Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G18486 Trifolium pratense HOM05D000034 ORTHO05D000277 2.7e-42 174.9 84 100.0
TPR.G39652 Trifolium pratense HOM05D000034 ORTHO05D000277 4.5e-42 174.1 84 98.8
TPR.G5979 Trifolium pratense HOM05D002233 ORTHO05D002299 1.1e-30 136.3 69 91.3
TPR.G25081 Trifolium pratense HOM05D000034 ORTHO05D000277 2.0e-29 132.1 67 91.0
Lj1g0019892 Lotus japonicus HOM05D000034 ORTHO05D000277 1.1e-27 126.3 82 73.2
Lj5g0001459 Lotus japonicus HOM05D000034 ORTHO05D000277 1.1e-27 126.3 82 73.2
Lj5g0006139 Lotus japonicus HOM05D000034 ORTHO05D000277 1.1e-27 126.3 82 73.2
LjContig00357g0019659 Lotus japonicus HOM05D000034 ORTHO05D000277 3.9e-17 91.3 82 59.8
TWI59G1350 Tripterygium wilfordii HOM05D000034 ORTHO05D000277 8.6e-17 90.1 84 52.4
Lj5g0023821 Lotus japonicus HOM05D000102 ORTHO05D000277 4.3e-16 87.8 82 57.3
FvH4_2g04031 Fragaria vesca HOM05D000034 ORTHO05D000277 4.6e-10 67.8 74 41.9
FvH4_4g09541 Fragaria vesca HOM05D000034 ORTHO05D000277 1.0e-09 66.6 74 40.5
FAN28G0140 Fragaria x ananassa HOM05D002788 ORTHO05D025609 1.0e-09 66.6 80 45.0
FAN28G0483 Fragaria x ananassa HOM05D002788 ORTHO05D025609 1.0e-09 66.6 80 45.0
CANSAT01G2074 Cannabis sativa HOM05D000034 ORTHO05D000277 2.3e-09 65.5 69 44.9
FAN19G1412 Fragaria x ananassa HOM05D002788 ORTHO05D025609 2.3e-09 65.5 77 44.2
Hma1.2p1_0664F.1_g199003 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 2.3e-09 65.5 84 38.1
arahy.Tifrunner.gnm1.ann1.4HXN36 Arachis hypogaea HOM05D001651 ORTHO05D000277 3.9e-09 64.7 80 38.8
Ah.00g001310 Amaranthus hybridus HOM05D000034 ORTHO05D000277 6.6e-09 63.9 67 43.3
Ah.02g122110 Amaranthus hybridus HOM05D000034 ORTHO05D000277 6.6e-09 63.9 67 43.3
Ah.15g094850 Amaranthus hybridus HOM05D000034 ORTHO05D000277 6.6e-09 63.9 67 43.3
FAN16G3514 Fragaria x ananassa HOM05D000034 ORTHO05D000277 6.6e-09 63.9 75 38.7
PGR142G3826 Punica granatum HOM05D000034 ORTHO05D000277 6.6e-09 63.9 69 44.9
arahy.Tifrunner.gnm1.ann1.VKU54N Arachis hypogaea HOM05D001651 ORTHO05D000277 8.7e-09 63.5 78 39.7
arahy.Tifrunner.gnm1.ann1.0QZ25Z Arachis hypogaea HOM05D001651 ORTHO05D000277 1.1e-08 63.2 78 38.5
arahy.Tifrunner.gnm1.ann1.E2D6CJ Arachis hypogaea HOM05D001651 ORTHO05D000277 1.1e-08 63.2 78 38.5
arahy.Tifrunner.gnm1.ann1.Q82TWL Arachis hypogaea HOM05D001651 ORTHO05D000277 1.1e-08 63.2 83 37.3
FvH4_2g07610 Fragaria vesca HOM05D000034 ORTHO05D000277 1.1e-08 63.2 73 39.7
Rhsim05G0015700 Rhododendron simsii HOM05D000034 ORTHO05D000277 1.1e-08 63.2 81 40.7
arahy.Tifrunner.gnm1.ann1.3RQC98 Arachis hypogaea HOM05D001651 ORTHO05D000277 1.5e-08 62.8 78 38.5
Atru.chr2.2599 Acer truncatum HOM05D000034 ORTHO05D000277 1.9e-08 62.4 77 41.6
arahy.Tifrunner.gnm1.ann1.LUU7A8 Arachis hypogaea HOM05D001651 ORTHO05D000277 1.9e-08 62.4 78 38.5
Hma1.2p1_0489F.1_g164000 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 1.9e-08 62.4 84 35.7
RcHm_v2.0_Chr1g0373591 Rosa chinensis HOM05D000034 ORTHO05D000277 2.5e-08 62.0 74 37.8
EL10Ac1g02210 Beta vulgaris HOM05D000034 ORTHO05D000277 3.3e-08 61.6 70 40.0
EL10Ac3g06454 Beta vulgaris HOM05D000034 ORTHO05D000277 3.3e-08 61.6 70 40.0
EL10Ac7g16515 Beta vulgaris HOM05D000034 ORTHO05D000277 3.3e-08 61.6 70 40.0
Atru.chr6.1585 Acer truncatum HOM05D000034 ORTHO05D000277 4.3e-08 61.2 60 46.7
arahy.Tifrunner.gnm1.ann1.CJLK9M Arachis hypogaea HOM05D000034 ORTHO05D000277 4.3e-08 61.2 78 37.2
GSVIVG01022336001 Vitis vinifera HOM05D000034 ORTHO05D000277 5.6e-08 60.8 71 40.8
EL10Ac1g00820 Beta vulgaris HOM05D000034 ORTHO05D000277 7.3e-08 60.5 69 39.1
FAN08G2713 Fragaria x ananassa HOM05D000034 ORTHO05D000277 7.3e-08 60.5 77 37.7
arahy.Tifrunner.gnm1.ann1.PCHE3H Arachis hypogaea HOM05D001651 ORTHO05D000277 9.6e-08 60.1 78 37.2
Rhsim01G0279200 Rhododendron simsii HOM05D000034 ORTHO05D000037 9.6e-08 60.1 69 46.4
Rhsim03G0059900 Rhododendron simsii HOM05D000034 ORTHO05D000037 9.6e-08 60.1 69 46.4
RcHm_v2.0_Chr2g0106711 Rosa chinensis HOM05D000034 ORTHO05D025609 9.6e-08 60.1 70 44.3
Atru.chr1.1500 Acer truncatum HOM05D000034 ORTHO05D000037 1.2e-07 59.7 69 40.6
Atru.chr12.1422 Acer truncatum HOM05D000034 ORTHO05D000037 1.2e-07 59.7 69 40.6
arahy.Tifrunner.gnm1.ann1.00E8H2 Arachis hypogaea HOM05D000034 ORTHO05D000037 1.2e-07 59.7 65 43.1
arahy.Tifrunner.gnm1.ann1.5U3795 Arachis hypogaea HOM05D001651 ORTHO05D000277 1.2e-07 59.7 72 38.9
arahy.Tifrunner.gnm1.ann1.JHPI9T Arachis hypogaea HOM05D000034 ORTHO05D000037 1.2e-07 59.7 65 43.1
Atru.chr4.1088 Acer truncatum HOM05D000034 ORTHO05D000037 1.6e-07 59.3 69 40.6
Atru.chr6.616 Acer truncatum HOM05D000034 ORTHO05D000037 1.6e-07 59.3 69 40.6
Ah.06g191350 Amaranthus hybridus HOM05D000034 ORTHO05D000277 1.6e-07 59.3 67 40.3
arahy.Tifrunner.gnm1.ann1.XZ888T Arachis hypogaea HOM05D000034 ORTHO05D000037 1.6e-07 59.3 65 43.1
CSS0033959 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000277 1.6e-07 59.3 63 44.4
FvH4_3g30720 Fragaria vesca HOM05D000034 ORTHO05D000277 1.6e-07 59.3 73 37.0
arahy.Tifrunner.gnm1.ann1.XR7IVT Arachis hypogaea HOM05D000034 ORTHO05D000277 2.1e-07 58.9 65 43.1
FAN20G2200 Fragaria x ananassa HOM05D000034 ORTHO05D000277 2.1e-07 58.9 70 40.0
arahy.Tifrunner.gnm1.ann1.G04LPI Arachis hypogaea HOM05D000034 ORTHO05D000277 2.8e-07 58.5 67 40.3
EL10Ac9g22401 Beta vulgaris HOM05D000034 ORTHO05D000037 2.8e-07 58.5 65 44.6
arahy.Tifrunner.gnm1.ann1.P2C5HI Arachis hypogaea HOM05D000034 ORTHO05D000277 3.6e-07 58.2 65 41.5
Ciclev10006900m.g Citrus clementina HOM05D000034 ORTHO05D000277 3.6e-07 58.2 65 43.1
Dinv04284 Davidia involucrata HOM05D000034 ORTHO05D000277 3.6e-07 58.2 78 38.5
arahy.Tifrunner.gnm1.ann1.QU5ZKR Arachis hypogaea HOM05D000034 ORTHO05D000037 4.7e-07 57.8 63 42.9
EL10Ac8g19887 Beta vulgaris HOM05D000034 ORTHO05D000037 6.2e-07 57.4 67 43.3
DCAR_017700 Daucus carota HOM05D000034 ORTHO05D000277 6.2e-07 57.4 69 46.4
ECA232G0859 Erigeron canadensis HOM05D005071 ORTHO05D006069 6.2e-07 57.4 87 37.9
arahy.Tifrunner.gnm1.ann1.M2TA6F Arachis hypogaea HOM05D000034 ORTHO05D000037 1.1e-06 56.6 65 41.5
Dinv40251 Davidia involucrata HOM05D000034 ORTHO05D000277 1.1e-06 56.6 78 38.5
FvH4_1g29434 Fragaria vesca HOM05D000005 ORTHO05D000239 1.1e-06 56.6 74 35.1
arahy.Tifrunner.gnm1.ann1.JF7ZZS Arachis hypogaea HOM05D000034 ORTHO05D000037 1.4e-06 56.2 65 41.5
arahy.Tifrunner.gnm1.ann1.K6SLTQ Arachis hypogaea HOM05D000034 ORTHO05D000277 1.4e-06 56.2 65 41.5
arahy.Tifrunner.gnm1.ann1.MTH8LG Arachis hypogaea HOM05D000034 ORTHO05D000277 1.4e-06 56.2 65 41.5
EL10Ac4g07654 Beta vulgaris HOM05D000034 ORTHO05D000277 1.4e-06 56.2 67 41.8
Medtr7g094990 Medicago truncatula HOM05D000034 ORTHO05D000277 1.4e-06 56.2 25 100.0
PGR044G2444 Punica granatum HOM05D000034 ORTHO05D000277 1.4e-06 56.2 69 37.7
arahy.Tifrunner.gnm1.ann1.1L5GFL Arachis hypogaea HOM05D000034 ORTHO05D000277 1.8e-06 55.8 67 38.8
arahy.Tifrunner.gnm1.ann1.Z43E0S Arachis hypogaea HOM05D000034 ORTHO05D000277 1.8e-06 55.8 70 40.0
AUR62004373 Chenopodium quinoa HOM05D000034 ORTHO05D000277 1.8e-06 55.8 67 41.8
Lsat_1_v5_gn_3_6061 Lactuca sativa HOM05D000034 ORTHO05D000277 1.8e-06 55.8 85 35.3
RcHm_v2.0_Chr1g0343671 Rosa chinensis HOM05D000034 ORTHO05D000277 1.8e-06 55.8 73 41.1
RcHm_v2.0_Chr5g0072391 Rosa chinensis HOM05D000034 ORTHO05D000277 1.8e-06 55.8 81 38.3
arahy.Tifrunner.gnm1.ann1.58GSYS Arachis hypogaea HOM05D000034 ORTHO05D000037 2.4e-06 55.5 67 41.8
arahy.Tifrunner.gnm1.ann1.69CSDW Arachis hypogaea HOM05D000034 ORTHO05D000037 2.4e-06 55.5 67 41.8
arahy.Tifrunner.gnm1.ann1.D4DCSE Arachis hypogaea HOM05D000034 ORTHO05D000277 2.4e-06 55.5 65 38.5
arahy.Tifrunner.gnm1.ann1.L8W3IU Arachis hypogaea HOM05D000034 ORTHO05D000277 2.4e-06 55.5 65 40.0
arahy.Tifrunner.gnm1.ann1.W414Q0 Arachis hypogaea HOM05D000034 ORTHO05D000277 2.4e-06 55.5 67 41.8
EL10Ac4g08596 Beta vulgaris HOM05D000034 ORTHO05D000277 3.1e-06 55.1 78 41.0
EL10Ac6g15045 Beta vulgaris HOM05D000034 ORTHO05D000277 3.1e-06 55.1 70 37.1
Dinv26538 Davidia involucrata HOM05D000034 ORTHO05D000277 3.1e-06 55.1 72 38.9
arahy.Tifrunner.gnm1.ann1.1N4LYC Arachis hypogaea HOM05D000034 ORTHO05D000277 5.2e-06 54.3 67 40.3
arahy.Tifrunner.gnm1.ann1.355WFF Arachis hypogaea HOM05D000034 ORTHO05D000277 5.2e-06 54.3 65 40.0
EL10Ac4g08431 Beta vulgaris HOM05D000034 ORTHO05D000277 5.2e-06 54.3 78 39.7
Hma1.2p1_0022F.1_g014790 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 5.2e-06 54.3 79 36.7
Hma1.2p1_0165F.1_g073390 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 5.2e-06 54.3 79 36.7
Hma1.2p1_0170F.1_g074960 Hydrangea macrophylla HOM05D000034 ORTHO05D000277 5.2e-06 54.3 69 37.7
Hma1.2p1_0276F.1_g111440 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 5.2e-06 54.3 79 36.7
Hma1.2p1_0286F.1_g113985 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 5.2e-06 54.3 79 36.7
Hma1.2p1_0744F.1_g211850 Hydrangea macrophylla HOM05D000034 ORTHO05D000277 5.2e-06 54.3 69 37.7
arahy.Tifrunner.gnm1.ann1.8SV1M4 Arachis hypogaea HOM05D000034 ORTHO05D000277 6.9e-06 53.9 67 40.3
AUR62025908 Chenopodium quinoa HOM05D000034 ORTHO05D000277 6.9e-06 53.9 67 40.3
Dinv32704 Davidia involucrata HOM05D000034 ORTHO05D000277 6.9e-06 53.9 78 37.2
Hma1.2p1_0317F.1_g123710 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 6.9e-06 53.9 74 33.8
EL10As11g23991 Beta vulgaris HOM05D000034 ORTHO05D000277 9.0e-06 53.5 65 36.9
CANSAT80G1436 Cannabis sativa HOM05D001651 ORTHO05D000277 9.0e-06 53.5 67 35.8
Medtr3g075160 Medicago truncatula HOM05D000034 ORTHO05D000277 9.0e-06 53.5 75 33.3
Zm00001eb029080 Zea mays HOM05D001299 ORTHO05D000277 9.0e-06 53.5 83 33.7


User provided reference genes

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