Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G18790 Trifolium pratense HOM05D007829 ORTHO05D009903 6.0e-97 357.5 173 100.0
Psat1g175960 Pisum sativum HOM05D007829 ORTHO05D009903 6.0e-73 277.7 174 78.2
Medtr2g025760 Medicago truncatula HOM05D007829 ORTHO05D009903 1.6e-65 253.1 159 81.1
Lj6g0010113 Lotus japonicus HOM05D007829 ORTHO05D009903 7.9e-57 224.2 175 69.7
Glyma.09G010400 Glycine max HOM05D007829 ORTHO05D009903 9.0e-45 184.1 173 57.2
Glyma.15G114900 Glycine max HOM05D007829 ORTHO05D009903 3.4e-44 182.2 174 59.2
arahy.Tifrunner.gnm1.ann1.G424KC Arachis hypogaea HOM05D007829 ORTHO05D009903 7.4e-39 164.5 180 50.6
Phvul.006G143000 Phaseolus vulgaris HOM05D007829 ORTHO05D009903 1.3e-38 163.7 175 54.9
VMungo0540G1426 Vigna mungo HOM05D007829 ORTHO05D009903 1.5e-36 156.8 173 49.7
Lalb_Chr15g0088001 Lupinus albus HOM05D007829 ORTHO05D009903 4.2e-34 148.7 173 53.8
CiPaw.10G078200 Carya illinoinensis HOM05D007829 ORTHO05D009903 5.1e-32 141.7 107 59.8
Manes.08G071000 Manihot esculenta HOM05D007829 ORTHO05D009903 8.8e-32 141.0 113 59.3
TPR.G13103 Trifolium pratense HOM05D007829 ORTHO05D009903 1.5e-31 140.2 65 100.0
Ciclev10018278m.g Citrus clementina HOM05D007829 ORTHO05D009903 2.0e-31 139.8 107 60.7
Thecc.06G233800 Theobroma cacao HOM05D007829 ORTHO05D009903 1.7e-30 136.7 118 53.4
Cfa000096 Carpinus fangiana HOM05D007829 ORTHO05D009903 2.8e-30 136.0 151 45.7
Rhsim02G0099400 Rhododendron simsii HOM05D007829 ORTHO05D009903 8.2e-30 134.4 146 48.6
Prupe.4G010000 Prunus persica HOM05D007829 ORTHO05D009903 1.8e-29 133.3 106 57.5
TWI38G1785 Tripterygium wilfordii HOM05D007829 ORTHO05D009903 1.2e-28 130.6 105 57.1
CSS0014217 Camellia sinensis var. sinensis HOM05D007829 ORTHO05D009903 3.5e-28 129.0 158 46.2
PSO675G8147 Papaver somniferum HOM05D007829 ORTHO05D009903 7.7e-28 127.9 156 42.9
Dinv07407 Davidia involucrata HOM05D007829 ORTHO05D009903 1.0e-27 127.5 138 48.6
Actinidia39272 Actinidia chinensis HOM05D007829 ORTHO05D009903 1.3e-27 127.1 164 45.1
Hma1.2p1_0657F.1_g197120 Hydrangea macrophylla HOM05D007829 ORTHO05D009903 2.2e-27 126.3 152 44.7
Potri.016G013200 Populus trichocarpa HOM05D007829 ORTHO05D009903 3.8e-27 125.6 107 52.3
PSO541G5076 Papaver somniferum HOM05D007829 ORTHO05D009903 6.5e-27 124.8 113 50.4
Duzib235G0645 Durio zibethinus HOM05D007829 ORTHO05D009903 1.1e-26 124.0 118 49.2
Cpa.g.sc75.113 Carica papaya HOM05D007829 ORTHO05D009903 1.5e-26 123.6 98 55.1
Aqoxy2G02687 Aquilegia oxysepala HOM05D007829 ORTHO05D009903 1.9e-26 123.2 180 37.8
PGR004G1136 Punica granatum HOM05D007829 ORTHO05D009903 2.5e-26 122.9 123 48.0
Eucgr.D01411 Eucalyptus grandis HOM05D007829 ORTHO05D009903 4.2e-26 122.1 85 64.7
Nn1g07397 Nelumbo nucifera HOM05D007829 ORTHO05D009903 4.2e-26 122.1 116 48.3
MD10G1332100 Malus domestica HOM05D007829 ORTHO05D009903 7.2e-26 121.3 148 44.6
Cc00_g34400 Coffea canephora HOM05D007829 ORTHO05D009903 2.1e-25 119.8 120 50.8
COL.COLO4_31889 Corchorus olitorius HOM05D007829 ORTHO05D009903 2.1e-25 119.8 112 50.0
arahy.Tifrunner.gnm1.ann1.10XUBW Arachis hypogaea HOM05D007829 ORTHO05D009903 1.4e-24 117.1 151 44.4
Gohir.D10G008900 Gossypium hirsutum HOM05D007829 ORTHO05D009903 6.7e-24 114.8 110 50.0
Gorai.011G009700 Gossypium raimondii HOM05D007829 ORTHO05D009903 6.7e-24 114.8 110 50.0
Gohir.A10G009200 Gossypium hirsutum HOM05D007829 ORTHO05D009903 8.8e-24 114.4 110 50.0
DCAR_004889 Daucus carota HOM05D003856 ORTHO05D004547 2.6e-23 112.8 100 50.0
TAR627G0564 Trochodendron aralioides HOM05D007829 ORTHO05D009903 5.7e-23 111.7 151 42.4
Sabra16G0002200 Salix brachista HOM05D007829 ORTHO05D009903 9.7e-23 110.9 129 43.4
TAR627G1193 Trochodendron aralioides HOM05D007829 ORTHO05D009903 1.3e-22 110.5 111 46.8
Sc05g0009620 Simmondsia chinensis HOM05D007829 ORTHO05D009903 1.1e-21 107.5 119 43.7
THA.LOC104813576 Tarenaya hassleriana HOM05D007829 ORTHO05D009903 2.6e-20 102.8 118 39.8
CDE11G1237 Ceratophyllum demersum HOM05D007829 ORTHO05D009903 1.0e-19 100.9 129 42.6
Peaxi162Scf00352g00215 Petunia axillaris HOM05D007829 ORTHO05D009903 1.3e-19 100.5 165 35.2
Solyc11g012300.1 Solanum lycopersicum HOM05D007829 ORTHO05D009903 1.3e-19 100.5 140 39.3
QL05p069622 Quercus lobata HOM05D007829 ORTHO05D009903 1.7e-19 100.1 195 33.8
SGA_v2.0_scaffold4G01872 Striga asiatica HOM05D007829 ORTHO05D009903 5.0e-19 98.6 110 45.5
CARHR229280 Cardamine hirsuta HOM05D007829 ORTHO05D009903 6.5e-19 98.2 86 50.0
Sopen11g007080 Solanum pennellii HOM05D007829 ORTHO05D009903 1.9e-18 96.7 81 53.1
ATR0712G049 Amborella trichopoda HOM05D007829 ORTHO05D009903 3.2e-18 95.9 129 40.3
A01p13730 Brassica napus HOM05D007829 ORTHO05D009903 5.5e-18 95.1 87 47.1
C01p16640 Brassica napus HOM05D007829 ORTHO05D009903 7.2e-18 94.7 85 48.2
BraA01t01318Z Brassica rapa HOM05D007829 ORTHO05D009903 7.2e-18 94.7 86 48.8
PGSC0003DMG400013350 Solanum tuberosum HOM05D007829 ORTHO05D009903 7.2e-18 94.7 81 51.9
BcaC09g51100 Brassica carinata HOM05D007829 ORTHO05D009903 9.4e-18 94.4 151 34.4
BolC1t01611H Brassica oleracea HOM05D007829 ORTHO05D009903 9.4e-18 94.4 151 34.4
FAN21G3309 Fragaria x ananassa HOM05D007829 ORTHO05D009903 1.2e-17 94.0 171 36.3
Sabra16G0015800 Salix brachista HOM05D007829 ORTHO05D009903 2.1e-17 93.2 113 40.7
FvH4_3g00940 Fragaria vesca HOM05D007829 ORTHO05D009903 2.7e-17 92.8 165 35.2
Migut.M01399 Erythranthe guttata HOM05D007829 ORTHO05D009903 3.6e-17 92.4 128 40.6
MBI19_g06149_MAGBIO Magnolia biondii HOM05D007829 ORTHO05D009903 8.0e-17 91.3 102 42.2
SalBow8G1028 Salvia bowleyana HOM05D007829 ORTHO05D009903 1.4e-16 90.5 82 50.0
RcHm_v2.0_Chr5g0001461 Rosa chinensis HOM05D007829 ORTHO05D009903 1.8e-16 90.1 172 39.0
unitig_748.g7131 Utricularia gibba HOM05D007829 ORTHO05D009903 2.3e-16 89.7 173 33.5
Oeu002768.1 Olea europaea HOM05D007829 ORTHO05D009903 6.8e-16 88.2 80 45.0
CANSAT56G1477 Cannabis sativa HOM05D007829 ORTHO05D009903 1.2e-15 87.4 115 43.5
FAN25G0937 Fragaria x ananassa HOM05D007829 ORTHO05D009903 4.4e-15 85.5 171 34.5
Sed0017863 Sechium edule HOM05D007829 ORTHO05D009903 2.2e-14 83.2 95 44.2
Sp7g20500 Schrenkiella parvula HOM05D007829 ORTHO05D009903 8.3e-14 81.3 102 39.2
AT4G22370 Arabidopsis thaliana HOM05D007829 ORTHO05D009903 2.7e-12 76.3 105 37.1
Carub.0007s1893 Capsella rubella HOM05D007829 ORTHO05D009903 5.0e-11 72.0 65 49.2
MBI16_g31712_MAGBIO Magnolia biondii HOM05D007829 ORTHO05D009903 8.0e-09 64.7 82 37.8
AT5G41470 Arabidopsis thaliana HOM05D002745 ORTHO05D002945 4.0e-08 62.4 104 32.7
Sp7g00520 Schrenkiella parvula HOM05D002745 ORTHO05D002945 8.8e-08 61.2 79 36.7
AL7G47950 Arabidopsis lyrata HOM05D002745 ORTHO05D002945 1.5e-07 60.5 104 30.8
Carub.0007s3403 Capsella rubella HOM05D002745 ORTHO05D002945 9.8e-07 57.8 110 29.1
CSS0032449 Camellia sinensis var. sinensis HOM05D002745 ORTHO05D002945 1.3e-06 57.4 79 34.2
Duzib205G0538 Durio zibethinus HOM05D002745 ORTHO05D002945 1.7e-06 57.0 114 30.7
Nitab4.5_0015422g0020 Nicotiana tabacum HOM05D007829 ORTHO05D009903 2.8e-06 56.2 164 25.6
Rhsim07G0088000 Rhododendron simsii HOM05D002745 ORTHO05D002945 2.8e-06 56.2 161 24.2
Thecc.03G284700 Theobroma cacao HOM05D002745 ORTHO05D002945 2.8e-06 56.2 111 29.7
unitig_5.g30996 Utricularia gibba HOM05D000093 ORTHO05D001309 2.8e-06 56.2 81 38.3
DCAR_000629 Daucus carota HOM05D002745 ORTHO05D002945 3.7e-06 55.8 82 36.6


User provided reference genes

Program Settings