Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G18628 Trifolium pratense HOM05D005114 ORTHO05D006301 6.0e-67 257.7 161 100.0
Ca_06504_v3 Cicer arietinum L. HOM05D005114 ORTHO05D006301 5.5e-28 128.3 160 50.0
Medtr5g099250 Medicago truncatula HOM05D005114 ORTHO05D006301 9.3e-28 127.5 161 55.3
Glyma.02G311900 Glycine max HOM05D005114 ORTHO05D006301 8.2e-24 114.4 93 60.2
Phvul.008G292700 Phaseolus vulgaris HOM05D005114 ORTHO05D006301 9.1e-23 110.9 101 59.4
Haze_01976 Corylus avellana HOM05D005114 ORTHO05D006301 1.5e-22 110.2 69 68.1
Cfa005386 Carpinus fangiana HOM05D005114 ORTHO05D006301 5.9e-22 108.2 69 68.1
RcHm_v2.0_Chr6g0281051 Rosa chinensis HOM05D005114 ORTHO05D006301 5.9e-22 108.2 91 56.0
CiPaw.05G093800 Carya illinoinensis HOM05D005114 ORTHO05D006301 1.0e-21 107.5 91 58.2
Manes.15G113200 Manihot esculenta HOM05D005114 ORTHO05D006301 1.7e-21 106.7 91 58.2
Eucgr.I01537 Eucalyptus grandis HOM05D005114 ORTHO05D006301 2.2e-21 106.3 93 54.8
Cpa.g.sc232.10 Carica papaya HOM05D005114 ORTHO05D006301 5.0e-21 105.1 91 57.1
MELO3C013487.2 Cucumis melo HOM05D005114 ORTHO05D006301 1.1e-20 104.0 86 57.0
Gohir.A03G170500 Gossypium hirsutum HOM05D005114 ORTHO05D006301 1.1e-20 104.0 91 54.9
Gorai.005G216400 Gossypium raimondii HOM05D005114 ORTHO05D006301 1.1e-20 104.0 91 54.9
FvH4_2g16910 Fragaria vesca HOM05D005114 ORTHO05D006301 1.9e-20 103.2 93 54.8
FAN24G2001 Fragaria x ananassa HOM05D008916 ORTHO05D029537 1.9e-20 103.2 93 54.8
FAN27G0013 Fragaria x ananassa HOM05D005114 ORTHO05D006301 1.9e-20 103.2 93 54.8
VMungo0647G0598 Vigna mungo HOM05D005114 ORTHO05D006301 1.9e-20 103.2 87 62.1
COL.COLO4_34318 Corchorus olitorius HOM05D005114 ORTHO05D006301 3.2e-20 102.4 91 54.9
CsaV3_6G010060 Cucumis sativus L. HOM05D005114 ORTHO05D006301 3.2e-20 102.4 86 57.0
Sed0025941 Sechium edule HOM05D005114 ORTHO05D006301 3.2e-20 102.4 72 62.5
LjContig00081g0003123 Lotus japonicus HOM05D005114 ORTHO05D006301 4.2e-20 102.1 98 55.1
MD11G1242200 Malus domestica HOM05D005114 ORTHO05D006301 4.2e-20 102.1 84 59.5
Prupe.8G180900 Prunus persica HOM05D007297 ORTHO05D009352 4.2e-20 102.1 85 60.0
QL11p056532 Quercus lobata HOM05D005114 ORTHO05D006301 4.2e-20 102.1 91 57.1
Sabra04G0139700 Salix brachista HOM05D005114 ORTHO05D006301 4.2e-20 102.1 90 54.4
Thecc.02G147000 Theobroma cacao HOM05D005114 ORTHO05D006301 4.2e-20 102.1 91 53.8
Gohir.D12G013600 Gossypium hirsutum HOM05D005114 ORTHO05D006301 5.5e-20 101.7 96 53.1
Gorai.008G013600 Gossypium raimondii HOM05D005114 ORTHO05D006301 5.5e-20 101.7 96 53.1
MD05G1140900 Malus domestica HOM05D005114 ORTHO05D006301 5.5e-20 101.7 84 59.5
Duzib248G1587 Durio zibethinus HOM05D005114 ORTHO05D006301 7.2e-20 101.3 91 53.8
Lsat_1_v5_gn_4_127800 Lactuca sativa HOM05D005114 ORTHO05D006301 7.2e-20 101.3 79 60.8
PGR142G2291 Punica granatum HOM05D005114 ORTHO05D006301 9.4e-20 100.9 96 51.0
Gohir.D02G193600 Gossypium hirsutum HOM05D005114 ORTHO05D006301 1.2e-19 100.5 90 54.4
GSVIVG01023865001 Vitis vinifera HOM05D007297 ORTHO05D009352 1.2e-19 100.5 87 56.3
ClCG02G010460 Citrullus lanatus HOM05D005114 ORTHO05D006301 1.6e-19 100.1 68 63.2
TAR628G1615 Trochodendron aralioides HOM05D005114 ORTHO05D006301 2.1e-19 99.8 91 53.8
Lj5P171T50 Lonicera japonica HOM05D005114 ORTHO05D006301 1.0e-18 97.4 69 62.3
PGR042G3856 Punica granatum HOM05D005114 ORTHO05D006301 1.4e-18 97.1 90 51.1
TWI31G1388 Tripterygium wilfordii HOM05D005114 ORTHO05D006301 1.8e-18 96.7 84 54.8
FAN15G0896 Fragaria x ananassa HOM05D005114 ORTHO05D006301 2.3e-18 96.3 93 52.7
Glyma.14G000700 Glycine max HOM05D005114 ORTHO05D006301 2.3e-18 96.3 91 58.2
Potri.009G168800 Populus trichocarpa HOM05D005114 ORTHO05D006301 2.3e-18 96.3 89 51.7
Duzib132G0223 Durio zibethinus HOM05D005114 ORTHO05D006301 3.9e-18 95.5 76 57.9
Dinv41866 Davidia involucrata HOM05D005114 ORTHO05D006301 5.1e-18 95.1 67 62.7
Ciclev10029408m.g Citrus clementina HOM05D005114 ORTHO05D006301 6.7e-18 94.7 96 50.0
Lsat_1_v5_gn_8_120760 Lactuca sativa HOM05D005114 ORTHO05D006301 8.8e-18 94.4 79 59.5
DCAR_006992 Daucus carota HOM05D005114 ORTHO05D006301 1.1e-17 94.0 71 59.2
Solyc01g112260.4 Solanum lycopersicum HOM05D005114 ORTHO05D006301 1.1e-17 94.0 94 50.0
HanXRQChr15g0479801 Helianthus annuus HOM05D005114 ORTHO05D006301 1.5e-17 93.6 99 48.5
Oeu025012.1 Olea europaea HOM05D005114 ORTHO05D006301 1.5e-17 93.6 91 54.9
Rhsim05G0044800 Rhododendron simsii HOM05D005114 ORTHO05D006301 1.5e-17 93.6 96 47.9
Sabra09G0131100 Salix brachista HOM05D005114 ORTHO05D006301 2.6e-17 92.8 89 51.7
TAR376G1108 Trochodendron aralioides HOM05D005114 ORTHO05D006301 2.6e-17 92.8 89 52.8
Sopen01g054350 Solanum pennellii HOM05D005114 ORTHO05D006301 3.3e-17 92.4 94 48.9
TWI75G1159 Tripterygium wilfordii HOM05D005114 ORTHO05D006301 3.3e-17 92.4 78 59.0
Eucgr.H04995 Eucalyptus grandis HOM05D005114 ORTHO05D006301 4.4e-17 92.0 99 49.5
ClCG02G003320 Citrullus lanatus HOM05D005114 ORTHO05D006301 7.4e-17 91.3 91 52.7
Duzib052G0751 Durio zibethinus HOM05D005114 ORTHO05D006301 7.4e-17 91.3 92 48.9
Oeu061898.1 Olea europaea HOM05D005114 ORTHO05D006301 7.4e-17 91.3 91 52.7
Migut.N01364 Erythranthe guttata HOM05D005114 ORTHO05D006301 1.3e-16 90.5 96 52.1
TAR381G0701 Trochodendron aralioides HOM05D005114 ORTHO05D006301 1.7e-16 90.1 96 52.1
Aqoxy6G01552 Aquilegia oxysepala HOM05D005114 ORTHO05D006301 2.2e-16 89.7 148 36.5
Lsat_1_v5_gn_3_48420 Lactuca sativa HOM05D005114 ORTHO05D006301 2.2e-16 89.7 99 45.5
THA.LOC104819696 Tarenaya hassleriana HOM05D005114 ORTHO05D006301 2.2e-16 89.7 66 59.1
HanXRQChr16g0528291 Helianthus annuus HOM05D005114 ORTHO05D006301 2.8e-16 89.4 99 49.5
Potri.004G207500 Populus trichocarpa HOM05D005114 ORTHO05D006301 2.8e-16 89.4 90 51.1
MSTRG.27609 Avicennia marina HOM05D005114 ORTHO05D006301 3.7e-16 89.0 83 54.2
Cc09_g10870 Coffea canephora HOM05D007297 ORTHO05D009352 8.2e-16 87.8 67 53.7
Nn6g31654 Nelumbo nucifera HOM05D005114 ORTHO05D006301 1.4e-15 87.0 154 35.1
Sc08g0002110 Simmondsia chinensis HOM05D005114 ORTHO05D006301 1.4e-15 87.0 69 52.2
Nitab4.5_0000783g0020 Nicotiana tabacum HOM05D005114 ORTHO05D006301 1.8e-15 86.7 95 45.3
SGA_v2.0_scaffold98G29308 Striga asiatica HOM05D005114 ORTHO05D006301 5.3e-15 85.1 89 43.8
CANSAT25G0809 Cannabis sativa HOM05D005114 ORTHO05D006301 1.2e-14 84.0 68 58.8
Lalb_Chr10g0107691 Lupinus albus HOM05D005114 ORTHO05D006301 1.2e-14 84.0 92 48.9
unitig_0.g2368 Utricularia gibba HOM05D005114 ORTHO05D006301 1.2e-14 84.0 70 51.4
Ah.01g009940 Amaranthus hybridus HOM05D005114 ORTHO05D006301 1.5e-14 83.6 83 47.0
AUR62013183 Chenopodium quinoa HOM05D005114 ORTHO05D006301 1.5e-14 83.6 69 50.7
Atru.chr5.3568 Acer truncatum HOM05D005114 ORTHO05D006301 3.4e-14 82.4 93 50.5
PSO541G2758 Papaver somniferum HOM05D005114 ORTHO05D006301 3.4e-14 82.4 71 50.7
PSO675G3082 Papaver somniferum HOM05D005114 ORTHO05D006301 3.4e-14 82.4 71 50.7
PSO210G3276 Papaver somniferum HOM05D005114 ORTHO05D006301 4.5e-14 82.0 78 47.4
Sed0004058 Sechium edule HOM05D005114 ORTHO05D006301 4.5e-14 82.0 92 50.0
Ah.01g017650 Amaranthus hybridus HOM05D005114 ORTHO05D006301 5.9e-14 81.6 83 45.8
EL10Ac9g21545 Beta vulgaris HOM05D005114 ORTHO05D006301 5.9e-14 81.6 83 45.8
CSS0034975 Camellia sinensis var. sinensis HOM05D005114 ORTHO05D006301 5.9e-14 81.6 94 45.7
PSO761G0527 Papaver somniferum HOM05D005114 ORTHO05D006301 5.9e-14 81.6 78 47.4
CDE06G2378 Ceratophyllum demersum HOM05D005114 ORTHO05D006301 7.7e-14 81.3 60 50.0
Sp7g33120 Schrenkiella parvula HOM05D005114 ORTHO05D006301 1.3e-13 80.5 80 46.2
CDE07G1352 Ceratophyllum demersum HOM05D005114 ORTHO05D006301 1.7e-13 80.1 88 42.0
SalBow5G2991 Salvia bowleyana HOM05D005114 ORTHO05D006301 1.7e-13 80.1 83 47.0
SalBow5G4655 Salvia bowleyana HOM05D005114 ORTHO05D006301 1.7e-13 80.1 83 47.0
CARHR243650 Cardamine hirsuta HOM05D005114 ORTHO05D006301 2.2e-13 79.7 80 46.2
unitig_26.g9983 Utricularia gibba HOM05D005114 ORTHO05D006301 2.2e-13 79.7 86 50.0
Carub.0007s0497 Capsella rubella HOM05D005114 ORTHO05D006301 2.9e-13 79.3 80 46.2
Aa31LG2G14950 Aethionema arabicum HOM05D005114 ORTHO05D006301 8.5e-13 77.8 69 52.2
Thhalv10026488m.g Eutrema salsugineum HOM05D005114 ORTHO05D006301 1.1e-12 77.4 84 46.4
AL7G15830 Arabidopsis lyrata HOM05D005114 ORTHO05D006301 1.4e-12 77.0 80 45.0
BraA01t00308Z Brassica rapa HOM05D005114 ORTHO05D006301 1.4e-12 77.0 59 52.5
Zm00001eb252690 Zea mays HOM05D005114 ORTHO05D006301 1.4e-12 77.0 94 38.3
AT4G35320 Arabidopsis thaliana HOM05D005114 ORTHO05D006301 3.2e-12 75.9 80 45.0
BcaNung00605 Brassica carinata HOM05D005114 ORTHO05D006301 4.2e-12 75.5 59 50.8
C01p03580 Brassica napus HOM05D005114 ORTHO05D006301 4.2e-12 75.5 59 50.8
BolC1t00348H Brassica oleracea HOM05D005114 ORTHO05D006301 4.2e-12 75.5 59 50.8
MELO3C015705.2 Cucumis melo HOM05D005114 ORTHO05D006301 4.2e-12 75.5 97 46.4
unitig_749.g13979 Utricularia gibba HOM05D005114 ORTHO05D006301 4.2e-12 75.5 86 47.7
A01p03230 Brassica napus HOM05D005114 ORTHO05D006301 5.5e-12 75.1 59 50.8
Os02g0715300 Oryza sativa ssp. japonica HOM05D005114 ORTHO05D006301 7.2e-12 74.7 90 42.2
CAN.G1645.5 Capsicum annuum HOM05D005114 ORTHO05D006301 1.6e-11 73.6 56 55.4
THA.LOC104807409 Tarenaya hassleriana HOM05D005114 ORTHO05D006301 3.6e-11 72.4 73 52.1
MBI04_g33967_MAGBIO Magnolia biondii HOM05D005114 ORTHO05D006301 2.3e-10 69.7 91 42.9
Os08g0511400 Oryza sativa ssp. japonica HOM05D005114 ORTHO05D006301 2.3e-10 69.7 60 43.3
A07p03740 Brassica napus HOM05D005114 ORTHO05D006301 3.9e-10 68.9 83 44.6
CiPaw.06G114800 Carya illinoinensis HOM05D005114 ORTHO05D006301 3.9e-10 68.9 60 53.3
BraA07t28162Z Brassica rapa HOM05D005114 ORTHO05D006301 5.2e-10 68.6 83 44.6
CSS0049408 Camellia sinensis var. sinensis HOM05D005114 ORTHO05D006301 8.8e-10 67.8 58 55.2
BcaC06g36254 Brassica carinata HOM05D005114 ORTHO05D006301 1.1e-09 67.4 83 43.4
C07p05980 Brassica napus HOM05D005114 ORTHO05D006301 1.1e-09 67.4 83 43.4
BolC7t41007H Brassica oleracea HOM05D005114 ORTHO05D006301 1.1e-09 67.4 83 43.4
CsaV3_7G002020 Cucumis sativus L. HOM05D005114 ORTHO05D006301 1.5e-09 67.0 91 45.1
Lju1609C0T0 Lonicera japonica HOM05D005114 ORTHO05D006301 3.3e-09 65.9 44 59.1
HPP92_018957 Vanilla planifolia HOM05D005114 ORTHO05D006301 4.4e-09 65.5 95 38.9
ATR0605G119 Amborella trichopoda HOM05D005114 ORTHO05D006301 1.3e-08 63.9 86 45.3
BcaB03g16485 Brassica carinata HOM05D005114 ORTHO05D006301 2.2e-08 63.2 82 42.7
Gohir.A12G012850 Gossypium hirsutum HOM05D005114 ORTHO05D006301 2.2e-08 63.2 50 58.0
AT2G17300 Arabidopsis thaliana HOM05D005114 ORTHO05D006301 4.8e-08 62.0 73 47.9
Sp3g30650 Schrenkiella parvula HOM05D005114 ORTHO05D006301 4.8e-08 62.0 70 42.9
Carub.0003s3126 Capsella rubella HOM05D005114 ORTHO05D006301 6.3e-08 61.6 73 43.8
HanXRQChr14g0449881 Helianthus annuus HOM05D005114 ORTHO05D006301 8.2e-08 61.2 79 45.6
Zm00001eb188970 Zea mays HOM05D005114 ORTHO05D006301 1.1e-07 60.8 69 46.4
AL3G50180 Arabidopsis lyrata HOM05D005114 ORTHO05D006301 2.6e-06 56.2 72 47.2
Dinv11287 Davidia involucrata HOM05D005114 ORTHO05D006301 3.5e-06 55.8 43 53.5
Dinv13785 Davidia involucrata HOM05D005114 ORTHO05D006301 3.5e-06 55.8 43 53.5


User provided reference genes

Program Settings