Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G18636 Trifolium pratense HOM05D004231 ORTHO05D004814 2.2e-197 692.2 372 100.0
TPR.G5084 Trifolium pratense HOM05D004231 ORTHO05D004814 2.1e-179 632.5 380 91.8
Psat2g000680 Pisum sativum HOM05D004231 ORTHO05D004814 1.4e-159 566.6 370 83.5
Ca_10777_v3 Cicer arietinum L. HOM05D004231 ORTHO05D004814 5.0e-157 558.1 373 82.6
Medtr5g099180 Medicago truncatula HOM05D004231 ORTHO05D004814 1.1e-156 557.0 376 83.2
Psat2g000800 Pisum sativum HOM05D004231 ORTHO05D004814 1.8e-151 539.7 373 79.6
LjContig00081g0001175 Lotus japonicus HOM05D004231 ORTHO05D004814 7.9e-147 524.2 376 78.5
Lalb_Chr12g0208621 Lupinus albus HOM05D004231 ORTHO05D004814 5.9e-142 508.1 347 78.1
CANSAT25G0301 Cannabis sativa HOM05D004231 ORTHO05D004814 1.0e-141 507.3 342 78.4
arahy.Tifrunner.gnm1.ann1.9M6UE0 Arachis hypogaea HOM05D004231 ORTHO05D004814 1.1e-140 503.8 346 79.8
Glyma.14G001000 Glycine max HOM05D004231 ORTHO05D004814 4.2e-140 501.9 324 83.0
arahy.Tifrunner.gnm1.ann1.3XUX0K Arachis hypogaea HOM05D004231 ORTHO05D004814 2.7e-139 499.2 342 79.5
Sed0021373 Sechium edule HOM05D004231 ORTHO05D004814 3.9e-138 495.4 333 79.6
CsaV3_7G001970 Cucumis sativus L. HOM05D004231 ORTHO05D004814 6.7e-138 494.6 340 79.1
ClCG02G003360 Citrullus lanatus HOM05D004231 ORTHO05D004814 1.1e-137 493.8 326 81.0
CiPaw.06G115200 Carya illinoinensis HOM05D004231 ORTHO05D004814 4.4e-137 491.9 362 75.7
MELO3C015708.2 Cucumis melo HOM05D004231 ORTHO05D004814 4.4e-137 491.9 340 78.5
Lalb_Chr07g0189301 Lupinus albus HOM05D004231 ORTHO05D004814 2.2e-136 489.6 349 75.6
PGR042G2635 Punica granatum HOM05D004231 ORTHO05D004814 2.2e-136 489.6 368 71.2
MD10G1142000 Malus domestica HOM05D004231 ORTHO05D004814 3.7e-136 488.8 344 75.9
Dinv14175 Davidia involucrata HOM05D004231 ORTHO05D004814 6.3e-136 488.0 358 74.3
Cfa005374 Carpinus fangiana HOM05D004231 ORTHO05D004814 1.4e-135 486.9 343 76.4
Sed0027682 Sechium edule HOM05D004231 ORTHO05D004814 2.4e-135 486.1 339 78.5
Prupe.8G180500 Prunus persica HOM05D004231 ORTHO05D004814 3.1e-135 485.7 344 75.9
Ciclev10028700m.g Citrus clementina HOM05D004231 ORTHO05D004814 7.0e-135 484.6 333 77.2
ECA233G1094 Erigeron canadensis HOM05D004231 ORTHO05D004814 3.5e-134 482.3 329 77.8
QL05p043527 Quercus lobata HOM05D004231 ORTHO05D004814 4.5e-134 481.9 342 76.9
Hma1.2p1_0652F.1_g195880 Hydrangea macrophylla HOM05D004231 ORTHO05D004814 5.9e-134 481.5 345 74.8
FvH4_2g16830 Fragaria vesca HOM05D004231 ORTHO05D004814 7.7e-134 481.1 343 76.1
Nitab4.5_0000783g0100 Nicotiana tabacum HOM05D004231 ORTHO05D004814 1.0e-133 480.7 345 75.4
CSS0007201 Camellia sinensis var. sinensis HOM05D004231 ORTHO05D004814 2.2e-133 479.6 361 72.3
FAN15G0610 Fragaria x ananassa HOM05D004231 ORTHO05D004814 2.2e-133 479.6 342 76.0
Oeu005953.1 Olea europaea HOM05D004231 ORTHO05D004814 2.9e-133 479.2 326 79.8
Phvul.008G292300 Phaseolus vulgaris HOM05D004231 ORTHO05D004814 2.9e-133 479.2 358 74.0
RcHm_v2.0_Chr6g0280961 Rosa chinensis HOM05D004231 ORTHO05D004814 2.9e-133 479.2 343 76.7
Nn7g36283 Nelumbo nucifera HOM05D004231 ORTHO05D004814 5.0e-133 478.4 343 74.9
FAN27G2171 Fragaria x ananassa HOM05D004231 ORTHO05D004814 6.5e-133 478.0 343 75.8
Migut.N00847 Erythranthe guttata HOM05D004231 ORTHO05D004814 1.5e-132 476.9 326 78.8
FAN24G0296 Fragaria x ananassa HOM05D004231 ORTHO05D004814 1.5e-132 476.9 344 75.6
Lsat_1_v5_gn_8_121420 Lactuca sativa HOM05D004231 ORTHO05D004814 1.9e-132 476.5 356 72.8
Potri.009G168400 Populus trichocarpa HOM05D004231 ORTHO05D004814 3.2e-132 475.7 344 75.3
SalBow7G0905 Salvia bowleyana HOM05D004231 ORTHO05D004814 5.5e-132 474.9 333 78.1
SGA_v2.0_scaffold36G14389 Striga asiatica HOM05D004231 ORTHO05D004814 5.5e-132 474.9 372 71.2
TWI75G1214 Tripterygium wilfordii HOM05D004231 ORTHO05D004814 9.4e-132 474.2 365 69.3
Manes.01G017200 Manihot esculenta HOM05D004231 ORTHO05D004814 2.1e-131 473.0 343 74.9
Actinidia17992 Actinidia chinensis HOM05D004231 ORTHO05D004814 2.7e-131 472.6 362 72.7
MSTRG.25000 Avicennia marina HOM05D004231 ORTHO05D004814 1.0e-130 470.7 383 71.5
CiPaw.05G093400 Carya illinoinensis HOM05D004231 ORTHO05D004814 1.0e-130 470.7 347 76.1
Sabra04G0139300 Salix brachista HOM05D004231 ORTHO05D004814 1.0e-130 470.7 347 73.8
ECA236G1252 Erigeron canadensis HOM05D000103 ORTHO05D000049 3.0e-130 469.2 322 78.9
SGA_v2.0_scaffold172G39001 Striga asiatica HOM05D004231 ORTHO05D004814 4.0e-130 468.8 373 71.3
Potri.004G207000 Populus trichocarpa HOM05D004231 ORTHO05D004814 1.2e-129 467.2 344 74.4
HanXRQChr16g0515121 Helianthus annuus HOM05D004231 ORTHO05D004814 2.6e-129 466.1 343 73.8
Peaxi162Scf00362g00110 Petunia axillaris HOM05D004231 ORTHO05D004814 1.3e-128 463.8 331 74.9
Duzib052G0175 Durio zibethinus HOM05D004231 ORTHO05D004814 2.8e-128 462.6 343 73.8
Sopen04g003940 Solanum pennellii HOM05D004231 ORTHO05D004814 4.8e-128 461.8 327 75.2
Nn2g15251 Nelumbo nucifera HOM05D004231 ORTHO05D004814 8.2e-128 461.1 365 70.4
Solyc04g008760.3 Solanum lycopersicum HOM05D004231 ORTHO05D004814 1.1e-127 460.7 327 74.9
PGSC0003DMG400025309 Solanum tuberosum HOM05D004231 ORTHO05D004814 1.1e-127 460.7 327 74.9
CARHR293610 Cardamine hirsuta HOM05D004231 ORTHO05D004814 1.4e-127 460.3 326 75.8
Sc08g0002160 Simmondsia chinensis HOM05D004231 ORTHO05D004814 9.1e-127 457.6 361 70.1
CSS0030147 Camellia sinensis var. sinensis HOM05D004231 ORTHO05D004814 2.0e-126 456.4 348 71.6
AL3G50130 Arabidopsis lyrata HOM05D004231 ORTHO05D004814 4.5e-126 455.3 326 74.2
Thecc.02G146400 Theobroma cacao HOM05D004231 ORTHO05D004814 5.9e-126 454.9 357 69.5
AT2G17265 Arabidopsis thaliana HOM05D004231 ORTHO05D004814 1.7e-125 453.4 326 73.9
CAN.G5871.1 Capsicum annuum HOM05D004231 ORTHO05D004814 1.7e-125 453.4 327 73.1
Carub.0003s3121 Capsella rubella HOM05D004231 ORTHO05D004814 5.0e-125 451.8 326 73.9
PSO541G6356 Papaver somniferum HOM05D004231 ORTHO05D004814 6.5e-125 451.4 371 68.2
Sp3g30610 Schrenkiella parvula HOM05D004231 ORTHO05D004814 6.5e-125 451.4 326 74.2
C03p58080 Brassica napus HOM05D004231 ORTHO05D004814 1.1e-124 450.7 326 73.9
BolC3t18081H Brassica oleracea HOM05D004231 ORTHO05D004814 1.1e-124 450.7 326 73.9
RhsimUnG0022900 Rhododendron simsii HOM05D004231 ORTHO05D004814 1.1e-124 450.7 357 69.7
BcaB03g16474 Brassica carinata HOM05D004231 ORTHO05D004814 1.5e-124 450.3 326 74.2
BraA06t26345Z Brassica rapa HOM05D004231 ORTHO05D004814 1.9e-124 449.9 328 73.2
Thhalv10022738m.g Eutrema salsugineum HOM05D004231 ORTHO05D004814 1.9e-124 449.9 326 73.6
BcaC01g02941 Brassica carinata HOM05D004231 ORTHO05D004814 2.5e-124 449.5 326 73.6
Cc11_g00240 Coffea canephora HOM05D004231 ORTHO05D004814 2.5e-124 449.5 323 75.9
PSO675G1855 Papaver somniferum HOM05D004231 ORTHO05D004814 4.2e-124 448.7 371 67.9
C09p13290 Brassica napus HOM05D004231 ORTHO05D004814 1.2e-123 447.2 326 73.6
C07p06030 Brassica napus HOM05D004231 ORTHO05D004814 2.1e-123 446.4 331 72.5
Sopen01g054320 Solanum pennellii HOM05D004231 ORTHO05D004814 2.1e-123 446.4 364 67.3
PGSC0003DMG400014663 Solanum tuberosum HOM05D000109 ORTHO05D004814 2.1e-123 446.4 358 67.9
BolC9t54222H Brassica oleracea HOM05D004231 ORTHO05D004814 2.7e-123 446.0 326 73.3
BcaB07g31737 Brassica carinata HOM05D004231 ORTHO05D004814 3.6e-123 445.7 326 73.6
A06p34120 Brassica napus HOM05D004231 ORTHO05D004814 3.6e-123 445.7 326 73.0
A07p03760 Brassica napus HOM05D004231 ORTHO05D004814 4.7e-123 445.3 331 72.2
BraA07t28164Z Brassica rapa HOM05D004231 ORTHO05D004814 4.7e-123 445.3 331 72.2
unitig_0.g2083 Utricularia gibba HOM05D004231 ORTHO05D004814 4.7e-123 445.3 324 76.2
BcaB03g16478 Brassica carinata HOM05D004231 ORTHO05D004814 6.1e-123 444.9 331 72.2
BolC7t41016H Brassica oleracea HOM05D004231 ORTHO05D004814 6.1e-123 444.9 331 72.2
EL10Ac9g21537 Beta vulgaris HOM05D004231 ORTHO05D004814 8.0e-123 444.5 360 69.2
A09p11260 Brassica napus HOM05D004231 ORTHO05D004814 1.0e-122 444.1 326 72.7
BraA09t36767Z Brassica rapa HOM05D004231 ORTHO05D004814 1.0e-122 444.1 326 72.7
DCAR_006270 Daucus carota HOM05D004231 ORTHO05D004814 1.0e-122 444.1 324 74.4
BcaC04g22982 Brassica carinata HOM05D004231 ORTHO05D004814 1.8e-122 443.4 326 73.3
CDE05G1267 Ceratophyllum demersum HOM05D004231 ORTHO05D004814 2.3e-122 443.0 361 65.4
PSO063G5124 Papaver somniferum HOM05D004231 ORTHO05D004814 2.3e-122 443.0 371 67.4
Aa31LG2G14870 Aethionema arabicum HOM05D004231 ORTHO05D004814 3.0e-122 442.6 326 72.4
Lsat_1_v5_gn_4_71321 Lactuca sativa HOM05D004231 ORTHO05D004814 5.2e-122 441.8 349 63.9
AUR62013177 Chenopodium quinoa HOM05D004231 ORTHO05D004814 1.5e-121 440.3 318 76.1
CDE05G2018 Ceratophyllum demersum HOM05D004231 ORTHO05D004814 2.0e-121 439.9 343 67.9
Aqoxy1G01703 Aquilegia oxysepala HOM05D004231 ORTHO05D004814 3.4e-121 439.1 360 66.4
PSO782G1111 Papaver somniferum HOM05D004231 ORTHO05D004814 5.7e-121 438.3 371 66.8
Nitab4.5_0000129g0030 Nicotiana tabacum HOM05D004231 ORTHO05D004814 1.3e-120 437.2 347 70.9
MBI18_g17319_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 4.1e-119 432.2 350 66.6
Nitab4.5_0008730g0040 Nicotiana tabacum HOM05D004231 ORTHO05D004814 5.4e-119 431.8 350 69.4
Ah.01g009950 Amaranthus hybridus HOM05D004231 ORTHO05D004814 1.2e-118 430.6 326 73.3
Carub.0007s0500 Capsella rubella HOM05D004231 ORTHO05D004814 3.5e-118 429.1 326 72.1
Gohir.A03G170800 Gossypium hirsutum HOM05D004231 ORTHO05D004814 3.2e-116 422.5 304 74.3
Gorai.005G216700 Gossypium raimondii HOM05D004231 ORTHO05D004814 1.6e-115 420.2 304 74.0
Gohir.D02G193900 Gossypium hirsutum HOM05D004231 ORTHO05D004814 2.8e-115 419.5 304 74.0
Peaxi162Scf00329g00312 Petunia axillaris HOM05D004231 ORTHO05D004814 2.8e-115 419.5 313 73.5
ATR0177G062 Amborella trichopoda HOM05D004231 ORTHO05D004814 1.1e-111 407.5 328 65.9
SHI25239 Sapria himalayana HOM05D004231 ORTHO05D004814 9.2e-111 404.4 328 67.1
HPP92_007738 Vanilla planifolia HOM05D004231 ORTHO05D004814 1.6e-110 403.7 364 63.7
AUR62010176 Chenopodium quinoa HOM05D004231 ORTHO05D004814 1.4e-106 390.6 318 65.1
GSVIVG01023624001 Vitis vinifera HOM05D004231 ORTHO05D004814 6.4e-104 381.7 362 63.5
BcaC06g36249 Brassica carinata HOM05D004231 ORTHO05D004814 1.0e-101 374.4 315 68.3
Cpa.g.sc60.14 Carica papaya HOM05D004231 ORTHO05D004814 1.2e-99 367.5 346 63.6
Pp3c5_14900 Physcomitrium patens HOM05D004231 ORTHO05D004814 3.6e-99 365.9 326 62.6
Os02g0831800 Oryza sativa ssp. japonica HOM05D004231 ORTHO05D004814 2.3e-98 363.2 359 56.3
Mapoly0173s0009 Marchantia polymorpha HOM05D004231 ORTHO05D004814 2.6e-97 359.8 344 58.4
BcaB03g16477 Brassica carinata HOM05D004231 ORTHO05D004814 9.2e-95 351.3 259 73.7
SMO351G0181 Selaginella moellendorffii HOM05D004231 ORTHO05D004814 8.6e-93 344.7 329 59.6
THA.LOC104807405 Tarenaya hassleriana HOM05D004231 ORTHO05D004814 4.4e-89 332.4 248 74.2
CBR_g2798 Chara braunii HOM05D004385 ORTHO05D005245 1.7e-88 330.5 339 54.9
Lj9P408T30 Lonicera japonica HOM05D004231 ORTHO05D004814 5.4e-87 325.5 242 73.6
Atru.chr5.3561 Acer truncatum HOM05D004231 ORTHO05D004814 2.7e-86 323.2 203 77.8
MBI10_g41732_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 1.0e-85 321.2 297 57.2
CARHR243620 Cardamine hirsuta HOM05D004231 ORTHO05D004814 1.3e-85 320.9 245 72.2
COL.COLO4_34312 Corchorus olitorius HOM05D000109 ORTHO05D000520 1.6e-83 313.9 321 56.1
Cre02.g082250 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 6.8e-82 308.5 324 55.6
MBI15_g18193_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 4.9e-80 302.4 365 52.9
ATR0810G109 Amborella trichopoda HOM05D004231 ORTHO05D004814 5.6e-76 288.9 328 54.3
SEGI_38009 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 9.0e-66 255.0 238 57.6
TAR625G1260 Trochodendron aralioides HOM05D004231 ORTHO05D004814 1.1e-58 231.5 208 61.1
Cre02.g082200 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 7.9e-54 215.3 208 55.8
SMO231G0001 Selaginella moellendorffii HOM05D004231 ORTHO05D004814 1.8e-45 187.6 165 57.0
Dinv20762 Davidia involucrata HOM05D004231 ORTHO05D004814 5.1e-45 186.0 128 73.4
Atru.chr5.3560 Acer truncatum HOM05D004231 ORTHO05D004814 1.7e-40 171.0 108 80.6
VMungo0331G0717 Vigna mungo HOM05D004231 ORTHO05D004814 1.1e-36 158.3 102 74.5
Sabra09G0130700 Salix brachista HOM05D004231 ORTHO05D004814 7.4e-36 155.6 164 55.5
VMungo0647G1050 Vigna mungo HOM05D004231 ORTHO05D004814 4.5e-33 146.4 97 73.2
TAR625G0010 Trochodendron aralioides HOM05D004231 ORTHO05D004814 5.0e-32 142.9 90 76.7
arahy.Tifrunner.gnm1.ann1.H05BEB Arachis hypogaea HOM05D004231 ORTHO05D004814 1.6e-30 137.9 95 71.6
Actinidia26328 Actinidia chinensis HOM05D004231 ORTHO05D004814 4.8e-27 126.3 128 54.7
BcaB08g34718 Brassica carinata HOM05D004231 ORTHO05D004814 7.7e-25 119.0 78 75.6
unitig_747.g21541 Utricularia gibba HOM05D006537 ORTHO05D008186 4.2e-23 113.2 285 32.6
QL06p003747 Quercus lobata HOM05D003236 ORTHO05D003620 2.1e-22 110.9 112 51.8
QL03p013131 Quercus lobata HOM05D004231 ORTHO05D004814 2.0e-20 104.4 81 63.0
QL08p042586 Quercus lobata HOM05D004231 ORTHO05D004814 2.8e-19 100.5 88 58.0
SEGI_19463 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 2.8e-19 100.5 107 50.5
BcaC06g34170 Brassica carinata HOM05D004231 ORTHO05D004814 4.5e-17 93.2 65 69.2
BcaB08g34717 Brassica carinata HOM05D004231 ORTHO05D004814 1.6e-14 84.7 58 67.2
MCO14G367 Micromonas commoda HOM05D004231 ORTHO05D004814 2.1e-14 84.3 274 32.5
PRCOL_00006973 Prasinoderma coloniale HOM05D004231 ORTHO05D004814 3.0e-13 80.5 140 41.4
Lsat_1_v5_gn_2_1161 Lactuca sativa HOM05D004231 ORTHO05D004814 5.3e-10 69.7 56 60.7
TAR625G0853 Trochodendron aralioides HOM05D000369 ORTHO05D000253 7.0e-10 69.3 175 34.9
FAN07G1153 Fragaria x ananassa HOM05D004231 ORTHO05D004814 3.5e-09 67.0 43 72.1
FAN05G5401 Fragaria x ananassa HOM05D004231 ORTHO05D004814 4.5e-09 66.6 43 69.8
AT4G35295 Arabidopsis thaliana HOM05D004231 ORTHO05D004814 7.7e-09 65.9 63 55.6
FAN15G0284 Fragaria x ananassa HOM05D004231 ORTHO05D004814 2.2e-08 64.3 43 69.8
FAN23G0549 Fragaria x ananassa HOM05D004231 ORTHO05D004814 2.9e-08 63.9 79 50.6
FAN23G1162 Fragaria x ananassa HOM05D004231 ORTHO05D004814 2.9e-08 63.9 79 50.6
Cre02.g082150 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 6.5e-08 62.8 47 61.7
FvH4_3g29830 Fragaria vesca HOM05D004126 ORTHO05D004818 8.5e-08 62.4 42 71.4
FAN05G3570 Fragaria x ananassa HOM05D004231 ORTHO05D004814 8.5e-08 62.4 43 69.8
SEGI_37911 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 1.9e-07 61.2 49 55.1
FAN25G3338 Fragaria x ananassa HOM05D004231 ORTHO05D004814 5.5e-07 59.7 43 62.8
FAN04G2646 Fragaria x ananassa HOM05D004231 ORTHO05D004814 3.6e-06 57.0 43 62.8
BolC7t43738H Brassica oleracea HOM05D004231 ORTHO05D004814 6.1e-06 56.2 66 45.5


User provided reference genes

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