Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G18659 Trifolium pratense HOM05D020190 ORTHO05D018030 0.0e+00 1381.7 678 100.0
TPR.G10878 Trifolium pratense HOM05D020190 ORTHO05D018030 8.9e-104 382.1 574 43.6
TPR.G39590 Trifolium pratense HOM05D020190 ORTHO05D018030 5.6e-82 309.7 295 55.9
TPR.G8869 Trifolium pratense HOM05D020190 ORTHO05D018030 6.2e-73 279.6 360 48.6
TPR.G7402 Trifolium pratense HOM05D023930 ORTHO05D006106 6.1e-28 130.2 244 37.7
TPR.G31624 Trifolium pratense HOM05D001247 ORTHO05D018030 2.0e-26 125.2 153 50.3
TPR.G4161 Trifolium pratense HOM05D001247 ORTHO05D411878 1.7e-22 112.1 346 30.6
TPR.G35705 Trifolium pratense HOM05D023930 ORTHO05D018030 2.3e-19 101.7 225 34.7
Psat2g017160 Pisum sativum HOM05D004564 ORTHO05D006106 4.0e-11 74.3 90 46.7
Phvul.008G194400 Phaseolus vulgaris HOM05D004564 ORTHO05D006106 3.3e-10 71.2 109 43.1
VMungo0647G1349 Vigna mungo HOM05D004564 ORTHO05D006106 1.3e-09 69.3 109 42.2
Medtr5g091020 Medicago truncatula HOM05D004564 ORTHO05D006106 1.7e-09 68.9 89 44.9
arahy.Tifrunner.gnm1.ann1.THQ3DC Arachis hypogaea HOM05D004564 ORTHO05D006106 6.3e-09 67.0 89 43.8
Prupe.3G177800 Prunus persica HOM05D004564 ORTHO05D006106 1.1e-08 66.2 90 41.1
Glyma.14G030500 Glycine max HOM05D004564 ORTHO05D006106 1.8e-08 65.5 90 41.1
arahy.Tifrunner.gnm1.ann1.PNUX2Z Arachis hypogaea HOM05D004564 ORTHO05D006106 4.1e-08 64.3 90 42.2
TPR.G23048 Trifolium pratense HOM05D001247 ORTHO05D001111 4.1e-08 64.3 59 59.3
Ca_06263_v3 Cicer arietinum L. HOM05D004564 ORTHO05D006106 9.1e-08 63.2 72 48.6
TPR.G10155 Trifolium pratense HOM05D004564 ORTHO05D006106 9.1e-08 63.2 98 40.8
arahy.Tifrunner.gnm1.ann1.UKG9X7 Arachis hypogaea HOM05D004564 ORTHO05D006106 1.2e-07 62.8 72 48.6
LjContig00049g0003012 Lotus japonicus HOM05D004564 ORTHO05D006106 2.0e-07 62.0 76 44.7
Lj1g0025808 Lotus japonicus HOM05D004564 ORTHO05D006106 2.7e-07 61.6 76 46.1
Lalb_Chr10g0106571 Lupinus albus HOM05D004564 ORTHO05D006106 3.5e-07 61.2 90 38.9
MD09G1148300 Malus domestica HOM05D004564 ORTHO05D006106 5.9e-07 60.5 90 38.9
TPR.G40802 Trifolium pratense HOM05D020190 ORTHO05D411437 5.9e-07 60.5 41 70.7
Duzib133G1099 Durio zibethinus HOM05D004564 ORTHO05D006106 7.7e-07 60.1 89 39.3
CiPaw.04G137200 Carya illinoinensis HOM05D004564 ORTHO05D006106 1.0e-06 59.7 77 42.9
Gohir.A11G157200 Gossypium hirsutum HOM05D004564 ORTHO05D006106 1.0e-06 59.7 89 39.3
Gorai.007G175000 Gossypium raimondii HOM05D004564 ORTHO05D006106 1.0e-06 59.7 89 39.3
Cfa023356 Carpinus fangiana HOM05D004564 ORTHO05D006106 1.3e-06 59.3 88 39.8
QL08p045017 Quercus lobata HOM05D004564 ORTHO05D006106 1.3e-06 59.3 90 40.0
QL93p2016_0008 Quercus lobata HOM05D004564 ORTHO05D006106 1.3e-06 59.3 90 40.0
Ciclev10030760m.g Citrus clementina HOM05D004564 ORTHO05D006106 2.2e-06 58.5 84 39.3
Gohir.D11G164200 Gossypium hirsutum HOM05D004564 ORTHO05D006106 2.2e-06 58.5 89 39.3
Nn7g37923 Nelumbo nucifera HOM05D004564 ORTHO05D006106 2.2e-06 58.5 87 37.9
MELO3C016147.2 Cucumis melo HOM05D004564 ORTHO05D006106 2.9e-06 58.2 90 35.6
Haze_13558 Corylus avellana HOM05D004564 ORTHO05D006106 5.0e-06 57.4 69 43.5
CsaV3_4G007910 Cucumis sativus L. HOM05D004564 ORTHO05D006106 5.0e-06 57.4 90 35.6
Thecc.01G168400 Theobroma cacao HOM05D004564 ORTHO05D006106 5.0e-06 57.4 89 38.2
RcHm_v2.0_Chr2g0152251 Rosa chinensis HOM05D004564 ORTHO05D006106 6.5e-06 57.0 85 38.8
Sed0025117 Sechium edule HOM05D004564 ORTHO05D006106 6.5e-06 57.0 90 36.7
TPR.G40262 Trifolium pratense HOM05D062851 ORTHO05D413332 6.5e-06 57.0 32 78.1
TWI59G1136 Tripterygium wilfordii HOM05D004564 ORTHO05D006106 6.5e-06 57.0 90 36.7
PSO782G0424 Papaver somniferum HOM05D004564 ORTHO05D006106 8.5e-06 56.6 130 34.6
PGR042G1847 Punica granatum HOM05D004564 ORTHO05D006106 8.5e-06 56.6 77 39.0


User provided reference genes

Program Settings