Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G18724 Trifolium pratense HOM05D004540 ORTHO05D004852 7.8e-38 159.8 74 100.0
Medtr3g095690 Medicago truncatula HOM05D004540 ORTHO05D004852 5.4e-31 137.1 72 90.3
Medtr8g092860 Medicago truncatula HOM05D004540 ORTHO05D004852 6.9e-26 120.2 72 75.0
Phvul.009G148100 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 2.6e-25 118.2 72 73.6
TPR.G37334 Trifolium pratense HOM05D004540 ORTHO05D004852 4.9e-24 114.0 72 70.8
Lj4g0001726 Lotus japonicus HOM05D004540 ORTHO05D004852 4.2e-23 110.9 75 68.0
Lalb_Chr12g0203271 Lupinus albus HOM05D004540 ORTHO05D004852 3.5e-22 107.8 68 72.1
Phvul.002G270200 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 4.6e-22 107.5 74 63.5
Thecc.01G124700 Theobroma cacao HOM05D004540 ORTHO05D004852 3.0e-21 104.8 72 66.7
Glyma.04G215100 Glycine max HOM05D004540 ORTHO05D004852 8.7e-21 103.2 51 84.3
Cfa002837 Carpinus fangiana HOM05D004540 ORTHO05D004852 1.1e-20 102.8 72 68.1
Gohir.A11G055800 Gossypium hirsutum HOM05D004540 ORTHO05D004852 1.5e-20 102.4 73 67.1
CiPaw.03G127700 Carya illinoinensis HOM05D004540 ORTHO05D004852 3.3e-20 101.3 64 75.0
Gohir.D11G059900 Gossypium hirsutum HOM05D004540 ORTHO05D004852 4.3e-20 100.9 73 65.8
Gorai.007G064600 Gossypium raimondii HOM05D004540 ORTHO05D004852 4.3e-20 100.9 73 65.8
Glyma.08G147100 Glycine max HOM05D004540 ORTHO05D004852 9.6e-20 99.8 56 78.6
Glyma.05G189500 Glycine max HOM05D004540 ORTHO05D004852 2.1e-19 98.6 56 78.6
QL06p029800 Quercus lobata HOM05D004540 ORTHO05D004852 2.1e-19 98.6 71 64.8
Prupe.6G159700 Prunus persica HOM05D004540 ORTHO05D004852 3.6e-19 97.8 70 67.1
CiPaw.04G085800 Carya illinoinensis HOM05D004540 ORTHO05D004852 6.2e-19 97.1 64 67.2
Haze_25134 Corylus avellana HOM05D004540 ORTHO05D004852 1.4e-18 95.9 66 68.2
Lalb_Chr08g0238521 Lupinus albus HOM05D004540 ORTHO05D004852 1.4e-18 95.9 66 69.7
Glyma.06G151100 Glycine max HOM05D004540 ORTHO05D004852 1.8e-18 95.5 50 82.0
Lalb_Chr07g0184521 Lupinus albus HOM05D004540 ORTHO05D004852 1.5e-17 92.4 72 59.7
Cpa.g.sc42.109 Carica papaya HOM05D004540 ORTHO05D004852 4.5e-17 90.9 70 62.9
Lalb_Chr13g0296521 Lupinus albus HOM05D004540 ORTHO05D004852 7.6e-17 90.1 72 59.7
Cc07_g17790 Coffea canephora HOM05D004540 ORTHO05D004852 9.9e-17 89.7 70 57.1
Ciclev10026873m.g Citrus clementina HOM05D004540 ORTHO05D004852 3.8e-16 87.8 72 59.7
Potri.007G110700 Populus trichocarpa HOM05D004540 ORTHO05D004852 6.4e-16 87.0 71 57.7
Potri.005G057400 Populus trichocarpa HOM05D004540 ORTHO05D004852 8.4e-16 86.7 71 57.7
Gohir.A05G386200 Gossypium hirsutum HOM05D004540 ORTHO05D004852 1.1e-15 86.3 81 58.0
Gohir.D04G023300 Gossypium hirsutum HOM05D004540 ORTHO05D004852 1.1e-15 86.3 81 58.0
Gorai.012G033600 Gossypium raimondii HOM05D004540 ORTHO05D004852 1.1e-15 86.3 81 58.0
Gohir.A10G083507 Gossypium hirsutum HOM05D004540 ORTHO05D004852 1.4e-15 85.9 73 57.5
Gohir.D10G105766 Gossypium hirsutum HOM05D004540 ORTHO05D004852 2.4e-15 85.1 72 52.8
Gorai.011G115500 Gossypium raimondii HOM05D004540 ORTHO05D004852 2.4e-15 85.1 72 52.8
Manes.13G071600 Manihot esculenta HOM05D004540 ORTHO05D004852 1.6e-14 82.4 75 58.7
MD01G1010200 Malus domestica HOM05D004540 ORTHO05D004852 1.0e-13 79.7 72 58.3
Manes.12G152100 Manihot esculenta HOM05D004540 ORTHO05D004852 1.0e-13 79.7 74 55.4
Sed0025334 Sechium edule HOM05D004540 ORTHO05D004852 3.0e-13 78.2 75 60.0
Lalb_Chr21g0305401 Lupinus albus HOM05D004540 ORTHO05D004852 1.5e-12 75.9 64 54.7
Eucgr.I00231 Eucalyptus grandis HOM05D004540 ORTHO05D004852 2.5e-12 75.1 67 59.7
FvH4_1g23990 Fragaria vesca HOM05D004540 ORTHO05D004852 3.3e-12 74.7 84 48.8
FAN23G3045 Fragaria x ananassa HOM05D004540 ORTHO05D004852 3.3e-12 74.7 84 48.8
FAN19G2513 Fragaria x ananassa HOM05D004540 ORTHO05D004852 4.3e-12 74.3 84 48.8
Lj5g0026068 Lotus japonicus HOM05D004540 ORTHO05D004852 5.6e-12 73.9 69 55.1
RcHm_v2.0_Chr2g0120121 Rosa chinensis HOM05D004540 ORTHO05D004852 5.6e-12 73.9 84 48.8
FAN26G2008 Fragaria x ananassa HOM05D004540 ORTHO05D004852 7.4e-12 73.6 84 47.6
MELO3C008039.2 Cucumis melo HOM05D004540 ORTHO05D004852 9.6e-12 73.2 48 72.9
Lalb_Chr06g0161521 Lupinus albus HOM05D004540 ORTHO05D004852 1.3e-11 72.8 68 50.0
Nn1g06160 Nelumbo nucifera HOM05D004540 ORTHO05D004852 1.3e-11 72.8 72 52.8
CARHR094090 Cardamine hirsuta HOM05D004540 ORTHO05D004852 2.8e-11 71.6 77 51.9
Nn5g28680 Nelumbo nucifera HOM05D004540 ORTHO05D004852 2.8e-11 71.6 72 48.6
AT3G18715 Arabidopsis thaliana HOM05D004540 ORTHO05D004852 3.7e-11 71.2 75 50.7
CsaV3_6G041820 Cucumis sativus L. HOM05D004540 ORTHO05D004852 4.8e-11 70.9 46 73.9
Glyma.20G165500 Glycine max HOM05D004540 ORTHO05D004852 1.8e-10 68.9 69 53.6
Carub.0008s2546 Capsella rubella HOM05D004540 ORTHO05D004852 2.4e-10 68.6 59 57.6
CARHR278640 Cardamine hirsuta HOM05D004540 ORTHO05D004852 2.4e-10 68.6 67 52.2
CSS0044504 Camellia sinensis var. sinensis HOM05D004540 ORTHO05D004852 3.1e-10 68.2 72 51.4
Phvul.007G078400 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 5.3e-10 67.4 70 57.1
AT5G64667 Arabidopsis thaliana HOM05D004540 ORTHO05D004852 6.9e-10 67.0 68 50.0
Thhalv10022275m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 6.9e-10 67.0 76 50.0
BcaB04g19000 Brassica carinata HOM05D004540 ORTHO05D004852 9.0e-10 66.6 76 50.0
Migut.H01103 Erythranthe guttata HOM05D004540 ORTHO05D004852 9.0e-10 66.6 62 53.2
A05p30900 Brassica napus HOM05D004540 ORTHO05D004852 1.2e-09 66.2 75 49.3
BraA05t21932Z Brassica rapa HOM05D004540 ORTHO05D004852 1.2e-09 66.2 75 49.3
BcaC09g48828 Brassica carinata HOM05D004540 ORTHO05D004852 3.4e-09 64.7 78 47.4
C01p45480 Brassica napus HOM05D004540 ORTHO05D004852 3.4e-09 64.7 78 47.4
BolC1t04514H Brassica oleracea HOM05D004540 ORTHO05D004852 3.4e-09 64.7 78 47.4
Thhalv10005301m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 3.4e-09 64.7 67 50.7
Glyma.10G226800 Glycine max HOM05D004540 ORTHO05D004852 3.4e-09 64.7 69 52.2
DCAR_001351 Daucus carota HOM05D004540 ORTHO05D004852 5.8e-09 63.9 73 45.2
Manes.18G089800 Manihot esculenta HOM05D004540 ORTHO05D004852 5.8e-09 63.9 66 48.5
Thecc.08G147500 Theobroma cacao HOM05D004540 ORTHO05D004852 5.8e-09 63.9 73 52.1
BcaB06g25922 Brassica carinata HOM05D004540 ORTHO05D004852 7.6e-09 63.5 75 48.0
BcaNung06138 Brassica carinata HOM05D004540 ORTHO05D004852 7.6e-09 63.5 75 48.0
Thhalv10015116m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 7.6e-09 63.5 81 46.9
A03p40790 Brassica napus HOM05D004540 ORTHO05D004852 1.0e-08 63.2 76 47.4
BraA03t13237Z Brassica rapa HOM05D004540 ORTHO05D004852 1.0e-08 63.2 76 47.4
A01p35740 Brassica napus HOM05D004540 ORTHO05D004852 1.3e-08 62.8 76 46.1
C03p49670 Brassica napus HOM05D004540 ORTHO05D004852 1.3e-08 62.8 76 47.4
BolC3t17265H Brassica oleracea HOM05D004540 ORTHO05D004852 1.3e-08 62.8 76 47.4
BraA01t03656Z Brassica rapa HOM05D004540 ORTHO05D004852 1.3e-08 62.8 76 46.1
Migut.L00808 Erythranthe guttata HOM05D004540 ORTHO05D004852 1.3e-08 62.8 82 39.0
SGA_v2.0_scaffold137G35143 Striga asiatica HOM05D004540 ORTHO05D004852 1.3e-08 62.8 72 47.2
BcaC05g28580 Brassica carinata HOM05D004540 ORTHO05D004852 1.7e-08 62.4 75 48.0
C05p46830 Brassica napus HOM05D004540 ORTHO05D004852 1.7e-08 62.4 75 48.0
BolC5t33413H Brassica oleracea HOM05D004540 ORTHO05D004852 1.7e-08 62.4 75 48.0
TPR.G10141 Trifolium pratense HOM05D004540 ORTHO05D004852 1.7e-08 62.4 73 49.3
CiPaw.16G014800 Carya illinoinensis HOM05D004540 ORTHO05D004852 2.9e-08 61.6 69 49.3
Medtr1g099210 Medicago truncatula HOM05D004540 ORTHO05D004852 2.9e-08 61.6 64 50.0
AL8G42080 Arabidopsis lyrata HOM05D004540 ORTHO05D004852 3.8e-08 61.2 59 52.5
BcaB04g20754 Brassica carinata HOM05D004540 ORTHO05D004852 3.8e-08 61.2 76 44.7
DCAR_014344 Daucus carota HOM05D004540 ORTHO05D004852 3.8e-08 61.2 76 43.4
BcaB02g09810 Brassica carinata HOM05D004540 ORTHO05D004852 8.4e-08 60.1 66 47.0
Glyma.16G170400 Glycine max HOM05D004540 ORTHO05D004852 8.4e-08 60.1 71 43.7
AT5G09805 Arabidopsis thaliana HOM05D004540 ORTHO05D004852 1.4e-07 59.3 89 40.4
Prupe.8G024400 Prunus persica HOM05D004540 ORTHO05D004852 2.5e-07 58.5 71 47.9
BcaC01g02698 Brassica carinata HOM05D004540 ORTHO05D004852 3.2e-07 58.2 66 47.0
A06p31460 Brassica napus HOM05D004540 ORTHO05D004852 3.2e-07 58.2 66 47.0
C03p61500 Brassica napus HOM05D004540 ORTHO05D004852 3.2e-07 58.2 66 47.0
BolC3t18411H Brassica oleracea HOM05D004540 ORTHO05D004852 3.2e-07 58.2 66 47.0
BraA06t26083Z Brassica rapa HOM05D004540 ORTHO05D004852 3.2e-07 58.2 66 47.0
AL6G20210 Arabidopsis lyrata HOM05D004540 ORTHO05D004852 4.2e-07 57.8 89 40.4
Glyma.02G084000 Glycine max HOM05D004540 ORTHO05D004852 4.2e-07 57.8 53 52.8
A10p27650 Brassica napus HOM05D004540 ORTHO05D004852 5.5e-07 57.4 85 41.2
Phvul.004G098900 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 1.2e-06 56.2 70 45.7
arahy.Tifrunner.gnm1.ann1.M3AF87 Arachis hypogaea HOM05D004540 ORTHO05D004852 1.6e-06 55.8 75 50.7
Haze_17734 Corylus avellana HOM05D004540 ORTHO05D004852 1.6e-06 55.8 68 52.9
Potri.005G189900 Populus trichocarpa HOM05D004540 ORTHO05D004852 1.6e-06 55.8 66 45.5
QL02p024551 Quercus lobata HOM05D004540 ORTHO05D004852 2.1e-06 55.5 68 41.2
Carub.0003s1849 Capsella rubella HOM05D004540 ORTHO05D004852 3.5e-06 54.7 35 62.9
Migut.L00903 Erythranthe guttata HOM05D004540 ORTHO05D004852 3.5e-06 54.7 73 43.8
BcaB08g37167 Brassica carinata HOM05D004540 ORTHO05D004852 4.6e-06 54.3 85 38.8
BcaB04g19982 Brassica carinata HOM05D004540 ORTHO05D004852 6.0e-06 53.9 66 47.0
Manes.02G177000 Manihot esculenta HOM05D004540 ORTHO05D004852 6.0e-06 53.9 75 41.3
Potri.002G070401 Populus trichocarpa HOM05D004540 ORTHO05D004852 6.0e-06 53.9 72 43.1
Ciclev10003011m.g Citrus clementina HOM05D004540 ORTHO05D004852 7.9e-06 53.5 77 42.9
Sabra02G0055000 Salix brachista HOM05D004540 ORTHO05D004852 7.9e-06 53.5 70 47.1


User provided reference genes

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