Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G18488 Trifolium pratense HOM05D001676 ORTHO05D001539 9.5e-99 363.6 197 100.0
Psat6g117680 Pisum sativum HOM05D001676 ORTHO05D001539 4.3e-83 311.6 196 87.8
Ca_09855_v3 Cicer arietinum L. HOM05D001676 ORTHO05D001539 5.4e-78 294.7 196 85.7
Medtr1g075740 Medicago truncatula HOM05D001676 ORTHO05D001539 7.1e-78 294.3 191 84.8
VMungo0720G1476 Vigna mungo HOM05D001676 ORTHO05D001539 6.6e-76 287.7 198 83.3
Lj5g0006991 Lotus japonicus HOM05D001676 ORTHO05D001539 8.6e-76 287.3 198 81.8
Phvul.010G067273 Phaseolus vulgaris HOM05D001676 ORTHO05D001539 2.4e-70 269.2 193 81.3
Lalb_Chr02g0150231 Lupinus albus HOM05D001676 ORTHO05D001539 7.8e-69 264.2 185 78.4
Glyma.10G182300 Glycine max HOM05D001676 ORTHO05D001539 3.0e-68 262.3 198 78.8
Glyma.10G004100 Glycine max HOM05D001676 ORTHO05D001539 9.3e-62 240.7 197 69.0
arahy.Tifrunner.gnm1.ann1.7F0WTK Arachis hypogaea HOM05D001676 ORTHO05D001539 4.3e-59 231.9 185 70.8
Lj6g0007164 Lotus japonicus HOM05D001676 ORTHO05D001539 5.6e-59 231.5 197 66.0
Glyma.02G004200 Glycine max HOM05D001676 ORTHO05D001539 2.0e-56 223.0 192 65.1
Lalb_Chr06g0169151 Lupinus albus HOM05D001676 ORTHO05D001539 3.8e-55 218.8 208 64.4
CiPaw.02G110700 Carya illinoinensis HOM05D001676 ORTHO05D001539 3.3e-51 205.7 195 63.1
Cfa014719 Carpinus fangiana HOM05D001676 ORTHO05D001539 5.6e-51 204.9 197 64.5
Dinv29846 Davidia involucrata HOM05D001676 ORTHO05D001539 3.7e-50 202.2 194 62.9
Glyma.20G207700 Glycine max HOM05D001676 ORTHO05D001539 4.8e-50 201.8 152 77.6
Medtr1g041465 Medicago truncatula HOM05D001676 ORTHO05D001539 8.1e-50 201.1 194 60.8
Ca_12150_v3 Cicer arietinum L. HOM05D001676 ORTHO05D001539 1.8e-49 199.9 197 61.4
QL06p018506 Quercus lobata HOM05D001676 ORTHO05D001539 3.1e-49 199.1 194 63.9
TPR.G25163 Trifolium pratense HOM05D001676 ORTHO05D001539 9.0e-49 197.6 192 62.0
CSS0046642 Camellia sinensis var. sinensis HOM05D001676 ORTHO05D001539 5.5e-46 188.3 194 61.3
Thecc.04G257700 Theobroma cacao HOM05D001676 ORTHO05D001539 7.1e-46 188.0 195 59.0
Duzib151G0984 Durio zibethinus HOM05D001676 ORTHO05D001539 9.3e-46 187.6 176 62.5
Prupe.1G041100 Prunus persica HOM05D001676 ORTHO05D001539 9.3e-46 187.6 195 62.6
Phvul.007G277200 Phaseolus vulgaris HOM05D001676 ORTHO05D001539 3.5e-45 185.7 191 58.1
Manes.03G163000 Manihot esculenta HOM05D001676 ORTHO05D001539 6.0e-45 184.9 199 57.3
Ciclev10004168m.g Citrus clementina HOM05D001676 ORTHO05D001539 1.8e-44 183.3 200 59.0
Potri.010G070200 Populus trichocarpa HOM05D001676 ORTHO05D001539 1.8e-44 183.3 180 60.6
Sabra10G0037100 Salix brachista HOM05D001676 ORTHO05D001539 1.1e-43 180.6 180 59.4
TWI09G0719 Tripterygium wilfordii HOM05D001676 ORTHO05D001539 9.6e-43 177.6 174 62.1
GSVIVG01027840001 Vitis vinifera HOM05D001676 ORTHO05D001539 9.6e-43 177.6 200 60.5
arahy.Tifrunner.gnm1.ann1.JB2S8U Arachis hypogaea HOM05D001676 ORTHO05D001539 2.1e-42 176.4 199 59.8
Sed0015305 Sechium edule HOM05D001676 ORTHO05D001539 4.8e-42 175.3 194 57.7
MD16G1220700 Malus domestica HOM05D001676 ORTHO05D001539 8.2e-42 174.5 197 60.4
Duzib052G0282 Durio zibethinus HOM05D001676 ORTHO05D001539 6.9e-41 171.4 194 57.2
TAR633G1347 Trochodendron aralioides HOM05D001676 ORTHO05D001539 2.0e-40 169.9 196 55.6
Atru.chr4.2026 Acer truncatum HOM05D001676 ORTHO05D001539 3.4e-40 169.1 177 58.8
Gohir.D02G046100 Gossypium hirsutum HOM05D001676 ORTHO05D001539 3.4e-40 169.1 197 52.8
MD13G1215700 Malus domestica HOM05D001676 ORTHO05D001539 3.4e-40 169.1 181 62.4
Potri.008G168300 Populus trichocarpa HOM05D001676 ORTHO05D001539 3.4e-40 169.1 180 58.3
RcHm_v2.0_Chr4g0393911 Rosa chinensis HOM05D001676 ORTHO05D001539 7.6e-40 167.9 195 59.5
Dinv27064 Davidia involucrata HOM05D001676 ORTHO05D001539 1.0e-39 167.5 186 55.4
FAN12G4001 Fragaria x ananassa HOM05D001676 ORTHO05D001539 1.0e-39 167.5 178 59.6
TAR362G0282 Trochodendron aralioides HOM05D001676 ORTHO05D001539 1.3e-39 167.2 196 55.6
arahy.Tifrunner.gnm1.ann1.MJS5SD Arachis hypogaea HOM05D001676 ORTHO05D001539 1.7e-39 166.8 197 58.9
Gohir.A02G040000 Gossypium hirsutum HOM05D001676 ORTHO05D001539 1.7e-39 166.8 197 53.3
CANSAT78G2335 Cannabis sativa HOM05D001676 ORTHO05D001539 5.0e-39 165.2 181 58.0
FAN22G0824 Fragaria x ananassa HOM05D001676 ORTHO05D001539 1.1e-38 164.1 178 59.0
FAN17G1280 Fragaria x ananassa HOM05D001676 ORTHO05D001539 1.4e-38 163.7 176 59.1
Duzib212G0588 Durio zibethinus HOM05D001676 ORTHO05D001539 2.5e-38 162.9 195 53.3
Gorai.006G252900 Gossypium raimondii HOM05D001676 ORTHO05D001539 4.2e-38 162.2 194 54.1
Cpa.g.sc380.6 Carica papaya HOM05D001676 ORTHO05D001539 5.5e-38 161.8 178 59.0
Nn1g02892 Nelumbo nucifera HOM05D001676 ORTHO05D001539 5.5e-38 161.8 208 55.3
Gohir.D09G230200 Gossypium hirsutum HOM05D001676 ORTHO05D001539 7.1e-38 161.4 194 54.1
CSS0010928 Camellia sinensis var. sinensis HOM05D001676 ORTHO05D001539 9.3e-38 161.0 197 56.3
Sed0010483 Sechium edule HOM05D001676 ORTHO05D001539 4.6e-37 158.7 192 55.2
Cc03_g05670 Coffea canephora HOM05D001676 ORTHO05D001539 3.9e-36 155.6 169 56.2
Actinidia35795 Actinidia chinensis HOM05D001676 ORTHO05D001539 1.1e-35 154.1 194 56.7
Actinidia20816 Actinidia chinensis HOM05D001676 ORTHO05D001539 1.6e-34 150.2 196 55.6
MELO3C023009.2 Cucumis melo HOM05D001676 ORTHO05D001539 1.6e-34 150.2 172 58.1
VMungo0720G2815 Vigna mungo HOM05D001676 ORTHO05D001539 2.8e-34 149.4 153 58.8
Hund11899 Selenicereus undatus HOM05D001676 ORTHO05D001539 3.7e-34 149.1 170 53.5
Eucgr.H00149 Eucalyptus grandis HOM05D001676 ORTHO05D001539 4.8e-34 148.7 165 58.2
SalBow3G4141 Salvia bowleyana HOM05D001676 ORTHO05D001539 8.2e-34 147.9 192 51.6
Haze_11401 Corylus avellana HOM05D001676 ORTHO05D001539 5.3e-33 145.2 169 55.6
TPR.G10081 Trifolium pratense HOM05D001676 ORTHO05D001539 5.3e-33 145.2 79 98.7
MBI10_g13802_MAGBIO Magnolia biondii HOM05D001676 ORTHO05D001539 6.9e-33 144.8 196 52.0
ClCG06G007080 Citrullus lanatus HOM05D001676 ORTHO05D001539 1.5e-32 143.7 186 52.2
Rhsim04G0177100 Rhododendron simsii HOM05D001676 ORTHO05D001539 2.0e-32 143.3 188 52.7
PGR004G1623 Punica granatum HOM05D001676 ORTHO05D001539 4.5e-32 142.1 186 51.6
Oeu028209.2 Olea europaea HOM05D001676 ORTHO05D001539 5.9e-32 141.7 195 52.3
PSO210G1446 Papaver somniferum HOM05D001676 ORTHO05D001539 1.4e-30 137.1 168 53.0
Aqoxy5G00197 Aquilegia oxysepala HOM05D001676 ORTHO05D001539 2.5e-30 136.3 191 50.3
MBI07_g31098_MAGBIO Magnolia biondii HOM05D001676 ORTHO05D001539 5.5e-30 135.2 195 47.2
Solyc09g090270.3 Solanum lycopersicum HOM05D001676 ORTHO05D001539 2.7e-29 132.9 159 52.2
Oeu005088.4 Olea europaea HOM05D001676 ORTHO05D001539 3.6e-29 132.5 193 47.7
vmacro08509 Vaccinium macrocarpon HOM05D001676 ORTHO05D001539 3.6e-29 132.5 168 50.6
AUR62002154 Chenopodium quinoa HOM05D001676 ORTHO05D001539 1.0e-28 131.0 192 45.3
PSO832G0756 Papaver somniferum HOM05D001676 ORTHO05D001539 1.8e-28 130.2 168 51.8
Nitab4.5_0000778g0070 Nicotiana tabacum HOM05D001676 ORTHO05D001539 3.0e-28 129.4 141 53.9
Sopen09g033170 Solanum pennellii HOM05D001676 ORTHO05D001539 3.0e-28 129.4 159 52.2
PGSC0003DMG400017216 Solanum tuberosum HOM05D001676 ORTHO05D001539 3.0e-28 129.4 159 50.9
EL10Ac3g04990 Beta vulgaris HOM05D001676 ORTHO05D001539 5.1e-28 128.6 188 44.7
COL.COLO4_15893 Corchorus olitorius HOM05D001676 ORTHO05D001539 6.7e-28 128.3 151 51.0
ECA233G1832 Erigeron canadensis HOM05D001676 ORTHO05D001539 8.8e-28 127.9 194 49.0
AUR62015553 Chenopodium quinoa HOM05D001676 ORTHO05D001539 2.2e-26 123.2 192 43.2
Peaxi162Scf00041g02416 Petunia axillaris HOM05D001676 ORTHO05D001539 3.7e-26 122.5 159 50.9
Sabra08G0128300 Salix brachista HOM05D001676 ORTHO05D001539 3.7e-26 122.5 138 50.0
FvH4_4g03880 Fragaria vesca HOM05D001676 ORTHO05D001539 4.8e-26 122.1 135 56.3
MSTRG.24670 Avicennia marina HOM05D001676 ORTHO05D001539 6.3e-26 121.7 168 48.2
PGSC0003DMG400005037 Solanum tuberosum HOM05D001676 ORTHO05D001539 1.4e-25 120.6 135 51.9
Gohir.A09G229166 Gossypium hirsutum HOM05D001676 ORTHO05D001539 1.8e-25 120.2 155 52.3
CAN.G220.6 Capsicum annuum HOM05D001676 ORTHO05D001539 2.4e-25 119.8 159 49.1
Gorai.005G050900 Gossypium raimondii HOM05D001676 ORTHO05D001539 2.0e-24 116.7 148 47.3
Sp2g08120 Schrenkiella parvula HOM05D001676 ORTHO05D001539 2.6e-24 116.3 192 44.8
Carub.0008s0535 Capsella rubella HOM05D001676 ORTHO05D001539 7.7e-24 114.8 195 45.6
THA.LOC104801554 Tarenaya hassleriana HOM05D001676 ORTHO05D001539 7.7e-24 114.8 171 48.5
AT5G43310 Arabidopsis thaliana HOM05D001676 ORTHO05D001539 5.0e-23 112.1 175 46.9
Lj6C633G10 Lonicera japonica HOM05D001676 ORTHO05D001539 8.5e-23 111.3 142 52.1
C07p25900 Brassica napus HOM05D001676 ORTHO05D001539 1.4e-22 110.5 188 44.7
Psat6g244160 Pisum sativum HOM05D001676 ORTHO05D001539 1.4e-22 110.5 116 56.9
ATR0736G045 Amborella trichopoda HOM05D001676 ORTHO05D001539 2.5e-22 109.8 189 45.0
A06p47920 Brassica napus HOM05D001676 ORTHO05D001539 2.5e-22 109.8 188 44.1
BraA06t27662Z Brassica rapa HOM05D001676 ORTHO05D001539 2.5e-22 109.8 188 44.1
AL8G17080 Arabidopsis lyrata HOM05D001676 ORTHO05D001539 5.5e-22 108.6 192 44.8
MSTRG.21919 Avicennia marina HOM05D001676 ORTHO05D001539 1.2e-21 107.5 194 41.2
Rhsim07G0183600 Rhododendron simsii HOM05D001982 ORTHO05D001539 2.1e-21 106.7 173 43.9
BcaC06g31710 Brassica carinata HOM05D001676 ORTHO05D001539 2.7e-21 106.3 186 44.1
CARHR180420 Cardamine hirsuta HOM05D001676 ORTHO05D001539 6.1e-21 105.1 180 45.0
Sc13g0005790 Simmondsia chinensis HOM05D001676 ORTHO05D001539 7.9e-21 104.8 215 36.7
RhsimUnG0080800 Rhododendron simsii HOM05D001676 ORTHO05D001539 2.3e-20 103.2 130 49.2
BcaC06g34663 Brassica carinata HOM05D001676 ORTHO05D001539 5.1e-20 102.1 188 43.1
BolC7t43111H Brassica oleracea HOM05D001676 ORTHO05D001539 5.1e-20 102.1 188 43.1
Lj3C691T9 Lonicera japonica HOM05D001676 ORTHO05D001539 5.1e-20 102.1 182 41.8
Lsat_1_v5_gn_5_73160 Lactuca sativa HOM05D001676 ORTHO05D001539 8.8e-20 101.3 165 48.5
SGA_v2.0_scaffold43G16224 Striga asiatica HOM05D001676 ORTHO05D001539 1.1e-19 100.9 181 40.9
Nitab4.5_0000044g0420 Nicotiana tabacum HOM05D001676 ORTHO05D001539 3.3e-19 99.4 139 44.6
BolC2t10432H Brassica oleracea HOM05D001676 ORTHO05D001539 7.4e-19 98.2 189 42.3
C02p54960 Brassica napus HOM05D001676 ORTHO05D001539 1.7e-18 97.1 189 41.8
Migut.N00283 Erythranthe guttata HOM05D001676 ORTHO05D001539 8.2e-18 94.7 164 40.9
Os03g0861100 Oryza sativa ssp. japonica HOM05D001676 ORTHO05D001539 5.3e-17 92.0 161 41.0
A02p27760 Brassica napus HOM05D001676 ORTHO05D001539 7.0e-17 91.7 184 41.8
BraA02t07817Z Brassica rapa HOM05D001676 ORTHO05D001539 7.0e-17 91.7 184 41.8
BcaB07g30585 Brassica carinata HOM05D001676 ORTHO05D001539 4.5e-16 89.0 182 39.6
DCAR_002314 Daucus carota HOM05D001676 ORTHO05D001539 2.5e-14 83.2 153 41.8
Migut.G00505 Erythranthe guttata HOM05D001676 ORTHO05D001539 1.2e-13 80.9 119 42.9
BcaC03g16572 Brassica carinata HOM05D000411 ORTHO05D001539 9.7e-11 71.2 169 36.7
CDE05G0956 Ceratophyllum demersum HOM05D001676 ORTHO05D001539 2.8e-10 69.7 173 35.8
unitig_0.g2241 Utricularia gibba HOM05D001676 ORTHO05D001539 8.2e-10 68.2 95 48.4
HanXRQChr17g0565931 Helianthus annuus HOM05D001676 ORTHO05D001539 1.8e-09 67.0 166 39.8
Zm00001eb065300 Zea mays HOM05D001676 ORTHO05D001539 1.6e-08 63.9 196 34.7
Lj3A690G34 Lonicera japonica HOM05D001676 ORTHO05D001539 1.0e-07 61.2 69 47.8


User provided reference genes

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