Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G18722 Trifolium pratense HOM05D006880 ORTHO05D008638 3.4e-101 371.7 194 100.0
Psat5g063920 Pisum sativum HOM05D006880 ORTHO05D008638 2.4e-94 349.0 194 90.7
Ca_16914_v3 Cicer arietinum L. HOM05D006880 ORTHO05D008638 4.1e-94 348.2 194 94.8
Medtr3g095480 Medicago truncatula HOM05D006880 ORTHO05D008638 5.3e-94 347.8 196 94.9
Lalb_Chr11g0068241 Lupinus albus HOM05D006880 ORTHO05D008638 1.3e-87 326.6 194 88.1
QL06p051802 Quercus lobata HOM05D006880 ORTHO05D008638 2.2e-87 325.9 194 85.1
CANSAT01G0776 Cannabis sativa HOM05D006880 ORTHO05D008638 1.2e-85 320.1 196 83.7
CiPaw.03G123600 Carya illinoinensis HOM05D006880 ORTHO05D008638 1.5e-85 319.7 199 81.4
Phvul.009G147400 Phaseolus vulgaris HOM05D006880 ORTHO05D008638 1.5e-85 319.7 199 85.4
FAN23G3120 Fragaria x ananassa HOM05D006880 ORTHO05D008638 1.0e-84 317.0 195 80.0
FvH4_1g23610 Fragaria vesca HOM05D006880 ORTHO05D008638 1.3e-84 316.6 195 80.0
FAN19G0460 Fragaria x ananassa HOM05D006880 ORTHO05D008638 1.3e-84 316.6 195 80.0
FAN28G1236 Fragaria x ananassa HOM05D006880 ORTHO05D008638 1.3e-84 316.6 195 80.0
Lj1g0010031 Lotus japonicus HOM05D006880 ORTHO05D008638 5.0e-84 314.7 194 83.5
FAN26G3452 Fragaria x ananassa HOM05D006880 ORTHO05D008638 6.5e-84 314.3 195 79.5
Prupe.6G162500 Prunus persica HOM05D006880 ORTHO05D008638 6.5e-84 314.3 195 80.0
RcHm_v2.0_Chr2g0119191 Rosa chinensis HOM05D006880 ORTHO05D008638 6.5e-84 314.3 195 79.5
Glyma.06G149800 Glycine max HOM05D006880 ORTHO05D008638 8.5e-84 313.9 196 83.7
Lalb_Chr08g0238661 Lupinus albus HOM05D006880 ORTHO05D008638 3.2e-83 312.0 197 83.2
Glyma.09G116700 Glycine max HOM05D006880 ORTHO05D008638 3.6e-82 308.5 195 82.1
Glyma.09G116500 Glycine max HOM05D006880 ORTHO05D008638 3.0e-81 305.4 196 80.6
Oeu054906.1 Olea europaea HOM05D006880 ORTHO05D008638 3.0e-81 305.4 197 79.7
CiPaw.04G083800 Carya illinoinensis HOM05D006880 ORTHO05D008638 6.7e-81 304.3 194 75.8
Atru.chr4.544 Acer truncatum HOM05D006880 ORTHO05D008638 8.8e-81 303.9 196 77.6
Cpa.g.sc453.1 Carica papaya HOM05D006880 ORTHO05D008638 8.8e-81 303.9 201 79.6
Sabra16G0194800 Salix brachista HOM05D006880 ORTHO05D008638 2.0e-80 302.8 199 80.9
SGA_v2.0_scaffold178G39501 Striga asiatica HOM05D006880 ORTHO05D008638 5.7e-80 301.2 202 76.2
TWI79G0189 Tripterygium wilfordii HOM05D006880 ORTHO05D008638 9.7e-80 300.4 195 78.5
Duzib147G0678 Durio zibethinus HOM05D006880 ORTHO05D008638 1.7e-79 299.7 197 77.7
Potri.019G006500 Populus trichocarpa HOM05D006880 ORTHO05D008638 1.7e-79 299.7 197 77.7
Gohir.A10G083300 Gossypium hirsutum HOM05D006880 ORTHO05D008638 2.8e-79 298.9 195 78.5
Gohir.D10G105600 Gossypium hirsutum HOM05D006880 ORTHO05D008638 2.8e-79 298.9 195 78.5
Gorai.011G115200 Gossypium raimondii HOM05D006880 ORTHO05D008638 2.8e-79 298.9 195 78.5
Manes.12G148400 Manihot esculenta HOM05D006880 ORTHO05D008638 2.8e-79 298.9 202 79.2
Thecc.01G120600 Theobroma cacao HOM05D006880 ORTHO05D008638 3.7e-79 298.5 198 80.8
Solyc11g005390.3 Solanum lycopersicum HOM05D006880 ORTHO05D008638 4.8e-79 298.1 194 75.8
Sopen11g001400 Solanum pennellii HOM05D006880 ORTHO05D008638 4.8e-79 298.1 194 75.8
Potri.001G309000 Populus trichocarpa HOM05D006880 ORTHO05D008638 6.3e-79 297.7 201 78.6
Ciclev10026534m.g Citrus clementina HOM05D006880 ORTHO05D008638 8.2e-79 297.4 199 76.9
ClCG01G015680 Citrullus lanatus HOM05D006880 ORTHO05D008638 1.1e-78 297.0 179 82.1
COL.COLO4_22415 Corchorus olitorius HOM05D006880 ORTHO05D008638 1.1e-78 297.0 198 80.8
Sabra19G0023300 Salix brachista HOM05D006880 ORTHO05D008638 2.4e-78 295.8 197 76.6
MELO3C008029.2 Cucumis melo HOM05D006880 ORTHO05D008638 3.1e-78 295.4 176 81.8
Sabra19G0018800 Salix brachista HOM05D006880 ORTHO05D008638 3.1e-78 295.4 197 76.6
Duzib187G0911 Durio zibethinus HOM05D006880 ORTHO05D008638 5.3e-78 294.7 195 77.4
arahy.Tifrunner.gnm1.ann1.91R8ME Arachis hypogaea HOM05D006880 ORTHO05D008638 1.2e-77 293.5 195 77.4
Gorai.002G151100 Gossypium raimondii HOM05D006880 ORTHO05D008638 1.2e-77 293.5 194 77.3
PGSC0003DMG400003965 Solanum tuberosum HOM05D006880 ORTHO05D008638 2.0e-77 292.7 179 79.3
Actinidia06675 Actinidia chinensis HOM05D006880 ORTHO05D008638 3.5e-77 292.0 194 75.3
arahy.Tifrunner.gnm1.ann1.546D2B Arachis hypogaea HOM05D006880 ORTHO05D008638 3.5e-77 292.0 195 77.9
Hma1.2p1_0006F.1_g004965 Hydrangea macrophylla HOM05D006880 ORTHO05D008638 1.7e-76 289.7 197 75.1
Hma1.2p1_0025F.1_g016260 Hydrangea macrophylla HOM05D006880 ORTHO05D008638 1.7e-76 289.7 197 75.1
Hma1.2p1_1667F.1_g296585 Hydrangea macrophylla HOM05D006880 ORTHO05D008638 1.7e-76 289.7 197 75.1
Aqoxy5G02095 Aquilegia oxysepala HOM05D006880 ORTHO05D008638 2.9e-76 288.9 179 79.3
ECA247G1470 Erigeron canadensis HOM05D006880 ORTHO05D008638 6.5e-76 287.7 194 74.7
Cc07_g17330 Coffea canephora HOM05D006880 ORTHO05D008638 1.1e-75 287.0 182 78.6
HanXRQChr02g0039401 Helianthus annuus HOM05D006880 ORTHO05D008638 1.1e-75 287.0 194 74.2
Migut.H01108 Erythranthe guttata HOM05D006880 ORTHO05D008638 1.5e-75 286.6 179 79.9
PSO675G8574 Papaver somniferum HOM05D006880 ORTHO05D008638 1.5e-75 286.6 194 75.8
Nn1g06089 Nelumbo nucifera HOM05D006880 ORTHO05D008638 2.5e-75 285.8 196 75.5
PSO541G1054 Papaver somniferum HOM05D006880 ORTHO05D008638 7.2e-75 284.3 194 75.3
GSVIVG01026589001 Vitis vinifera HOM05D006880 ORTHO05D008638 7.2e-75 284.3 170 82.9
MD01G1016600 Malus domestica HOM05D006880 ORTHO05D008638 1.6e-74 283.1 198 75.3
TAR628G0678 Trochodendron aralioides HOM05D006880 ORTHO05D008638 5.2e-73 278.1 199 70.4
Lj2A591T43 Lonicera japonica HOM05D006880 ORTHO05D008638 4.4e-72 275.0 194 70.1
CSS0034618 Camellia sinensis var. sinensis HOM05D006880 ORTHO05D008638 5.7e-72 274.6 191 74.9
PGR119G1657 Punica granatum HOM05D006880 ORTHO05D008638 1.7e-71 273.1 180 78.9
CDE08G0745 Ceratophyllum demersum HOM05D006880 ORTHO05D008638 4.8e-71 271.6 180 75.6
Sc03g0004730 Simmondsia chinensis HOM05D006880 ORTHO05D008638 2.4e-70 269.2 176 75.0
AUR62017937 Chenopodium quinoa HOM05D006880 ORTHO05D008638 3.1e-70 268.9 207 68.1
Sed0021560 Sechium edule HOM05D006880 ORTHO05D008638 5.3e-70 268.1 174 75.9
THA.LOC104821864 Tarenaya hassleriana HOM05D006880 ORTHO05D008638 1.0e-68 263.8 181 72.9
HanXRQChr05g0137731 Helianthus annuus HOM05D006880 ORTHO05D008638 5.0e-68 261.5 194 71.1
BcaC02g12236 Brassica carinata HOM05D006880 ORTHO05D008638 2.5e-67 259.2 202 68.3
BcaC05g28570 Brassica carinata HOM05D006880 ORTHO05D008638 2.5e-67 259.2 202 68.3
C05p46720 Brassica napus HOM05D006880 ORTHO05D008638 2.5e-67 259.2 202 68.3
BolC5t33399H Brassica oleracea HOM05D006880 ORTHO05D008638 2.5e-67 259.2 202 68.3
MBI02_g23402_MAGBIO Magnolia biondii HOM05D006880 ORTHO05D008638 2.5e-67 259.2 179 70.4
AL3G32180 Arabidopsis lyrata HOM05D006880 ORTHO05D008638 9.4e-67 257.3 199 67.3
AT3G18800 Arabidopsis thaliana HOM05D006880 ORTHO05D008638 9.4e-67 257.3 199 67.3
Carub.0003s1862 Capsella rubella HOM05D006880 ORTHO05D008638 1.2e-66 256.9 199 67.8
Gohir.D11G233000 Gossypium hirsutum HOM05D006880 ORTHO05D008638 1.6e-66 256.5 197 71.6
HPP92_025026 Vanilla planifolia HOM05D006880 ORTHO05D008638 1.6e-66 256.5 187 69.5
HPP92_025033 Vanilla planifolia HOM05D006880 ORTHO05D008638 1.6e-66 256.5 187 69.5
Sp3g16890 Schrenkiella parvula HOM05D006880 ORTHO05D008638 2.1e-66 256.1 206 66.0
Aa31LG8G5640 Aethionema arabicum HOM05D006880 ORTHO05D008638 3.6e-66 255.4 202 67.3
ATR0772G040 Amborella trichopoda HOM05D006880 ORTHO05D008638 6.1e-66 254.6 178 70.2
BcaB06g25933 Brassica carinata HOM05D006880 ORTHO05D008638 2.3e-65 252.7 203 66.5
A05p30800 Brassica napus HOM05D006880 ORTHO05D008638 2.3e-65 252.7 205 66.3
BraA05t21922Z Brassica rapa HOM05D006880 ORTHO05D008638 2.3e-65 252.7 205 66.3
CARHR094210 Cardamine hirsuta HOM05D006880 ORTHO05D008638 5.2e-65 251.5 206 65.5
Sp1g36150 Schrenkiella parvula HOM05D006880 ORTHO05D008638 4.4e-64 248.4 198 67.2
CsaV3_6G041940 Cucumis sativus L. HOM05D006880 ORTHO05D008638 2.7e-61 239.2 150 76.7
Nn5g28731 Nelumbo nucifera HOM05D006880 ORTHO05D008638 3.5e-61 238.8 178 69.1
Peaxi162Scf00025g02313 Petunia axillaris HOM05D006880 ORTHO05D008638 1.0e-60 237.3 150 74.7
Thhalv10022284m.g Eutrema salsugineum HOM05D006880 ORTHO05D008638 2.2e-60 236.1 205 63.4
Dinv09943 Davidia involucrata HOM05D006880 ORTHO05D008638 1.2e-58 230.3 154 76.0
CDE06G1704 Ceratophyllum demersum HOM05D006880 ORTHO05D008638 6.3e-55 218.0 161 69.6
BcaC07g37070 Brassica carinata HOM05D006880 ORTHO05D008638 3.6e-50 202.2 196 59.2
Mapoly0012s0135 Marchantia polymorpha HOM05D006880 ORTHO05D008638 2.3e-49 199.5 178 55.6
A08p04110 Brassica napus HOM05D006880 ORTHO05D008638 9.2e-46 187.6 143 67.1
SMO351G0309 Selaginella moellendorffii HOM05D006880 ORTHO05D008638 6.6e-44 181.4 178 51.7
AagrBONN_evm.TU.Sc2ySwM_228.250 Anthoceros agrestis HOM05D006880 ORTHO05D008638 8.6e-44 181.0 176 52.3
Nitab4.5_0011433g0020 Nicotiana tabacum HOM05D006880 ORTHO05D008638 2.1e-42 176.4 109 76.1
Nitab4.5_0023130g0010 Nicotiana tabacum HOM05D006880 ORTHO05D008638 4.0e-41 172.2 109 74.3
SMO196G0105 Selaginella moellendorffii HOM05D006880 ORTHO05D008638 1.3e-39 167.2 181 47.5
Nn3g21133 Nelumbo nucifera HOM05D006880 ORTHO05D008638 8.3e-39 164.5 176 52.3
DCAR_016722 Daucus carota HOM05D006880 ORTHO05D008638 2.7e-37 159.5 102 76.5
Nn8g40983 Nelumbo nucifera HOM05D006880 ORTHO05D008638 1.4e-30 137.1 176 46.6
Os04g0687200 Oryza sativa ssp. japonica HOM05D006880 ORTHO05D008638 1.9e-30 136.7 123 55.3
Eucgr.B01306 Eucalyptus grandis HOM05D006880 ORTHO05D008638 5.2e-25 118.6 131 50.4
Lj6g0028046 Lotus japonicus HOM05D006880 ORTHO05D008638 4.6e-21 105.5 67 77.6
Nn3g19205 Nelumbo nucifera HOM05D006880 ORTHO05D008638 9.3e-14 81.3 69 63.8
Eucgr.B00961 Eucalyptus grandis HOM05D006880 ORTHO05D008638 4.6e-13 79.0 51 72.5
BraA08t32436Z Brassica rapa HOM05D006880 ORTHO05D008638 4.0e-09 65.9 56 64.3
Nn8g39713 Nelumbo nucifera HOM05D006880 ORTHO05D008638 9.3e-06 54.7 33 72.7


User provided reference genes

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