa chinensis HOM05D004979 ORTHO05D006190 1.2e-241 839.7 523 74.0
FAN01G0279 Fragaria x ananassa HOM05D004979 ORTHO05D006190 3.0e-240 835.1 516 74.6
MD08G1246100 Malus domestica HOM05D004979 ORTHO05D006190 3.4e-239 831.6 515 73.4
CSS0020951 Camellia sinensis var. sinensis HOM05D004979 ORTHO05D006190 4.4e-239 831.2 519 73.8
CSS0020926 Camellia sinensis var. sinensis HOM05D004979 ORTHO05D006190 2.8e-238 828.6 519 73.4
AL1G67180 Arabidopsis lyrata HOM05D004979 ORTHO05D006190 1.4e-237 826.2 527 70.2
Atru.chr12.1512 Acer truncatum HOM05D004979 ORTHO05D006190 3.1e-237 825.1 518 72.8
Thecc.05G331000 Theobroma cacao HOM05D004979 ORTHO05D006190 5.4e-237 824.3 514 73.0
Potri.013G000600 Populus trichocarpa HOM05D004979 ORTHO05D006190 9.2e-237 823.5 536 70.9
QL03p011287 Quercus lobata HOM05D004979 ORTHO05D006190 1.2e-236 823.2 520 73.3
FAN06G2997 Fragaria x ananassa HOM05D004979 ORTHO05D006190 2.0e-236 822.4 538 71.6
PGR117G0001 Punica granatum HOM05D004979 ORTHO05D006190 1.0e-235 820.1 526 72.6
CARHR054720 Cardamine hirsuta HOM05D004979 ORTHO05D006190 1.7e-235 819.3 520 70.4
CiPaw.01G000500 Carya illinoinensis HOM05D004979 ORTHO05D006190 6.6e-235 817.4 520 72.7
PGR004G0062 Punica granatum HOM05D004979 ORTHO05D006190 8.6e-235 817.0 526 72.1
Thhalv10023409m.g Eutrema salsugineum HOM05D004979 ORTHO05D006190 4.3e-234 814.7 525 70.3
Cc02_g36100 Coffea canephora HOM05D004979 ORTHO05D006190 7.3e-234 813.9 518 71.0
AT1G57600 Arabidopsis thaliana HOM05D004979 ORTHO05D006190 9.5e-234 813.5 525 69.5
EL10Ac8g20414 Beta vulgaris HOM05D004979 ORTHO05D006190 9.5e-234 813.5 519 71.9
CANSAT56G2810 Cannabis sativa HOM05D004979 ORTHO05D006190 9.5e-234 813.5 516 72.5
Migut.B00894 Erythranthe guttata HOM05D004979 ORTHO05D006190 9.5e-234 813.5 521 71.4
MD15G1441300 Malus domestica HOM05D004979 ORTHO05D006190 1.6e-233 812.8 515 72.4
Oeu061912.1 Olea europaea HOM05D004979 ORTHO05D006190 2.8e-233 812.0 519 71.9
THA.LOC104816839 Tarenaya hassleriana HOM05D004979 ORTHO05D006190 6.1e-233 810.8 532 70.1
TWI60G1029 Tripterygium wilfordii HOM05D004979 ORTHO05D006190 1.0e-232 810.1 516 71.7
Ciclev10028175m.g Citrus clementina HOM05D004979 ORTHO05D006190 3.0e-232 808.5 515 71.8
Cc02_g36050 Coffea canephora HOM05D004979 ORTHO05D006190 3.0e-232 808.5 518 70.3
Sabra13G0000500 Salix brachista HOM05D004979 ORTHO05D006190 1.2e-231 806.6 532 70.1
Carub.0002s0703 Capsella rubella HOM05D004979 ORTHO05D006190 1.5e-231 806.2 525 69.5
MSTRG.16439 Avicennia marina HOM05D004979 ORTHO05D006190 2.6e-231 805.4 522 71.3
Actinidia22849 Actinidia chinensis HOM05D004979 ORTHO05D006190 4.4e-231 804.7 520 71.3
Sed0004859 Sechium edule HOM05D004979 ORTHO05D006190 4.4e-231 804.7 531 69.1
PSO357G0276 Papaver somniferum HOM05D004979 ORTHO05D006190 3.7e-230 801.6 531 69.5
PSO170G1924 Papaver somniferum HOM05D004979 ORTHO05D006190 6.4e-230 800.8 526 69.6
MELO3C019579.2 Cucumis melo HOM05D004979 ORTHO05D006190 3.2e-229 798.5 530 68.7
Sp2g05910 Schrenkiella parvula HOM05D004979 ORTHO05D006190 7.0e-229 797.3 526 68.8
SpUn0028_0030 Schrenkiella parvula HOM05D004979 ORTHO05D006190 7.0e-229 797.3 526 68.8
CAN.G756.6 Capsicum annuum HOM05D004979 ORTHO05D006190 3.0e-227 792.0 514 71.0
BolC9t55284H Brassica oleracea HOM05D004979 ORTHO05D006190 3.9e-227 791.6 521 69.3
BcaB07g31145 Brassica carinata HOM05D004979 ORTHO05D006190 6.6e-227 790.8 521 68.9
BcaC04g22085 Brassica carinata HOM05D004979 ORTHO05D006190 6.6e-227 790.8 521 69.1
PGSC0003DMG400001886 Solanum tuberosum HOM05D004979 ORTHO05D006190 6.6e-227 790.8 514 71.6
CsaV3_6G013140 Cucumis sativus L. HOM05D004979 ORTHO05D006190 8.6e-227 790.4 530 68.1
BraA09t37507Z Brassica rapa HOM05D004979 ORTHO05D006190 1.1e-226 790.0 521 68.7
Rhsim01G0213000 Rhododendron simsii HOM05D004979 ORTHO05D006190 1.9e-226 789.3 519 70.9
Aqoxy1G02435 Aquilegia oxysepala HOM05D004979 ORTHO05D006190 4.3e-226 788.1 530 70.8
Gohir.D13G003600 Gossypium hirsutum HOM05D004979 ORTHO05D006190 5.6e-226 787.7 531 68.5
Eucgr.I02672 Eucalyptus grandis HOM05D004979 ORTHO05D006190 3.6e-225 785.0 525 68.8
Gohir.A13G003700 Gossypium hirsutum HOM05D004979 ORTHO05D006190 4.7e-225 784.6 530 68.3
Gorai.013G003500 Gossypium raimondii HOM05D004979 ORTHO05D006190 4.7e-225 784.6 532 68.6
Solyc04g055190.4 Solanum lycopersicum HOM05D004979 ORTHO05D006190 2.3e-224 782.3 514 70.6
C09p23650 Brassica napus HOM05D004979 ORTHO05D006190 7.5e-223 777.3 545 66.1
A09p18870 Brassica napus HOM05D004979 ORTHO05D006190 4.9e-222 774.6 546 65.6
Dinv24526 Davidia involucrata HOM05D004979 ORTHO05D006190 4.9e-222 774.6 519 70.5
CAN.G1715.7 Capsicum annuum HOM05D004979 ORTHO05D006190 1.9e-221 772.7 514 69.5
Hund05397 Selenicereus undatus HOM05D004979 ORTHO05D006190 9.2e-221 770.4 490 71.2
ECA234G3247 Erigeron canadensis HOM05D004979 ORTHO05D006190 4.6e-220 768.1 499 70.1
HanXRQChr11g0327151 Helianthus annuus HOM05D004979 ORTHO05D006190 1.6e-217 759.6 469 74.2
AUR62014845 Chenopodium quinoa HOM05D004979 ORTHO05D006190 1.2e-212 743.4 522 67.2
Aa31LG2G11270 Aethionema arabicum HOM05D004979 ORTHO05D006190 2.1e-212 742.7 531 66.5
Duzib114G0072 Durio zibethinus HOM05D004979 ORTHO05D006190 4.6e-212 741.5 509 68.0
unitig_22.g6127 Utricularia gibba HOM05D004979 ORTHO05D006190 3.9e-211 738.4 563 63.4
Nitab4.5_0000081g0190 Nicotiana tabacum HOM05D004979 ORTHO05D006190 6.8e-208 727.6 518 67.0
ATR0730G180 Amborella trichopoda HOM05D004979 ORTHO05D006190 2.2e-206 722.6 525 64.0
Os05g0144000 Oryza sativa ssp. japonica HOM05D004979 ORTHO05D006190 1.4e-205 719.9 516 65.3
Zm00001eb108680 Zea mays HOM05D004979 ORTHO05D006190 4.6e-204 714.9 517 64.6
Peaxi162Scf00212g00515 Petunia axillaris HOM05D004979 ORTHO05D006190 1.6e-201 706.4 516 66.5
TAR636G2920 Trochodendron aralioides HOM05D004979 ORTHO05D006190 1.6e-201 706.4 440 75.0
vmacro19800 Vaccinium macrocarpon HOM05D004979 ORTHO05D006190 3.6e-201 705.3 695 52.4
Haze_12430 Corylus avellana HOM05D004979 ORTHO05D006190 4.7e-201 704.9 600 60.0
SGA_v2.0_scaffold279G46769 Striga asiatica HOM05D004979 ORTHO05D006190 1.2e-199 700.3 523 64.1
FAN23G0202 Fragaria x ananassa HOM05D004979 ORTHO05D006190 2.6e-199 699.1 520 65.2
SEGI_04903 Sequoiadendron giganteum HOM05D004979 ORTHO05D006190 6.0e-196 688.0 521 60.5
Sc05g0004380 Simmondsia chinensis HOM05D004979 ORTHO05D006190 1.1e-194 683.7 436 71.1
vmacro22232 Vaccinium macrocarpon HOM05D004979 ORTHO05D006190 2.6e-191 672.5 548 61.5
Prupe.1G583400 Prunus persica HOM05D004979 ORTHO05D006190 5.8e-191 671.4 400 76.0
FAN03G1290 Fragaria x ananassa HOM05D004979 ORTHO05D006190 1.7e-190 669.8 578 58.7
Lsat_1_v5_gn_5_7121 Lactuca sativa HOM05D004979 ORTHO05D006190 3.9e-187 658.7 520 62.7
Lj9A238G55 Lonicera japonica HOM05D004979 ORTHO05D006190 7.4e-186 654.4 502 63.5
Nitab4.5_0002303g0020 Nicotiana tabacum HOM05D004979 ORTHO05D006190 1.6e-185 653.3 518 61.4
FvH4_7g05560 Fragaria vesca HOM05D004979 ORTHO05D006190 5.3e-184 648.3 427 71.7
HPP92_023772 Vanilla planifolia HOM05D004979 ORTHO05D006190 8.2e-177 624.4 419 68.3
Nn7g38157 Nelumbo nucifera HOM05D004979 ORTHO05D006190 7.9e-172 607.8 491 61.1
Mapoly0050s0014 Marchantia polymorpha HOM05D004979 ORTHO05D006190 6.7e-171 604.7 534 54.5
Pp3c2_38270 Physcomitrium patens HOM05D004979 ORTHO05D006190 2.7e-164 582.8 537 52.3
GSVIVG01007211001 Vitis vinifera HOM05D004979 ORTHO05D006190 1.2e-159 567.4 362 73.8
SMO145G0201 Selaginella moellendorffii HOM05D004979 ORTHO05D006190 4.5e-159 565.5 510 54.5
FAN10G2429 Fragaria x ananassa HOM05D004979 ORTHO05D006190 1.4e-155 553.9 517 55.9
SalBow5G4822 Salvia bowleyana HOM05D004979 ORTHO05D006190 3.5e-151 539.3 332 75.3
GSVIVG01006954001 Vitis vinifera HOM05D004979 ORTHO05D006190 2.2e-142 510.0 304 77.3
DCAR_006591 Daucus carota HOM05D004979 ORTHO05D006190 1.9e-141 506.9 518 51.0
AagrBONN_evm.TU.Sc2ySwM_344.2018 Anthoceros agrestis HOM05D004979 ORTHO05D006190 3.6e-140 502.7 435 55.4
SalBow3G2171 Salvia bowleyana HOM05D004979 ORTHO05D006190 4.0e-139 499.2 348 69.0
CBR_g16989 Chara braunii HOM05D004979 ORTHO05D006190 1.8e-136 490.3 549 45.2
Rhsim04G0165200 Rhododendron simsii HOM05D004979 ORTHO05D006190 7.5e-130 468.4 355 63.9
Lj5C315T9 Lonicera japonica HOM05D004979 ORTHO05D006190 2.8e-129 466.5 283 75.3
AUR62017041 Chenopodium quinoa HOM05D004979 ORTHO05D006190 8.6e-126 454.9 343 64.1
Ca_17455_v3 Cicer arietinum L. HOM05D004979 ORTHO05D006190 1.4e-123 447.6 229 92.1
GSVIVG01002014001 Vitis vinifera HOM05D004979 ORTHO05D006190 4.4e-122 442.6 252 79.8
Hma1.2p1_0759F.1_g213770 Hydrangea macrophylla HOM05D004979 ORTHO05D006190 3.2e-112 409.8 229 80.3
Hma1.2p1_0759F.1_g213813 Hydrangea macrophylla HOM05D004979 ORTHO05D006190 3.2e-112 409.8 229 80.3
Sopen04g025050 Solanum pennellii HOM05D004979 ORTHO05D006190 1.0e-110 404.8 230 79.1
COL.COLO4_28214 Corchorus olitorius HOM05D004979 ORTHO05D006190 4.0e-107 392.9 286 66.1
Dinv22420 Davidia involucrata HOM05D004979 ORTHO05D006190 1.7e-86 324.3 527 38.0
GSVIVG01007210001 Vitis vinifera HOM05D004979 ORTHO05D006190 1.3e-84 318.2 206 69.9
GSVIVG01007430001 Vitis vinifera HOM05D004979 ORTHO05D006190 1.8e-83 314.3 206 69.9
Cpa.g.sc46.4 Carica papaya HOM05D004979 ORTHO05D006190 1.9e-80 304.3 165 82.4
Cre14.g617150 Chlamydomonas reinhardtii HOM05D004979 ORTHO05D006190 1.8e-75 287.7 538 34.8
PRCOL_00000039 Prasinoderma coloniale HOM05D004979 ORTHO05D006190 3.4e-74 283.5 539 36.0
Cpa.g.sc46.2 Carica papaya HOM05D004979 ORTHO05D006190 8.4e-73 278.9 240 58.3
Cfa022844 Carpinus fangiana HOM05D004979 ORTHO05D006190 1.1e-72 278.5 556 32.9
MCO11G558 Micromonas commoda HOM05D004979 ORTHO05D006190 3.3e-69 266.9 494 34.8
CAN.G1164.35 Capsicum annuum HOM05D004979 ORTHO05D006190 2.8e-68 263.8 169 72.2
HanXRQChr14g0439781 Helianthus annuus HOM05D004979 ORTHO05D006190 1.3e-57 228.4 190 58.9
Actinidia01657 Actinidia chinensis HOM05D004979 ORTHO05D006190 8.4e-57 225.7 365 40.8
SHI20228 Sapria himalayana HOM05D004979 ORTHO05D006190 2.9e-49 200.7 251 45.0
ClCG03G002030 Citrullus lanatus HOM05D004979 ORTHO05D006190 7.9e-47 192.6 179 53.1
DCAR_032148 Daucus carota HOM05D004979 ORTHO05D006190 1.3e-41 175.3 337 33.8
Lsat_1_v5_gn_8_74721 Lactuca sativa HOM05D004979 ORTHO05D006190 5.3e-35 153.3 85 75.3
GSVIVG01004371001 Vitis vinifera HOM05D004979 ORTHO05D006190 7.2e-32 142.9 103 68.0
CDE04G1277 Ceratophyllum demersum HOM05D004979 ORTHO05D006190 3.6e-31 140.6 99 66.7
QL03p011256 Quercus lobata HOM05D004979 ORTHO05D006190 2.0e-29 134.8 78 80.8
MBI07_g39750_MAGBIO Magnolia biondii HOM05D004979 ORTHO05D006190 5.7e-29 133.3 140 52.9
Actinidia27722 Actinidia chinensis HOM05D004979 ORTHO05D006190 1.3e-28 132.1 194 40.7
SHI32754 Sapria himalayana HOM05D001374 ORTHO05D004296 9.1e-27 125.9 119 52.9
Lsat_1_v5_gn_8_74741 Lactuca sativa HOM05D004979 ORTHO05D006190 8.5e-25 119.4 102 58.8
FAN19G1386 Fragaria x ananassa HOM05D004979 ORTHO05D006190 1.0e-22 112.5 85 61.2
Rhsim05G0125000 Rhododendron simsii HOM05D004979 ORTHO05D006190 5.0e-17 93.6 270 30.4
Medtr3g085120 Medicago truncatula HOM05D002545 ORTHO05D002335 5.5e-16 90.1 119 43.7
Aqoxy2G02599 Aquilegia oxysepala HOM05D004979 ORTHO05D006190 2.0e-13 81.6 41 75.6
AagrBONN_evm.TU.Sc2ySwM_117.715 Anthoceros agrestis HOM05D004979 ORTHO05D006190 1.4e-11 75.5 97 42.3
SHI20227 Sapria himalayana HOM05D004979 ORTHO05D006190 2.7e-10 71.2 50 60.0
Sc05g0003730 Simmondsia chinensis HOM05D004979 ORTHO05D006190 3.8e-09 67.4 81 44.4
CBR_g72775 Chara braunii HOM05D004979 ORTHO05D132771 3.6e-07 60.8 213 26.3
FAN23G1107 Fragaria x ananassa HOM05D003102 ORTHO05D005239 4.0e-06 57.4 44 61.4
FAN19G1644 Fragaria x ananassa HOM05D004979 ORTHO05D006190 6.8e-06 56.6 109 37.6


User provided reference genes

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