Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G18550 Trifolium pratense HOM05D003551 ORTHO05D004869 0.0e+00 1102.8 578 100.0
Lj1g0001310 Lotus japonicus HOM05D003551 ORTHO05D004869 1.1e-102 378.3 542 43.9
Ca_25128_v3 Cicer arietinum L. HOM05D003551 ORTHO05D004869 3.2e-102 376.7 540 44.6
Phvul.001G256500 Phaseolus vulgaris HOM05D003551 ORTHO05D004869 3.2e-102 376.7 554 43.9
Glyma.11G244500 Glycine max HOM05D003551 ORTHO05D004869 6.6e-100 369.0 537 43.6
Lalb_Chr23g0277731 Lupinus albus HOM05D003551 ORTHO05D004869 8.7e-100 368.6 547 43.9
Medtr3g086350 Medicago truncatula HOM05D003551 ORTHO05D004869 1.5e-99 367.9 525 44.4
Medtr4g006000 Medicago truncatula HOM05D003551 ORTHO05D004869 4.3e-99 366.3 522 46.2
LjContig00312_ERROPOS870357g0004032 Lotus japonicus HOM05D003551 ORTHO05D004869 2.8e-98 363.6 550 43.3
VMungo0540G0742 Vigna mungo HOM05D003551 ORTHO05D004869 1.4e-97 361.3 529 43.3
Psat2g160640 Pisum sativum HOM05D003551 ORTHO05D004869 1.8e-97 360.9 533 43.2
arahy.Tifrunner.gnm1.ann1.A5BQBU Arachis hypogaea HOM05D003551 ORTHO05D004869 3.1e-97 360.1 567 42.7
Hma1.2p1_0079F.1_g041260 Hydrangea macrophylla HOM05D003551 ORTHO05D004869 9.0e-97 358.6 535 40.9
TPR.G5678 Trifolium pratense HOM05D003551 ORTHO05D004869 1.2e-96 358.2 540 42.2
COL.COLO4_23531 Corchorus olitorius HOM05D003551 ORTHO05D004869 2.0e-96 357.5 547 41.3
arahy.Tifrunner.gnm1.ann1.MWLQ6N Arachis hypogaea HOM05D003551 ORTHO05D004869 2.6e-96 357.1 548 42.3
Manes.12G019500 Manihot esculenta HOM05D003551 ORTHO05D004869 3.4e-96 356.7 525 40.6
Eucgr.H02450 Eucalyptus grandis HOM05D003551 ORTHO05D004869 9.9e-96 355.1 553 40.1
Thecc.02G267000 Theobroma cacao HOM05D003551 ORTHO05D004869 9.9e-96 355.1 543 41.4
Duzib268G0822 Durio zibethinus HOM05D003551 ORTHO05D004869 2.9e-95 353.6 523 42.3
QL05p021165 Quercus lobata HOM05D003551 ORTHO05D004869 4.9e-95 352.8 556 41.9
HanXRQChr08g0208471 Helianthus annuus HOM05D003551 ORTHO05D004869 6.4e-95 352.4 530 40.6
PGSC0003DMG400004723 Solanum tuberosum HOM05D003551 ORTHO05D004869 1.1e-94 351.7 540 40.0
Gohir.A12G268000 Gossypium hirsutum HOM05D003551 ORTHO05D004869 4.2e-94 349.7 540 41.7
Nitab4.5_0001290g0150 Nicotiana tabacum HOM05D003551 ORTHO05D004869 4.2e-94 349.7 532 40.4
Gorai.008G288600 Gossypium raimondii HOM05D003551 ORTHO05D004869 9.3e-94 348.6 518 42.1
Nitab4.5_0004725g0020 Nicotiana tabacum HOM05D003551 ORTHO05D004869 9.3e-94 348.6 522 39.7
ECA240G1955 Erigeron canadensis HOM05D003551 ORTHO05D004869 1.6e-93 347.8 534 40.3
Rhsim12G0038300 Rhododendron simsii HOM05D003551 ORTHO05D004869 2.1e-93 347.4 512 41.2
Hund25033 Selenicereus undatus HOM05D003551 ORTHO05D004869 2.1e-93 347.4 527 41.4
Gohir.D12G268400 Gossypium hirsutum HOM05D003551 ORTHO05D004869 7.8e-93 345.5 518 42.1
Prupe.1G240500 Prunus persica HOM05D003551 ORTHO05D004869 1.0e-92 345.1 542 40.2
PSO017G3678 Papaver somniferum HOM05D003551 ORTHO05D004869 3.9e-92 343.2 531 39.5
Ciclev10030726m.g Citrus clementina HOM05D003551 ORTHO05D004869 8.7e-92 342.0 528 41.7
Aqoxy3G00657 Aquilegia oxysepala HOM05D003551 ORTHO05D004869 1.9e-91 340.9 573 39.8
Aqoxy3G01365 Aquilegia oxysepala HOM05D003551 ORTHO05D004869 2.5e-91 340.5 573 39.8
PGR119G0237 Punica granatum HOM05D003551 ORTHO05D004869 2.5e-91 340.5 520 41.2
Sc04g0005980 Simmondsia chinensis HOM05D003551 ORTHO05D004869 3.3e-91 340.1 512 41.2
PSO478G3924 Papaver somniferum HOM05D003551 ORTHO05D004869 7.3e-91 339.0 549 38.4
Potri.008G182900 Populus trichocarpa HOM05D003551 ORTHO05D004869 9.6e-91 338.6 509 41.1
Haze_12293 Corylus avellana HOM05D003551 ORTHO05D004869 2.1e-90 337.4 522 40.4
Dinv14754 Davidia involucrata HOM05D003551 ORTHO05D004869 2.1e-90 337.4 560 39.6
MD16G1105900 Malus domestica HOM05D003551 ORTHO05D004869 2.8e-90 337.0 522 38.5
Sabra08G0139300 Salix brachista HOM05D003551 ORTHO05D004869 2.8e-90 337.0 532 39.7
TWI36G0896 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 4.8e-90 336.3 522 40.6
CSS0025446 Camellia sinensis var. sinensis HOM05D003551 ORTHO05D004869 6.2e-90 335.9 519 40.3
CiPaw.06G064600 Carya illinoinensis HOM05D003551 ORTHO05D004869 6.2e-90 335.9 516 40.1
ClCG03G002050 Citrullus lanatus HOM05D003551 ORTHO05D004869 6.2e-90 335.9 530 41.3
Sopen12g034510 Solanum pennellii HOM05D003551 ORTHO05D004869 8.1e-90 335.5 540 39.3
MSTRG.7955 Avicennia marina HOM05D003551 ORTHO05D004869 1.8e-89 334.3 550 39.5
Solyc12g099890.2 Solanum lycopersicum HOM05D003551 ORTHO05D004869 1.8e-89 334.3 540 39.3
SGA_v2.0_scaffold92G28200 Striga asiatica HOM05D003551 ORTHO05D004869 2.4e-89 334.0 561 39.0
Cfa009260 Carpinus fangiana HOM05D003551 ORTHO05D004869 3.1e-89 333.6 552 38.4
SalBow2G2049 Salvia bowleyana HOM05D003551 ORTHO05D004869 3.1e-89 333.6 520 39.6
CAN.G484.3 Capsicum annuum HOM05D003551 ORTHO05D004869 9.0e-89 332.0 524 39.9
MELO3C022674.2 Cucumis melo HOM05D003551 ORTHO05D004869 1.2e-88 331.6 510 41.6
Lsat_1_v5_gn_8_153700 Lactuca sativa HOM05D003551 ORTHO05D004869 2.0e-88 330.9 533 39.8
arahy.Tifrunner.gnm1.ann1.006XS9 Arachis hypogaea HOM05D003551 ORTHO05D004869 3.4e-88 330.1 545 40.9
Cpa.g.sc33.80 Carica papaya HOM05D003551 ORTHO05D004869 3.4e-88 330.1 527 39.5
FvH4_4g25230 Fragaria vesca HOM05D003551 ORTHO05D004869 3.4e-88 330.1 521 39.7
FAN12G2593 Fragaria x ananassa HOM05D003551 ORTHO05D004869 3.4e-88 330.1 521 39.7
THA.LOC104809236 Tarenaya hassleriana HOM05D003551 ORTHO05D004869 3.4e-88 330.1 528 39.2
arahy.Tifrunner.gnm1.ann1.X9TT4V Arachis hypogaea HOM05D003551 ORTHO05D004869 7.6e-88 328.9 545 40.4
arahy.Tifrunner.gnm1.ann1.5TZZ24 Arachis hypogaea HOM05D003551 ORTHO05D004869 9.9e-88 328.6 545 40.4
Migut.K00634 Erythranthe guttata HOM05D003551 ORTHO05D004869 9.9e-88 328.6 548 37.8
FAN22G1040 Fragaria x ananassa HOM05D003551 ORTHO05D004869 1.3e-87 328.2 554 38.8
CsaV3_1G012700 Cucumis sativus L. HOM05D003551 ORTHO05D004869 3.8e-87 326.6 530 40.2
Zm00001eb069620 Zea mays HOM05D003551 ORTHO05D004869 4.9e-87 326.2 537 38.0
Oeu028968.1 Olea europaea HOM05D003551 ORTHO05D004869 1.4e-86 324.7 543 40.5
RcHm_v2.0_Chr4g0432421 Rosa chinensis HOM05D003551 ORTHO05D004869 1.4e-86 324.7 572 38.1
CANSAT01G3182 Cannabis sativa HOM05D003551 ORTHO05D004869 1.9e-86 324.3 545 38.9
Sed0023493 Sechium edule HOM05D003551 ORTHO05D004869 2.7e-85 320.5 512 39.8
Lsat_1_v5_gn_8_153780 Lactuca sativa HOM05D003551 ORTHO05D004869 4.6e-85 319.7 542 38.6
GSVIVG01000585001 Vitis vinifera HOM05D003551 ORTHO05D004869 6.0e-85 319.3 488 41.0
TWI75G1217 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 1.0e-84 318.5 518 38.6
MELO3C026845.2 Cucumis melo HOM05D003551 ORTHO05D004869 3.0e-84 317.0 538 39.8
Peaxi162Scf00062g00716 Petunia axillaris HOM05D003551 ORTHO05D004869 3.0e-84 317.0 540 38.3
Oeu014152.4 Olea europaea HOM05D003551 ORTHO05D004869 6.7e-84 315.8 569 38.8
EL10Ac6g14297 Beta vulgaris HOM05D003551 ORTHO05D004869 2.5e-83 313.9 570 37.2
PSO017G4772 Papaver somniferum HOM05D003551 ORTHO05D004869 4.3e-83 313.2 533 37.1
PSO063G2135 Papaver somniferum HOM05D003551 ORTHO05D004869 1.6e-82 311.2 536 37.3
DCAR_007035 Daucus carota HOM05D003551 ORTHO05D004869 1.4e-81 308.1 568 35.2
AUR62014112 Chenopodium quinoa HOM05D003551 ORTHO05D004869 4.0e-81 306.6 541 37.7
Lj6C816T3 Lonicera japonica HOM05D003551 ORTHO05D004869 9.0e-81 305.4 517 37.9
FAN17G0358 Fragaria x ananassa HOM05D003551 ORTHO05D004869 9.9e-80 302.0 581 36.0
Medtr4g005970 Medicago truncatula HOM05D003551 ORTHO05D004869 4.9e-79 299.7 446 45.1
Cc11_g16150 Coffea canephora HOM05D003551 ORTHO05D004869 1.9e-78 297.7 519 38.7
Aqoxy6G03052 Aquilegia oxysepala HOM05D003551 ORTHO05D004869 3.5e-77 293.5 544 36.9
TWI34G1512 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 7.9e-77 292.4 549 36.4
SalBow5G3625 Salvia bowleyana HOM05D003551 ORTHO05D004869 3.0e-76 290.4 517 36.9
Aa31LG1G1640 Aethionema arabicum HOM05D003551 ORTHO05D004869 9.0e-73 278.9 562 35.2
HPP92_011125 Vanilla planifolia HOM05D003551 ORTHO05D004869 2.0e-72 277.7 530 36.2
ATR0824G183 Amborella trichopoda HOM05D003551 ORTHO05D004869 5.8e-72 276.2 437 38.4
BolC8t52212H Brassica oleracea HOM05D003551 ORTHO05D004869 6.5e-71 272.7 532 34.6
C08p46730 Brassica napus HOM05D003551 ORTHO05D004869 8.4e-71 272.3 532 34.6
AL1G24840 Arabidopsis lyrata HOM05D003551 ORTHO05D004869 1.4e-70 271.6 526 36.1
A09p63240 Brassica napus HOM05D003551 ORTHO05D004869 1.9e-70 271.2 528 34.7
SalBow5G3177 Salvia bowleyana HOM05D003551 ORTHO05D004869 4.2e-70 270.0 553 35.3
Nn4g22519 Nelumbo nucifera HOM05D003551 ORTHO05D004869 5.5e-70 269.6 344 47.4
AT1G13160 Arabidopsis thaliana HOM05D003551 ORTHO05D004869 9.3e-70 268.9 535 35.9
BraA09t41676Z Brassica rapa HOM05D003551 ORTHO05D004869 2.1e-69 267.7 528 34.5
Thhalv10006828m.g Eutrema salsugineum HOM05D003551 ORTHO05D004869 2.7e-69 267.3 519 35.1
vmacro01109 Vaccinium macrocarpon HOM05D003551 ORTHO05D004869 7.9e-69 265.8 517 35.6
Carub.0003s0103 Capsella rubella HOM05D003551 ORTHO05D004869 1.3e-68 265.0 527 34.5
Thhalv10005577m.g Eutrema salsugineum HOM05D003551 ORTHO05D004869 4.3e-67 260.0 536 34.9
Carub.0001s1289 Capsella rubella HOM05D003551 ORTHO05D004869 6.3e-66 256.1 538 34.0
CARHR068650 Cardamine hirsuta HOM05D003551 ORTHO05D004869 2.4e-65 254.2 530 34.0
Mapoly0084s0017 Marchantia polymorpha HOM05D003551 ORTHO05D004869 5.3e-65 253.1 525 33.5
Pp3c21_560 Physcomitrium patens HOM05D003551 ORTHO05D004869 1.2e-64 251.9 500 34.6
Sp1g11680 Schrenkiella parvula HOM05D003551 ORTHO05D004869 2.6e-64 250.8 571 32.7
Actinidia01370 Actinidia chinensis HOM05D003551 ORTHO05D004869 6.5e-63 246.1 457 37.2
AUR62002805 Chenopodium quinoa HOM05D003551 ORTHO05D004869 8.5e-63 245.7 510 34.9
AagrBONN_evm.TU.Sc2ySwM_344.4679 Anthoceros agrestis HOM05D003551 ORTHO05D004869 2.7e-61 240.7 450 36.0
AL7G20520 Arabidopsis lyrata HOM05D003551 ORTHO05D004869 6.1e-61 239.6 567 31.6
unitig_22.g6420 Utricularia gibba HOM05D003551 ORTHO05D004869 5.7e-59 233.0 346 43.9
AT4G31520 Arabidopsis thaliana HOM05D003551 ORTHO05D004869 2.8e-58 230.7 455 35.8
QL04p087069 Quercus lobata HOM05D003551 ORTHO05D004869 6.5e-55 219.5 311 43.4
CBR_g23824 Chara braunii HOM05D003551 ORTHO05D004869 1.4e-54 218.4 504 31.0
Pp3c21_561 Physcomitrium patens HOM05D003551 ORTHO05D004869 1.8e-52 211.5 395 35.7
Os04g0630000 Oryza sativa ssp. japonica HOM05D003551 ORTHO05D004869 7.4e-51 206.1 269 46.5
SEGI_37161 Sequoiadendron giganteum HOM05D003551 ORTHO05D004869 3.7e-50 203.8 245 46.9
CDE02G2789 Ceratophyllum demersum HOM05D003551 ORTHO05D004869 3.4e-48 197.2 539 30.6
MCO05G293 Micromonas commoda HOM05D003551 ORTHO05D004869 4.2e-46 190.3 486 29.8
SMO197G0095 Selaginella moellendorffii HOM05D003551 ORTHO05D004869 9.4e-46 189.1 455 32.1
PRCOL_00005223 Prasinoderma coloniale HOM05D003551 ORTHO05D004869 3.3e-43 180.6 461 30.2
AUR62020542 Chenopodium quinoa HOM05D003551 ORTHO05D004869 7.4e-43 179.5 517 29.8
TAR374G0642 Trochodendron aralioides HOM05D003551 ORTHO05D004869 6.3e-42 176.4 166 56.0
Cre06.g277050 Chlamydomonas reinhardtii HOM05D003551 ORTHO05D004869 1.6e-40 171.8 511 26.8
CARHR013530 Cardamine hirsuta HOM05D003551 ORTHO05D004869 8.5e-39 166.0 222 43.7
Atru.chr11.1974 Acer truncatum HOM05D003551 ORTHO05D004869 2.5e-38 164.5 345 34.5
FAN07G2018 Fragaria x ananassa HOM05D003551 ORTHO05D004869 1.4e-36 158.7 262 37.0
AUR62015661 Chenopodium quinoa HOM05D003551 ORTHO05D004869 1.2e-35 155.6 521 29.0
TAR374G0468 Trochodendron aralioides HOM05D003551 ORTHO05D004869 4.4e-35 153.7 262 35.5
Cfa023305 Carpinus fangiana HOM05D003551 ORTHO05D004869 1.3e-34 152.1 401 30.2
Atru.chr11.1973 Acer truncatum HOM05D003551 ORTHO05D004869 3.5e-32 144.1 156 52.6
Actinidia08115 Actinidia chinensis HOM05D003551 ORTHO05D004869 5.2e-28 130.2 188 42.0
SHI17843 Sapria himalayana HOM05D003551 ORTHO05D000023 4.0e-20 104.0 214 34.1
HPP92_027088 Vanilla planifolia HOM05D003551 ORTHO05D004869 5.0e-15 87.0 161 39.1
unitig_22.g6421 Utricularia gibba HOM05D003551 ORTHO05D004869 2.9e-10 71.2 133 31.6
BcaB04g19498 Brassica carinata HOM05D003551 ORTHO05D004869 1.6e-08 65.5 121 33.9
HPP92_027649 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.6e-08 65.5 100 46.0
HPP92_028576 Vanilla planifolia HOM05D003551 ORTHO05D004869 5.0e-07 60.5 92 47.8
HPP92_006576 Vanilla planifolia HOM05D003551 ORTHO05D004869 6.6e-07 60.1 135 37.0


User provided reference genes

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