Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G18540 Trifolium pratense HOM05D002352 ORTHO05D016619 7.1e-33 143.3 69 100.0
TPR.G20335 Trifolium pratense HOM05D002352 ORTHO05D016619 1.0e-31 139.4 69 97.1
TPR.G10297 Trifolium pratense HOM05D002352 ORTHO05D003724 5.1e-23 110.5 70 84.3
Psat6g181080 Pisum sativum HOM05D002352 ORTHO05D003724 1.2e-21 105.9 70 81.4
Medtr1g094165 Medicago truncatula HOM05D002352 ORTHO05D003724 1.6e-21 105.5 70 81.4
Phvul.007G099200 Phaseolus vulgaris HOM05D002352 ORTHO05D003724 3.6e-21 104.4 70 80.0
Lalb_Chr21g0313661 Lupinus albus HOM05D002352 ORTHO05D003724 1.4e-20 102.4 70 77.1
Glyma.20G183400 Glycine max HOM05D002352 ORTHO05D003724 2.4e-20 101.7 70 77.1
Cfa000747 Carpinus fangiana HOM05D002352 ORTHO05D003724 5.2e-20 100.5 70 75.7
Ca_10540_v3 Cicer arietinum L. HOM05D002352 ORTHO05D003724 5.2e-20 100.5 70 78.6
Lalb_Chr02g0152081 Lupinus albus HOM05D002352 ORTHO05D003724 5.2e-20 100.5 70 77.1
Medtr8g023010 Medicago truncatula HOM05D002352 ORTHO05D003724 5.2e-20 100.5 70 75.7
Glyma.10G207500 Glycine max HOM05D002352 ORTHO05D003724 8.9e-20 99.8 70 75.7
CANSAT21G2414 Cannabis sativa HOM05D002352 ORTHO05D003724 4.4e-19 97.4 70 74.3
Lj5g0002534 Lotus japonicus HOM05D002352 ORTHO05D003724 4.4e-19 97.4 70 74.3
QL05p065250 Quercus lobata HOM05D002352 ORTHO05D003724 7.6e-19 96.7 70 74.3
Solyc02g078640.3 Solanum lycopersicum HOM05D002352 ORTHO05D003724 7.6e-19 96.7 70 72.9
Sopen02g023500 Solanum pennellii HOM05D002352 ORTHO05D003724 7.6e-19 96.7 70 72.9
Nitab4.5_0003063g0010 Nicotiana tabacum HOM05D002352 ORTHO05D003724 9.9e-19 96.3 70 72.9
Nitab4.5_0009488g0020 Nicotiana tabacum HOM05D002352 ORTHO05D003724 9.9e-19 96.3 70 72.9
Potri.001G443200 Populus trichocarpa HOM05D002352 ORTHO05D003724 1.3e-18 95.9 68 73.5
Potri.011G153700 Populus trichocarpa HOM05D002352 ORTHO05D003724 1.3e-18 95.9 68 73.5
Manes.16G062100 Manihot esculenta HOM05D002352 ORTHO05D003724 1.7e-18 95.5 68 73.5
Sabra11G0146000 Salix brachista HOM05D002352 ORTHO05D003724 1.7e-18 95.5 68 73.5
Sabra16G0299900 Salix brachista HOM05D002352 ORTHO05D003724 1.7e-18 95.5 68 72.1
Sabra16G0301500 Salix brachista HOM05D002352 ORTHO05D003724 1.7e-18 95.5 68 72.1
CiPaw.08G016100 Carya illinoinensis HOM05D002352 ORTHO05D003724 2.2e-18 95.1 70 72.9
CiPaw.07G217200 Carya illinoinensis HOM05D002352 ORTHO05D003724 2.9e-18 94.7 70 71.4
Lj1C1209G5 Lonicera japonica HOM05D002352 ORTHO05D003724 2.9e-18 94.7 68 75.0
arahy.Tifrunner.gnm1.ann1.Q9T26T Arachis hypogaea HOM05D002352 ORTHO05D003724 3.8e-18 94.4 67 76.1
arahy.Tifrunner.gnm1.ann1.XI7UL2 Arachis hypogaea HOM05D002352 ORTHO05D003724 3.8e-18 94.4 67 76.1
CAN.G1627.24 Capsicum annuum HOM05D002352 ORTHO05D003724 3.8e-18 94.4 70 71.4
Cpa.g.sc192.7 Carica papaya HOM05D002352 ORTHO05D003724 3.8e-18 94.4 70 72.9
GSVIVG01006792001 Vitis vinifera HOM05D002352 ORTHO05D003724 4.9e-18 94.0 70 71.4
MBI19_g16739_MAGBIO Magnolia biondii HOM05D002352 ORTHO05D003724 6.4e-18 93.6 68 72.1
Oeu043712.2 Olea europaea HOM05D002352 ORTHO05D003724 6.4e-18 93.6 70 70.0
SalBow8G3229 Salvia bowleyana HOM05D002352 ORTHO05D003724 6.4e-18 93.6 70 68.6
Dinv07525 Davidia involucrata HOM05D002352 ORTHO05D003724 8.4e-18 93.2 70 70.0
Atru.chr10.646 Acer truncatum HOM05D002352 ORTHO05D003724 1.4e-17 92.4 70 71.4
MBI19_g04166_MAGBIO Magnolia biondii HOM05D002352 ORTHO05D003724 1.4e-17 92.4 68 69.1
SGA_v2.0_scaffold22G09771 Striga asiatica HOM05D002352 ORTHO05D003724 1.4e-17 92.4 70 68.6
HPP92_026673 Vanilla planifolia HOM05D002352 ORTHO05D003724 1.4e-17 92.4 68 72.1
DCAR_004114 Daucus carota HOM05D002352 ORTHO05D003724 1.9e-17 92.0 67 70.1
FvH4_7g33390 Fragaria vesca HOM05D002352 ORTHO05D003724 1.9e-17 92.0 70 71.4
FAN01G0441 Fragaria x ananassa HOM05D002352 ORTHO05D003724 1.9e-17 92.0 70 71.4
FAN03G0871 Fragaria x ananassa HOM05D002352 ORTHO05D003724 1.9e-17 92.0 70 71.4
THA.LOC104798541 Tarenaya hassleriana HOM05D002352 ORTHO05D003724 1.9e-17 92.0 68 70.6
MSTRG.7313 Avicennia marina HOM05D002352 ORTHO05D003724 2.4e-17 91.7 70 67.1
Lj2C285G5 Lonicera japonica HOM05D002352 ORTHO05D003724 2.4e-17 91.7 70 68.6
Nn012s41459 Nelumbo nucifera HOM05D002352 ORTHO05D003724 2.4e-17 91.7 68 69.1
Nn1g06636 Nelumbo nucifera HOM05D002352 ORTHO05D003724 2.4e-17 91.7 68 69.1
HPP92_018014 Vanilla planifolia HOM05D002352 ORTHO05D003724 2.4e-17 91.7 68 70.6
Cc02_g12860 Coffea canephora HOM05D002352 ORTHO05D003724 3.2e-17 91.3 70 68.6
PSO541G4457 Papaver somniferum HOM05D002352 ORTHO05D003724 3.2e-17 91.3 68 67.6
Peaxi162Scf00524g00056 Petunia axillaris HOM05D002352 ORTHO05D003724 3.2e-17 91.3 68 72.1
Migut.M01176 Erythranthe guttata HOM05D002352 ORTHO05D003724 4.2e-17 90.9 70 68.6
RcHm_v2.0_Chr1g0383361 Rosa chinensis HOM05D002352 ORTHO05D003724 4.2e-17 90.9 70 70.0
Zm00001eb083320 Zea mays HOM05D002352 ORTHO05D016619 4.2e-17 90.9 70 68.6
Dinv40531 Davidia involucrata HOM05D002352 ORTHO05D003724 5.4e-17 90.5 70 67.1
Thecc.06G016700 Theobroma cacao HOM05D002352 ORTHO05D003724 5.4e-17 90.5 68 70.6
Aa31LG9G15920 Aethionema arabicum HOM05D002352 ORTHO05D003724 7.1e-17 90.1 70 70.0
FAN10G0813 Fragaria x ananassa HOM05D002352 ORTHO05D003724 7.1e-17 90.1 70 70.0
FAN10G3833 Fragaria x ananassa HOM05D002352 ORTHO05D003724 7.1e-17 90.1 70 70.0
CSS0019100 Camellia sinensis var. sinensis HOM05D002352 ORTHO05D003724 9.3e-17 89.7 70 70.0
Thhalv10016124m.g Eutrema salsugineum HOM05D002352 ORTHO05D003724 9.3e-17 89.7 67 71.6
Gohir.A05G113200 Gossypium hirsutum HOM05D002352 ORTHO05D003724 9.3e-17 89.7 68 69.1
ECA236G2885 Erigeron canadensis HOM05D002352 ORTHO05D003724 1.2e-16 89.4 68 67.6
MD07G1304000 Malus domestica HOM05D002352 ORTHO05D003724 1.2e-16 89.4 70 68.6
Zm00001eb149800 Zea mays HOM05D002352 ORTHO05D003724 1.2e-16 89.4 68 69.1
Aqoxy1G02582 Aquilegia oxysepala HOM05D002352 ORTHO05D003724 1.6e-16 89.0 68 66.2
Carub.0004s1734 Capsella rubella HOM05D002352 ORTHO05D003724 1.6e-16 89.0 70 68.6
CARHR129850 Cardamine hirsuta HOM05D002352 ORTHO05D003724 1.6e-16 89.0 70 68.6
Ciclev10014013m.g Citrus clementina HOM05D002352 ORTHO05D003724 1.6e-16 89.0 70 68.6
Eucgr.D00655 Eucalyptus grandis HOM05D002352 ORTHO05D003724 1.6e-16 89.0 70 67.1
Prupe.1G083500 Prunus persica HOM05D002352 ORTHO05D003724 1.6e-16 89.0 70 68.6
SGA_v2.0_scaffold100G29641 Striga asiatica HOM05D002352 ORTHO05D003724 2.1e-16 88.6 70 65.7
Zm00001eb369050 Zea mays HOM05D002352 ORTHO05D003724 2.1e-16 88.6 68 69.1
Actinidia07573 Actinidia chinensis HOM05D002352 ORTHO05D003724 2.7e-16 88.2 70 68.6
CDE05G2722 Ceratophyllum demersum HOM05D002352 ORTHO05D003724 2.7e-16 88.2 68 67.6
Gohir.D05G113700 Gossypium hirsutum HOM05D002352 ORTHO05D003724 2.7e-16 88.2 68 69.1
Gorai.009G117700 Gossypium raimondii HOM05D002352 ORTHO05D003724 2.7e-16 88.2 68 69.1
PGR004G1771 Punica granatum HOM05D002352 ORTHO05D003724 2.7e-16 88.2 70 65.7
ClCG01G025480 Citrullus lanatus HOM05D002352 ORTHO05D003724 3.5e-16 87.8 70 67.1
MELO3C007036.2 Cucumis melo HOM05D002352 ORTHO05D003724 3.5e-16 87.8 70 67.1
CsaV3_6G052730 Cucumis sativus L. HOM05D002352 ORTHO05D003724 3.5e-16 87.8 70 67.1
Duzib160G0039 Durio zibethinus HOM05D002352 ORTHO05D003724 3.5e-16 87.8 68 69.1
SHI23480 Sapria himalayana HOM05D002352 ORTHO05D016619 3.5e-16 87.8 67 68.7
Sed0013080 Sechium edule HOM05D002352 ORTHO05D003724 3.5e-16 87.8 70 67.1
Sp4g17870 Schrenkiella parvula HOM05D002352 ORTHO05D003724 4.6e-16 87.4 67 68.7
MD01G1232200 Malus domestica HOM05D002352 ORTHO05D003724 6.0e-16 87.0 70 65.7
AL4G31700 Arabidopsis lyrata HOM05D002352 ORTHO05D003724 7.8e-16 86.7 67 68.7
AT2G35630 Arabidopsis thaliana HOM05D002352 ORTHO05D003724 7.8e-16 86.7 67 68.7
BcaB01g03895 Brassica carinata HOM05D002352 ORTHO05D003724 7.8e-16 86.7 70 67.1
A03p19610 Brassica napus HOM05D002352 ORTHO05D003724 7.8e-16 86.7 70 67.1
C03p22870 Brassica napus HOM05D002352 ORTHO05D003724 7.8e-16 86.7 70 67.1
BraA03t11214Z Brassica rapa HOM05D002352 ORTHO05D003724 7.8e-16 86.7 70 67.1
BcaB02g09406 Brassica carinata HOM05D002352 ORTHO05D003724 1.0e-15 86.3 67 68.7
BcaC02g11684 Brassica carinata HOM05D002352 ORTHO05D003724 1.0e-15 86.3 67 68.7
A05p10050 Brassica napus HOM05D002352 ORTHO05D003724 1.0e-15 86.3 67 68.7
C04p12410 Brassica napus HOM05D002352 ORTHO05D003724 1.0e-15 86.3 67 68.7
BolC3t14686H Brassica oleracea HOM05D002352 ORTHO05D003724 1.0e-15 86.3 70 65.7
BolC4t22889H Brassica oleracea HOM05D002352 ORTHO05D003724 1.0e-15 86.3 67 68.7
BraA05t19946Z Brassica rapa HOM05D002352 ORTHO05D003724 1.0e-15 86.3 67 68.7
COL.COLO4_22862 Corchorus olitorius HOM05D002352 ORTHO05D003724 1.0e-15 86.3 68 63.2
Os01g0816400 Oryza sativa ssp. japonica HOM05D002352 ORTHO05D003724 1.7e-15 85.5 67 68.7
EL10Ac8g20329 Beta vulgaris HOM05D002352 ORTHO05D003724 3.0e-15 84.7 67 67.2
Lsat_1_v5_gn_7_48800 Lactuca sativa HOM05D002352 ORTHO05D003724 3.0e-15 84.7 68 67.6
TWI60G0805 Tripterygium wilfordii HOM05D002352 ORTHO05D003724 3.0e-15 84.7 68 66.2
TWI32G1048 Tripterygium wilfordii HOM05D002352 ORTHO05D003724 3.9e-15 84.3 68 66.2
TAR624G0538 Trochodendron aralioides HOM05D003782 ORTHO05D003724 3.9e-15 84.3 68 66.2
Lalb_Chr21g0313501 Lupinus albus HOM05D002352 ORTHO05D003724 5.1e-15 84.0 67 67.2
Ah.14g089230 Amaranthus hybridus HOM05D002352 ORTHO05D003724 8.7e-15 83.2 67 67.2
SEGI_02636 Sequoiadendron giganteum HOM05D002352 ORTHO05D003724 1.5e-14 82.4 68 67.6
Ah.09g235790 Amaranthus hybridus HOM05D002352 ORTHO05D003724 1.9e-14 82.0 67 65.7
SMO230G0112 Selaginella moellendorffii HOM05D002352 ORTHO05D003724 2.5e-14 81.6 67 61.2
AUR62014778 Chenopodium quinoa HOM05D002352 ORTHO05D003724 3.3e-14 81.3 67 65.7
AUR62016965 Chenopodium quinoa HOM05D002352 ORTHO05D003724 3.3e-14 81.3 67 65.7
Hund21252 Selenicereus undatus HOM05D002352 ORTHO05D003724 3.3e-14 81.3 67 65.7
Zm00001eb214370 Zea mays HOM05D002352 ORTHO05D016619 3.3e-14 81.3 66 63.6
Sc17g0006350 Simmondsia chinensis HOM05D002352 ORTHO05D003724 4.3e-14 80.9 68 63.2
ATR1127G018 Amborella trichopoda HOM05D002352 ORTHO05D003724 9.6e-14 79.7 68 60.3
vmacro15889 Vaccinium macrocarpon HOM05D002352 ORTHO05D003724 9.6e-14 79.7 70 62.9
Lsat_1_v5_gn_7_19361 Lactuca sativa HOM05D002352 ORTHO05D003724 1.3e-13 79.3 68 63.2
Rhsim02G0123500 Rhododendron simsii HOM05D002352 ORTHO05D003724 1.3e-13 79.3 70 64.3
unitig_46.g18629 Utricularia gibba HOM05D002352 ORTHO05D003724 2.1e-13 78.6 68 60.3
RhsimUnG0043500 Rhododendron simsii HOM05D002352 ORTHO05D003724 6.2e-13 77.0 70 64.3
HanXRQChr04g0123991 Helianthus annuus HOM05D002352 ORTHO05D003724 3.1e-12 74.7 68 60.3
unitig_37.g12343 Utricularia gibba HOM05D002352 ORTHO05D003724 3.1e-12 74.7 68 58.8
AagrBONN_evm.TU.Sc2ySwM_228.3370 Anthoceros agrestis HOM05D002352 ORTHO05D003724 5.3e-12 73.9 67 56.7
Haze_05987 Corylus avellana HOM05D002352 ORTHO05D003724 5.3e-12 73.9 66 59.1
SEGI_16535 Sequoiadendron giganteum HOM05D002352 ORTHO05D003724 6.9e-12 73.6 67 61.2
Pp3c9_24390 Physcomitrium patens HOM05D002352 ORTHO05D003724 2.6e-11 71.6 68 55.9
TPR.G28589 Trifolium pratense HOM05D002352 ORTHO05D016619 5.8e-11 70.5 37 91.9
Pp3c15_23870 Physcomitrium patens HOM05D002352 ORTHO05D003724 7.6e-11 70.1 68 54.4
Mapoly0009s0135 Marchantia polymorpha HOM05D002352 ORTHO05D003724 1.3e-10 69.3 70 52.9
HanXRQChr13g0393551 Helianthus annuus HOM05D002352 ORTHO05D003724 8.4e-10 66.6 68 52.9
TPR.G40013 Trifolium pratense HOM05D002352 ORTHO05D014906 8.4e-10 66.6 40 85.0
CBR_g39205 Chara braunii HOM05D002352 ORTHO05D003724 1.1e-09 66.2 73 49.3
Zm00001eb149590 Zea mays HOM05D002352 ORTHO05D016619 1.4e-09 65.9 52 65.4
TAR636G1029 Trochodendron aralioides HOM05D002352 ORTHO05D002410 1.9e-09 65.5 54 66.7
CDE05G3196 Ceratophyllum demersum HOM05D002352 ORTHO05D003724 7.9e-08 60.1 41 73.2


User provided reference genes

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