Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G18536 Trifolium pratense HOM05D000961 ORTHO05D000841 7.8e-52 206.8 103 100.0
TPR.G2636 Trifolium pratense HOM05D000961 ORTHO05D000841 2.8e-41 171.8 102 86.3
Medtr1g084090 Medicago truncatula HOM05D000961 ORTHO05D000841 3.4e-39 164.9 106 78.3
Ca_10174_v3 Cicer arietinum L. HOM05D000961 ORTHO05D000841 3.2e-37 158.3 104 77.9
Psat0s3278g0080 Pisum sativum HOM05D000961 ORTHO05D000841 6.6e-35 150.6 106 73.6
Phvul.007G201500 Phaseolus vulgaris HOM05D000961 ORTHO05D000841 3.4e-31 138.3 106 66.0
VMungo0720G1251 Vigna mungo HOM05D000961 ORTHO05D000841 9.9e-31 136.7 106 65.1
Lj5g0012800 Lotus japonicus HOM05D000961 ORTHO05D000841 2.9e-30 135.2 106 65.1
Glyma.10G146900 Glycine max HOM05D000961 ORTHO05D000841 4.9e-30 134.4 106 63.2
Glyma.20G097001 Glycine max HOM05D000961 ORTHO05D000841 1.2e-28 129.8 106 61.3
Lalb_Chr21g0310271 Lupinus albus HOM05D000961 ORTHO05D000841 3.5e-28 128.3 106 62.3
arahy.Tifrunner.gnm1.ann1.861X9K Arachis hypogaea HOM05D000961 ORTHO05D000841 5.1e-27 124.4 105 59.0
arahy.Tifrunner.gnm1.ann1.48N9T6 Arachis hypogaea HOM05D000961 ORTHO05D000841 6.6e-27 124.0 106 60.4
arahy.Tifrunner.gnm1.ann1.Q6JGBF Arachis hypogaea HOM05D000961 ORTHO05D000841 6.6e-27 124.0 105 59.0
arahy.Tifrunner.gnm1.ann1.N1S3JP Arachis hypogaea HOM05D000961 ORTHO05D000841 2.5e-26 122.1 106 59.4
CiPaw.08G155300 Carya illinoinensis HOM05D000961 ORTHO05D000841 6.2e-25 117.5 106 57.5
Lalb_Chr02g0147801 Lupinus albus HOM05D000961 ORTHO05D000841 6.2e-25 117.5 102 59.8
QL03p013767 Quercus lobata HOM05D000961 ORTHO05D000841 3.1e-24 115.2 105 57.1
Lj5C332T3 Lonicera japonica HOM05D000961 ORTHO05D000841 8.9e-24 113.6 106 54.7
QL03p008646 Quercus lobata HOM05D000961 ORTHO05D000841 2.0e-23 112.5 105 55.2
CANSAT54G2390 Cannabis sativa HOM05D000961 ORTHO05D000841 3.4e-23 111.7 106 53.8
CiPaw.07G029900 Carya illinoinensis HOM05D000961 ORTHO05D000841 7.6e-23 110.5 106 54.7
Atru.chr2.200 Acer truncatum HOM05D000961 ORTHO05D000841 9.9e-23 110.2 102 56.9
Manes.09G177000 Manihot esculenta HOM05D000961 ORTHO05D000841 3.8e-22 108.2 106 50.9
Haze_04059 Corylus avellana HOM05D000961 ORTHO05D000841 1.4e-21 106.3 106 55.7
Prupe.6G312700 Prunus persica HOM05D000961 ORTHO05D000841 1.9e-21 105.9 104 53.8
GSVIVG01031243001 Vitis vinifera HOM05D000961 ORTHO05D000841 1.9e-21 105.9 106 50.9
COL.COLO4_05549 Corchorus olitorius HOM05D000961 ORTHO05D000841 4.2e-21 104.8 106 50.9
Dinv30896 Davidia involucrata HOM05D000961 ORTHO05D000841 7.1e-21 104.0 106 52.8
Potri.013G008500 Populus trichocarpa HOM05D000961 ORTHO05D000841 7.1e-21 104.0 106 50.9
Eucgr.H03293 Eucalyptus grandis HOM05D000961 ORTHO05D000841 1.6e-20 102.8 104 48.1
CAN.G1076.15 Capsicum annuum HOM05D000961 ORTHO05D000841 2.1e-20 102.4 105 52.4
TAR633G1496 Trochodendron aralioides HOM05D000961 ORTHO05D000841 2.7e-20 102.1 106 49.1
Thecc.05G323300 Theobroma cacao HOM05D000961 ORTHO05D000841 3.5e-20 101.7 106 48.1
FAN02G3224 Fragaria x ananassa HOM05D000961 ORTHO05D000841 4.6e-20 101.3 105 50.5
FvH4_6g07470 Fragaria vesca HOM05D000961 ORTHO05D000841 6.0e-20 100.9 105 50.5
RcHm_v2.0_Chr3g0457131 Rosa chinensis HOM05D000961 ORTHO05D000841 7.8e-20 100.5 106 48.1
Dinv24447 Davidia involucrata HOM05D000961 ORTHO05D000841 1.0e-19 100.1 106 48.1
Solyc01g100530.3 Solanum lycopersicum HOM05D000961 ORTHO05D000841 1.3e-19 99.8 104 52.9
Sopen01g044040 Solanum pennellii HOM05D000961 ORTHO05D000841 1.7e-19 99.4 104 51.9
Ciclev10000144m.g Citrus clementina HOM05D000961 ORTHO05D000841 3.0e-19 98.6 102 47.1
FAN05G2064 Fragaria x ananassa HOM05D000961 ORTHO05D000841 3.0e-19 98.6 105 48.6
Duzib128G0898 Durio zibethinus HOM05D000961 ORTHO05D000841 5.1e-19 97.8 106 49.1
FAN14G0354 Fragaria x ananassa HOM05D000961 ORTHO05D000841 6.6e-19 97.4 101 51.5
Nitab4.5_0002033g0010 Nicotiana tabacum HOM05D000961 ORTHO05D000841 1.1e-18 96.7 106 50.9
Rhsim05G0127100 Rhododendron simsii HOM05D000961 ORTHO05D000841 1.1e-18 96.7 104 51.0
MBI19_g40069_MAGBIO Magnolia biondii HOM05D000961 ORTHO05D000841 3.3e-18 95.1 106 46.2
Sed0023483 Sechium edule HOM05D000961 ORTHO05D000841 3.3e-18 95.1 105 45.7
MELO3C004180.2 Cucumis melo HOM05D000961 ORTHO05D000841 5.6e-18 94.4 106 45.3
Actinidia01503 Actinidia chinensis HOM05D000961 ORTHO05D000841 7.3e-18 94.0 104 48.1
ClCG02G014880 Citrullus lanatus HOM05D000961 ORTHO05D000841 9.6e-18 93.6 106 45.3
MD04G1215200 Malus domestica HOM05D000961 ORTHO05D000841 9.6e-18 93.6 104 46.2
CsaV3_2G007130 Cucumis sativus L. HOM05D000961 ORTHO05D000841 1.3e-17 93.2 106 44.3
Gorai.007G306600 Gossypium raimondii HOM05D000961 ORTHO05D000841 1.6e-17 92.8 106 45.3
MBI19_g34870_MAGBIO Magnolia biondii HOM05D000961 ORTHO05D000841 1.6e-17 92.8 106 45.3
Nn3g21707 Nelumbo nucifera HOM05D000961 ORTHO05D000841 1.6e-17 92.8 106 46.2
Nitab4.5_0000368g0030 Nicotiana tabacum HOM05D000961 ORTHO05D000841 1.6e-17 92.8 106 50.0
Nn4g25586 Nelumbo nucifera HOM05D000961 ORTHO05D000841 2.1e-17 92.4 102 48.0
Gohir.D11G283700 Gossypium hirsutum HOM05D000961 ORTHO05D000841 2.8e-17 92.0 106 45.3
MD12G1205600 Malus domestica HOM05D000961 ORTHO05D000841 2.8e-17 92.0 102 45.1
TWI12G1045 Tripterygium wilfordii HOM05D000961 ORTHO05D000841 2.8e-17 92.0 103 50.5
Gohir.A13G112200 Gossypium hirsutum HOM05D000961 ORTHO05D000841 8.1e-17 90.5 105 44.8
Gohir.D13G115150 Gossypium hirsutum HOM05D000961 ORTHO05D000841 1.4e-16 89.7 103 44.7
Gorai.013G129500 Gossypium raimondii HOM05D000961 ORTHO05D000841 1.4e-16 89.7 103 44.7
Sc16g0009060 Simmondsia chinensis HOM05D000961 ORTHO05D000841 1.8e-16 89.4 106 43.4
Aqoxy5G03622 Aquilegia oxysepala HOM05D000961 ORTHO05D000841 9.0e-16 87.0 106 42.5
Sed0012700 Sechium edule HOM05D000961 ORTHO05D000841 1.5e-15 86.3 106 42.5
Gohir.A11G273600 Gossypium hirsutum HOM05D000961 ORTHO05D000841 2.0e-15 85.9 106 44.3
Cc02_g35060 Coffea canephora HOM05D000961 ORTHO05D000841 2.6e-15 85.5 105 43.8
PSO210G6526 Papaver somniferum HOM05D000961 ORTHO05D000841 3.4e-15 85.1 106 39.6
PGR031G2618 Punica granatum HOM05D000961 ORTHO05D000841 3.4e-15 85.1 100 47.0
HanXRQChr15g0466261 Helianthus annuus HOM05D000961 ORTHO05D000841 1.3e-14 83.2 106 43.4
AUR62006744 Chenopodium quinoa HOM05D000961 ORTHO05D000841 2.2e-14 82.4 102 43.1
Peaxi162Scf00673g00048 Petunia axillaris HOM05D000961 ORTHO05D000841 2.9e-14 82.0 82 50.0
SalBow3G2732 Salvia bowleyana HOM05D000961 ORTHO05D000841 2.9e-14 82.0 106 43.4
CSS0020116 Camellia sinensis var. sinensis HOM05D000961 ORTHO05D000841 3.8e-14 81.6 66 57.6
Lsat_1_v5_gn_7_74900 Lactuca sativa HOM05D000961 ORTHO05D000841 1.9e-13 79.3 106 41.5
Os03g0308200 Oryza sativa ssp. japonica HOM05D000961 ORTHO05D000841 4.2e-13 78.2 106 38.7
MSTRG.27941 Avicennia marina HOM05D000961 ORTHO05D000841 5.4e-13 77.8 106 38.7
AUR62000389 Chenopodium quinoa HOM05D000961 ORTHO05D000841 5.4e-13 77.8 102 41.2
Oeu064826.1 Olea europaea HOM05D000961 ORTHO05D000841 7.1e-13 77.4 106 41.5
SGA_v2.0_scaffold5G02890 Striga asiatica HOM05D000961 ORTHO05D000841 9.3e-13 77.0 104 39.4
Ah.06g188190 Amaranthus hybridus HOM05D000961 ORTHO05D000841 1.6e-12 76.3 106 39.6
ECA236G3865 Erigeron canadensis HOM05D000961 ORTHO05D000841 2.1e-12 75.9 106 41.5
EL10Ac4g09459 Beta vulgaris HOM05D000961 ORTHO05D000841 2.7e-12 75.5 102 39.2
CDE12G0272 Ceratophyllum demersum HOM05D000961 ORTHO05D000841 2.7e-12 75.5 101 37.6
Migut.N01374 Erythranthe guttata HOM05D000961 ORTHO05D000841 3.5e-12 75.1 106 41.5
BcaC02g11531 Brassica carinata HOM05D000961 ORTHO05D000841 4.6e-12 74.7 102 37.3
C04p14330 Brassica napus HOM05D000961 ORTHO05D000841 4.6e-12 74.7 102 37.3
C07p41370 Brassica napus HOM05D000961 ORTHO05D000841 4.6e-12 74.7 102 36.3
BolC4t23018H Brassica oleracea HOM05D000961 ORTHO05D000841 4.6e-12 74.7 102 37.3
THA.LOC104818746 Tarenaya hassleriana HOM05D000961 ORTHO05D000841 4.6e-12 74.7 103 38.8
ATR0796G155 Amborella trichopoda HOM05D000961 ORTHO05D000841 6.0e-12 74.3 107 35.5
DCAR_025285 Daucus carota HOM05D000961 ORTHO05D000841 7.8e-12 73.9 101 40.6
Hund07314 Selenicereus undatus HOM05D000961 ORTHO05D000841 7.8e-12 73.9 107 37.4
AT5G26850 Arabidopsis thaliana HOM05D000961 ORTHO05D000841 1.7e-11 72.8 102 35.3
AL6G38720 Arabidopsis lyrata HOM05D000961 ORTHO05D000841 3.9e-11 71.6 102 35.3
Thhalv10003593m.g Eutrema salsugineum HOM05D000961 ORTHO05D000841 5.1e-11 71.2 102 34.3
Zm00001eb014760 Zea mays HOM05D000961 ORTHO05D000841 5.1e-11 71.2 101 35.6
A09p05630 Brassica napus HOM05D000961 ORTHO05D000841 1.1e-10 70.1 102 36.3
BraA09t36205Z Brassica rapa HOM05D000961 ORTHO05D000841 1.1e-10 70.1 102 36.3
Aa31LG11G9800 Aethionema arabicum HOM05D000961 ORTHO05D000841 1.5e-10 69.7 102 36.3
BcaB04g19709 Brassica carinata HOM05D000961 ORTHO05D000841 1.5e-10 69.7 102 36.3
BolC7t44667H Brassica oleracea HOM05D000961 ORTHO05D000841 1.5e-10 69.7 101 35.6
Carub.0006s2451 Capsella rubella HOM05D000961 ORTHO05D000841 1.5e-10 69.7 102 34.3
BolC9t53544H Brassica oleracea HOM05D000961 ORTHO05D000841 1.9e-10 69.3 102 36.3
BcaNung03669 Brassica carinata HOM05D000961 ORTHO05D000841 2.5e-10 68.9 96 36.5
A06p37070 Brassica napus HOM05D000961 ORTHO05D000841 3.3e-10 68.6 106 33.0
BraA06t26632Z Brassica rapa HOM05D000961 ORTHO05D000841 3.3e-10 68.6 106 33.0
Sp2g21150 Schrenkiella parvula HOM05D000961 ORTHO05D000841 3.3e-10 68.6 102 33.3
BcaC04g23671 Brassica carinata HOM05D000961 ORTHO05D000841 4.3e-10 68.2 102 36.3
C09p06240 Brassica napus HOM05D000961 ORTHO05D000841 4.3e-10 68.2 102 36.3
HPP92_005413 Vanilla planifolia HOM05D000961 ORTHO05D000841 2.1e-09 65.9 105 32.4
BcaC04g23672 Brassica carinata HOM05D000961 ORTHO05D000841 2.8e-09 65.5 91 39.6
Ah.06g188060 Amaranthus hybridus HOM05D000961 ORTHO05D000841 4.8e-09 64.7 98 38.8
unitig_899.g15631 Utricularia gibba HOM05D000961 ORTHO05D000841 6.2e-09 64.3 108 39.8
CDE01G0158 Ceratophyllum demersum HOM05D000961 ORTHO05D000841 8.1e-09 63.9 101 32.7
CARHR186680 Cardamine hirsuta HOM05D000961 ORTHO05D000841 2.4e-08 62.4 102 31.4
Glyma.20G097400 Glycine max HOM05D000961 ORTHO05D000841 4.9e-06 54.7 64 43.8


User provided reference genes

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