Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G18511 Trifolium pratense HOM05D003666 ORTHO05D004770 5.7e-124 447.6 226 100.0
Medtr0082s0060 Medicago truncatula HOM05D003666 ORTHO05D004770 3.8e-67 258.8 186 73.7
arahy.Tifrunner.gnm1.ann1.DQZY30 Arachis hypogaea HOM05D003666 ORTHO05D004770 8.1e-62 241.1 250 59.2
arahy.Tifrunner.gnm1.ann1.G61VPX Arachis hypogaea HOM05D003666 ORTHO05D004770 8.1e-62 241.1 250 59.2
RcHm_v2.0_MTg0498651 Rosa chinensis HOM05D003666 ORTHO05D004770 7.9e-57 224.6 243 57.2
arahy.Tifrunner.gnm1.ann1.A5I0RB Arachis hypogaea HOM05D003666 ORTHO05D004770 1.4e-53 213.8 210 59.0
LjContig00439g0017912 Lotus japonicus HOM05D003666 ORTHO05D004770 1.3e-43 180.6 95 93.7
LjContig00439g0019818 Lotus japonicus HOM05D003666 ORTHO05D004770 1.3e-43 180.6 95 93.7
BraSC177t45766Z Brassica rapa HOM05D003666 ORTHO05D004770 3.6e-41 172.6 146 64.4
BraSC77t46648Z Brassica rapa HOM05D003666 ORTHO05D004770 3.6e-41 172.6 146 64.4
Sp3g25750 Schrenkiella parvula HOM05D003666 ORTHO05D004770 3.6e-41 172.6 146 64.4
Thhalv10015949m.g Eutrema salsugineum HOM05D003666 ORTHO05D004770 1.0e-40 171.0 99 86.9
Potri.007G061921 Populus trichocarpa HOM05D003666 ORTHO05D004770 1.4e-40 170.6 95 90.5
DCAR_032432 Daucus carota HOM05D003666 ORTHO05D004770 3.9e-40 169.1 129 69.0
Sed0020058 Sechium edule HOM05D003666 ORTHO05D004770 6.7e-40 168.3 95 88.4
Lj2A1228G69 Lonicera japonica HOM05D003666 ORTHO05D004770 1.1e-39 167.5 95 88.4
PSO210G0035 Papaver somniferum HOM05D003666 ORTHO05D004770 2.0e-39 166.8 95 87.4
ATMG00580 Arabidopsis thaliana HOM05D003666 ORTHO05D004770 3.3e-39 166.0 95 88.4
Lalb_Chr00c24g0407361 Lupinus albus HOM05D003666 ORTHO05D004770 2.2e-38 163.3 86 95.3
Lalb_Chr01g0010981 Lupinus albus HOM05D003666 ORTHO05D004770 2.2e-38 163.3 86 95.3
Aa31csc553G50 Aethionema arabicum HOM05D003666 ORTHO05D004770 1.1e-37 161.0 151 62.9
Solyc00g013180.1 Solanum lycopersicum HOM05D003666 ORTHO05D004770 3.1e-37 159.5 94 87.2
Ah.10g028210 Amaranthus hybridus HOM05D003666 ORTHO05D004770 4.1e-37 159.1 146 60.3
Ah.10g028760 Amaranthus hybridus HOM05D003666 ORTHO05D004770 4.1e-37 159.1 146 60.3
Nitab4.5_0001788g0230 Nicotiana tabacum HOM05D003666 ORTHO05D004770 1.2e-36 157.5 114 77.2
AUR62042334 Chenopodium quinoa HOM05D003666 ORTHO05D004770 2.0e-36 156.8 95 84.2
Lsat_1_v5_gn_4_39621 Lactuca sativa HOM05D003666 ORTHO05D004770 4.5e-36 155.6 146 59.6
HanXRQMTg0579201 Helianthus annuus HOM05D003666 ORTHO05D004770 2.2e-35 153.3 146 58.2
AL3G44310 Arabidopsis lyrata HOM05D003666 ORTHO05D004770 3.8e-35 152.5 86 90.7
Nn1g09940 Nelumbo nucifera HOM05D003666 ORTHO05D004770 1.4e-34 150.6 86 88.4
Nn1g10170 Nelumbo nucifera HOM05D003666 ORTHO05D004770 1.4e-34 150.6 86 88.4
HanXRQChr02g0045121 Helianthus annuus HOM05D003666 ORTHO05D004770 1.9e-34 150.2 146 57.5
Lsat_1_v5_gn_3_108200 Lactuca sativa HOM05D003666 ORTHO05D004770 1.9e-34 150.2 95 81.1
Lalb_Chr06g0172221 Lupinus albus HOM05D003666 ORTHO05D004770 1.9e-34 150.2 86 90.7
Lalb_Chr06g0172341 Lupinus albus HOM05D003666 ORTHO05D004770 1.9e-34 150.2 86 90.7
Solyc00g500187.1 Solanum lycopersicum HOM05D003666 ORTHO05D004770 1.6e-33 147.1 86 88.4
Solyc00g500251.1 Solanum lycopersicum HOM05D003666 ORTHO05D004770 1.6e-33 147.1 86 88.4
Sopen11g018270 Solanum pennellii HOM05D003666 ORTHO05D004770 1.6e-33 147.1 86 88.4
Psat4g185400 Pisum sativum HOM05D003666 ORTHO05D004770 4.7e-33 145.6 86 83.7
SHI12194 Sapria himalayana HOM05D003666 ORTHO05D004770 6.1e-33 145.2 93 78.5
CAN.G65.28 Capsicum annuum HOM05D003666 ORTHO05D004770 7.9e-33 144.8 86 87.2
Gohir.A12G076865 Gossypium hirsutum HOM05D003666 ORTHO05D004770 1.0e-32 144.4 86 86.0
unitig_87.g28023 Utricularia gibba HOM05D003666 ORTHO05D004770 1.8e-32 143.7 86 86.0
Nitab4.5_0000172g0090 Nicotiana tabacum HOM05D003666 ORTHO05D004770 5.1e-32 142.1 96 78.1
SalBow1G6983 Salvia bowleyana HOM05D003666 ORTHO05D004770 1.7e-30 137.1 155 55.5
Sed0023789 Sechium edule HOM05D003666 ORTHO05D004770 1.7e-30 137.1 95 78.9
MELO3C030345.2 Cucumis melo HOM05D003666 ORTHO05D004770 2.2e-30 136.7 175 52.6
Nitab4.5_0006085g0010 Nicotiana tabacum HOM05D003666 ORTHO05D004770 2.8e-30 136.3 96 71.9
SEGI_24024 Sequoiadendron giganteum HOM05D003666 ORTHO05D004770 6.3e-30 135.2 95 73.7
SEGI_34311 Sequoiadendron giganteum HOM05D003666 ORTHO05D004770 6.3e-30 135.2 95 73.7
Gohir.D09G016300 Gossypium hirsutum HOM05D003666 ORTHO05D004770 8.2e-30 134.8 86 82.6
BolC4t23491H Brassica oleracea HOM05D003666 ORTHO05D004770 3.1e-29 132.9 74 87.8
TPR.G40510 Trifolium pratense HOM05D003666 ORTHO05D004770 3.2e-26 122.9 60 96.7
Peaxi162Scf00147g00311 Petunia axillaris HOM05D003666 ORTHO05D004770 1.1e-23 114.4 64 87.5
Nitab4.5_0000172g1740 Nicotiana tabacum HOM05D003666 ORTHO05D004770 5.7e-23 112.1 97 63.9
Lalb_Chr00c54g0413571 Lupinus albus HOM05D003666 ORTHO05D004770 6.5e-19 98.6 48 97.9
Hma1.2p1_0257F.1_g103600 Hydrangea macrophylla HOM05D003666 ORTHO05D004770 7.2e-18 95.1 56 89.3
Haze_26858 Corylus avellana HOM05D000729 ORTHO05D001063 1.2e-17 94.4 95 49.5
arahy.Tifrunner.gnm1.ann1.4X04Y3 Arachis hypogaea HOM05D003666 ORTHO05D004770 1.8e-13 80.5 44 88.6
Oeu022812.1 Olea europaea HOM05D003666 ORTHO05D004770 3.1e-13 79.7 71 66.2
SMO053G0008 Selaginella moellendorffii HOM05D003666 ORTHO05D004770 7.0e-13 78.6 130 43.1
Peaxi162Scf01767g00002 Petunia axillaris HOM05D003666 ORTHO05D004770 1.6e-12 77.4 48 87.5
SEGI_03857 Sequoiadendron giganteum HOM05D003666 ORTHO05D004770 2.0e-12 77.0 59 66.1
Haze_27149 Corylus avellana HOM05D003666 ORTHO05D004770 8.5e-11 71.6 96 39.6
SEGI_13011 Sequoiadendron giganteum HOM05D001200 ORTHO05D002731 7.2e-10 68.6 103 36.9
TAR022G0002 Trochodendron aralioides HOM05D003666 ORTHO05D004770 5.7e-07 58.9 73 41.1
DCAR_032536 Daucus carota HOM05D001200 ORTHO05D002731 9.8e-07 58.2 112 31.2
CAN.G1.7 Capsicum annuum HOM05D003666 ORTHO05D004770 1.3e-06 57.8 35 85.7
QL93p0790_0012 Quercus lobata HOM05D003666 ORTHO05D004770 1.7e-06 57.4 61 49.2
Peaxi162Scf00030g02118 Petunia axillaris HOM05D001200 ORTHO05D002731 4.9e-06 55.8 112 28.6
Solyc10g045765.1 Solanum lycopersicum HOM05D003666 ORTHO05D004770 4.9e-06 55.8 35 68.6
HanXRQChr00c0196g0572481 Helianthus annuus HOM05D001200 ORTHO05D002731 6.3e-06 55.5 112 30.4
HanXRQChr00c0690g0576761 Helianthus annuus HOM05D001200 ORTHO05D002731 6.3e-06 55.5 112 30.4
HanXRQChr02g0059711 Helianthus annuus HOM05D001200 ORTHO05D002731 6.3e-06 55.5 112 30.4
HanXRQChr03g0073091 Helianthus annuus HOM05D001200 ORTHO05D002731 6.3e-06 55.5 112 30.4
HanXRQChr05g0152431 Helianthus annuus HOM05D001200 ORTHO05D002731 6.3e-06 55.5 112 30.4
HanXRQChr06g0183001 Helianthus annuus HOM05D001200 ORTHO05D002731 6.3e-06 55.5 112 30.4
HanXRQChr09g0258521 Helianthus annuus HOM05D001200 ORTHO05D002731 6.3e-06 55.5 112 30.4
HanXRQChr11g0323741 Helianthus annuus HOM05D001200 ORTHO05D002731 6.3e-06 55.5 112 30.4
HanXRQCPg0580351 Helianthus annuus HOM05D001200 ORTHO05D002731 6.3e-06 55.5 112 30.4


User provided reference genes

Program Settings