Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G18466 Trifolium pratense HOM05D005008 ORTHO05D006092 1.4e-72 276.2 139 100.0
TPR.G27448 Trifolium pratense HOM05D005008 ORTHO05D006092 2.1e-36 156.0 81 95.1
Ca_18750_v3 Cicer arietinum L. HOM05D005008 ORTHO05D006092 3.4e-26 122.1 57 96.5
Psat7g129160 Pisum sativum HOM05D005008 ORTHO05D006092 4.6e-23 111.7 57 89.5
TPR.G38259 Trifolium pratense HOM05D005008 ORTHO05D006092 3.9e-22 108.6 54 90.7
Medtr4g084320 Medicago truncatula HOM05D005008 ORTHO05D006092 5.1e-22 108.2 80 71.2
VMungo0251G1441 Vigna mungo HOM05D005008 ORTHO05D006092 9.6e-21 104.0 58 79.3
Solyc06g073900.3 Solanum lycopersicum HOM05D005008 ORTHO05D006092 1.8e-19 99.8 90 63.3
Sopen06g030300 Solanum pennellii HOM05D005008 ORTHO05D006092 1.8e-19 99.8 90 63.3
PGSC0003DMG400005906 Solanum tuberosum HOM05D005008 ORTHO05D006092 1.8e-19 99.8 63 79.4
Phvul.002G096700 Phaseolus vulgaris HOM05D005008 ORTHO05D006092 5.2e-19 98.2 57 77.2
CAN.G1463.18 Capsicum annuum HOM05D005008 ORTHO05D006092 6.8e-19 97.8 64 76.6
Lalb_Chr16g0385131 Lupinus albus HOM05D005008 ORTHO05D006092 1.5e-18 96.7 59 69.5
Nitab4.5_0015902g0010 Nicotiana tabacum HOM05D005008 ORTHO05D006092 1.5e-18 96.7 65 73.8
Cc01_g07910 Coffea canephora HOM05D005008 ORTHO05D006092 2.0e-18 96.3 65 63.1
Glyma.20G018300 Glycine max HOM05D005008 ORTHO05D006092 2.0e-18 96.3 54 75.9
Nitab4.5_0003644g0030 Nicotiana tabacum HOM05D005008 ORTHO05D006092 2.0e-18 96.3 65 69.2
Prupe.6G148300 Prunus persica HOM05D005008 ORTHO05D006092 5.8e-18 94.7 62 69.4
Manes.11G103800 Manihot esculenta HOM05D005008 ORTHO05D006092 9.9e-18 94.0 60 75.0
Peaxi162Scf00098g00148 Petunia axillaris HOM05D005008 ORTHO05D006092 1.3e-17 93.6 92 55.4
CsaV3_1G043620 Cucumis sativus L. HOM05D005008 ORTHO05D006092 1.7e-17 93.2 61 70.5
Sc21g0006720 Simmondsia chinensis HOM05D005008 ORTHO05D006092 2.2e-17 92.8 62 64.5
Peaxi162Scf00717g00217 Petunia axillaris HOM05D005008 ORTHO05D006092 3.8e-17 92.0 70 60.0
PGR083G2197 Punica granatum HOM05D005008 ORTHO05D006092 3.8e-17 92.0 86 51.2
Lj2g0024950 Lotus japonicus HOM05D005008 ORTHO05D006092 4.9e-17 91.7 53 71.7
ClCG03G012390 Citrullus lanatus HOM05D005008 ORTHO05D006092 6.4e-17 91.3 61 70.5
MELO3C015091.2 Cucumis melo HOM05D005008 ORTHO05D006092 6.4e-17 91.3 61 68.9
Solyc11g071790.2 Solanum lycopersicum HOM05D005008 ORTHO05D006092 6.4e-17 91.3 74 62.2
Sopen11g029460 Solanum pennellii HOM05D005008 ORTHO05D006092 6.4e-17 91.3 74 62.2
PGSC0003DMG400002990 Solanum tuberosum HOM05D005008 ORTHO05D006092 6.4e-17 91.3 74 62.2
CiPaw.13G126400 Carya illinoinensis HOM05D005008 ORTHO05D006092 8.4e-17 90.9 56 71.4
Lalb_Chr05g0219631 Lupinus albus HOM05D005008 ORTHO05D006092 8.4e-17 90.9 59 66.1
Nitab4.5_0002426g0070 Nicotiana tabacum HOM05D005008 ORTHO05D006092 8.4e-17 90.9 74 62.2
MD11G1175100 Malus domestica HOM05D005008 ORTHO05D006092 2.4e-16 89.4 61 65.6
THA.LOC104815294 Tarenaya hassleriana HOM05D005008 ORTHO05D006092 3.2e-16 89.0 60 68.3
Nitab4.5_0005569g0020 Nicotiana tabacum HOM05D005008 ORTHO05D006092 7.1e-16 87.8 74 59.5
THA.LOC104808952 Tarenaya hassleriana HOM05D005008 ORTHO05D006092 7.1e-16 87.8 93 48.4
Dinv18863 Davidia involucrata HOM05D005008 ORTHO05D006092 9.3e-16 87.4 85 51.8
MD03G1160100 Malus domestica HOM05D005008 ORTHO05D006092 9.3e-16 87.4 62 61.3
Rhsim13G0198500 Rhododendron simsii HOM05D005008 ORTHO05D006092 1.2e-15 87.0 63 65.1
Hund18808 Selenicereus undatus HOM05D005008 ORTHO05D006092 1.2e-15 87.0 62 61.3
RcHm_v2.0_Chr5g0049161 Rosa chinensis HOM05D005008 ORTHO05D006092 1.6e-15 86.7 48 75.0
Sabra09G0000700 Salix brachista HOM05D005008 ORTHO05D006092 2.1e-15 86.3 56 64.3
Atru.chr3.3067 Acer truncatum HOM05D005008 ORTHO05D006092 2.7e-15 85.9 62 59.7
CARHR008370 Cardamine hirsuta HOM05D005008 ORTHO05D006092 3.5e-15 85.5 50 72.0
Ciclev10029485m.g Citrus clementina HOM05D005008 ORTHO05D006092 7.8e-15 84.3 64 59.4
CSS0002518 Camellia sinensis var. sinensis HOM05D005008 ORTHO05D006092 1.3e-14 83.6 58 65.5
Dinv21730 Davidia involucrata HOM05D005008 ORTHO05D006092 1.3e-14 83.6 75 53.3
Potri.009G001100 Populus trichocarpa HOM05D005008 ORTHO05D006092 2.3e-14 82.8 56 62.5
arahy.Tifrunner.gnm1.ann1.67HGNM Arachis hypogaea HOM05D005008 ORTHO05D006092 3.9e-14 82.0 50 66.0
arahy.Tifrunner.gnm1.ann1.L1LZAQ Arachis hypogaea HOM05D005008 ORTHO05D006092 3.9e-14 82.0 50 66.0
Sp1g07130 Schrenkiella parvula HOM05D005008 ORTHO05D006092 3.9e-14 82.0 49 67.3
Sc12g0000410 Simmondsia chinensis HOM05D005008 ORTHO05D006092 3.9e-14 82.0 57 64.9
Sed0018780 Sechium edule HOM05D005008 ORTHO05D006092 5.1e-14 81.6 59 62.7
AL1G18910 Arabidopsis lyrata HOM05D005008 ORTHO05D006092 6.6e-14 81.3 56 64.3
arahy.Tifrunner.gnm1.ann1.LRUS99 Arachis hypogaea HOM05D005008 ORTHO05D006092 6.6e-14 81.3 50 66.0
Eucgr.J00592 Eucalyptus grandis HOM05D005008 ORTHO05D006092 8.7e-14 80.9 86 46.5
RcHm_v2.0_Chr7g0230441 Rosa chinensis HOM05D005008 ORTHO05D006092 8.7e-14 80.9 64 57.8
AT1G08480 Arabidopsis thaliana HOM05D005008 ORTHO05D006092 1.1e-13 80.5 56 66.1
AUR62001577 Chenopodium quinoa HOM05D005008 ORTHO05D006092 1.5e-13 80.1 54 61.1
Thhalv10019305m.g Eutrema salsugineum HOM05D005008 ORTHO05D006092 1.5e-13 80.1 49 65.3
Lsat_1_v5_gn_6_104840 Lactuca sativa HOM05D005008 ORTHO05D006092 1.9e-13 79.7 70 51.4
MSTRG.21002 Avicennia marina HOM05D005008 ORTHO05D006092 2.5e-13 79.3 89 47.2
EL10Ac7g16268 Beta vulgaris HOM05D005008 ORTHO05D006092 2.5e-13 79.3 52 61.5
A06p05480 Brassica napus HOM05D005008 ORTHO05D006092 2.5e-13 79.3 52 67.3
BraA06t23756Z Brassica rapa HOM05D005008 ORTHO05D006092 2.5e-13 79.3 52 67.3
Carub.0001s0784 Capsella rubella HOM05D005008 ORTHO05D006092 2.5e-13 79.3 56 64.3
Cfa010212 Carpinus fangiana HOM05D005008 ORTHO05D006092 3.3e-13 79.0 61 63.9
Gohir.A08G007400 Gossypium hirsutum HOM05D005008 ORTHO05D006092 3.3e-13 79.0 61 60.7
QL02p021765 Quercus lobata HOM05D005008 ORTHO05D006092 3.3e-13 79.0 56 66.1
BcaB07g34092 Brassica carinata HOM05D005008 ORTHO05D006092 4.3e-13 78.6 52 69.2
C05p06590 Brassica napus HOM05D005008 ORTHO05D006092 4.3e-13 78.6 52 69.2
BolC5t29419H Brassica oleracea HOM05D005008 ORTHO05D006092 4.3e-13 78.6 52 69.2
SGA_v2.0_scaffold114G31950 Striga asiatica HOM05D005008 ORTHO05D006092 5.6e-13 78.2 62 58.1
Thecc.09G268300 Theobroma cacao HOM05D005008 ORTHO05D006092 5.6e-13 78.2 59 61.0
MSTRG.18800 Avicennia marina HOM05D005008 ORTHO05D006092 7.3e-13 77.8 88 47.7
AUR62020205 Chenopodium quinoa HOM05D005008 ORTHO05D006092 7.3e-13 77.8 74 48.6
Gohir.D08G017500 Gossypium hirsutum HOM05D005008 ORTHO05D006092 7.3e-13 77.8 60 61.7
Gorai.004G011900 Gossypium raimondii HOM05D005008 ORTHO05D006092 7.3e-13 77.8 60 61.7
Oeu031444.1 Olea europaea HOM05D005008 ORTHO05D006092 9.6e-13 77.4 56 60.7
GSVIVG01028464001 Vitis vinifera HOM05D005008 ORTHO05D006092 9.6e-13 77.4 58 56.9
arahy.Tifrunner.gnm1.ann1.0IE2SQ Arachis hypogaea HOM05D005008 ORTHO05D006092 1.3e-12 77.0 50 64.0
BcaB03g13330 Brassica carinata HOM05D005008 ORTHO05D006092 1.6e-12 76.6 52 63.5
Duzib170G0524 Durio zibethinus HOM05D005008 ORTHO05D006092 1.6e-12 76.6 59 61.0
unitig_899.g15386 Utricularia gibba HOM05D005008 ORTHO05D006092 2.1e-12 76.3 81 45.7
Migut.D02371 Erythranthe guttata HOM05D005008 ORTHO05D006092 2.8e-12 75.9 51 62.7
Migut.D02374 Erythranthe guttata HOM05D005008 ORTHO05D006092 2.8e-12 75.9 51 62.7
unitig_746.g26601 Utricularia gibba HOM05D005008 ORTHO05D006092 3.6e-12 75.5 63 54.0
Hma1.2p1_0101F.1_g049710 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 6.2e-12 74.7 57 63.2
TAR628G1298 Trochodendron aralioides HOM05D005008 ORTHO05D006092 6.2e-12 74.7 58 58.6
Aa31LG2G20300 Aethionema arabicum HOM05D005008 ORTHO05D006092 8.1e-12 74.3 45 73.3
Ah.01g003330 Amaranthus hybridus HOM05D005008 ORTHO05D006092 8.1e-12 74.3 47 61.7
A08p35120 Brassica napus HOM05D005008 ORTHO05D006092 1.4e-11 73.6 52 61.5
BraA08t35421Z Brassica rapa HOM05D005008 ORTHO05D006092 1.4e-11 73.6 52 61.5
Aqoxy7G02777 Aquilegia oxysepala HOM05D005008 ORTHO05D006092 1.8e-11 73.2 49 63.3
COL.COLO4_25364 Corchorus olitorius HOM05D005008 ORTHO05D006092 1.8e-11 73.2 51 62.7
vmacro04058 Vaccinium macrocarpon HOM05D005008 ORTHO05D006092 1.8e-11 73.2 58 65.5
Duzib168G2291 Durio zibethinus HOM05D005008 ORTHO05D006092 4.0e-11 72.0 59 57.6
HanXRQChr05g0163331 Helianthus annuus HOM05D005008 ORTHO05D006092 4.0e-11 72.0 57 50.9
Aa31LG5G14080 Aethionema arabicum HOM05D005008 ORTHO05D006092 6.9e-11 71.2 47 61.7
FAN04G2231 Fragaria x ananassa HOM05D005008 ORTHO05D006092 9.0e-11 70.9 46 65.2
FAN13G1722 Fragaria x ananassa HOM05D005008 ORTHO05D006092 9.0e-11 70.9 46 65.2
FAN08G1342 Fragaria x ananassa HOM05D005008 ORTHO05D006092 1.5e-10 70.1 46 65.2
BcaC07g38394 Brassica carinata HOM05D005008 ORTHO05D006092 2.0e-10 69.7 52 59.6
C08p11520 Brassica napus HOM05D005008 ORTHO05D006092 2.0e-10 69.7 52 59.6
BolC8t48832H Brassica oleracea HOM05D005008 ORTHO05D006092 2.0e-10 69.7 52 59.6
ECA246G4934 Erigeron canadensis HOM05D005008 ORTHO05D006092 2.0e-10 69.7 85 44.7
ATR1136G073 Amborella trichopoda HOM05D005008 ORTHO05D006092 3.4e-10 68.9 49 57.1
FAN18G0191 Fragaria x ananassa HOM05D005008 ORTHO05D006092 4.4e-10 68.6 46 65.2
Sed0017043 Sechium edule HOM05D005008 ORTHO05D006092 2.2e-09 66.2 61 47.5
Lj2E351T1 Lonicera japonica HOM05D005008 ORTHO05D006092 1.4e-08 63.5 39 66.7
CDE04G3167 Ceratophyllum demersum HOM05D005008 ORTHO05D006092 3.2e-08 62.4 63 42.9
CDE05G0523 Ceratophyllum demersum HOM05D005008 ORTHO05D006092 9.3e-08 60.8 63 41.3
Hma1.2p1_1951F.1_g308770 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 9.3e-08 60.8 55 54.5
Hma1.2p1_1258F.1_g270900 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 1.2e-07 60.5 54 55.6
MBI17_g21976_MAGBIO Magnolia biondii HOM05D000527 ORTHO05D000559 1.2e-07 60.5 45 57.8
PSO325G0018 Papaver somniferum HOM05D005008 ORTHO05D006092 2.7e-07 59.3 51 52.9
SEGI_09212 Sequoiadendron giganteum HOM05D005008 ORTHO05D006092 2.7e-07 59.3 58 43.1
Os08g0112800 Oryza sativa ssp. japonica HOM05D005008 ORTHO05D006092 6.0e-07 58.2 47 51.1
MBI17_g21974_MAGBIO Magnolia biondii HOM05D005008 ORTHO05D006092 7.9e-07 57.8 46 52.2
PSO144G0132 Papaver somniferum HOM05D005008 ORTHO05D006092 7.9e-07 57.8 51 52.9
TWI31G0222 Tripterygium wilfordii HOM05D005008 ORTHO05D006092 1.0e-06 57.4 45 60.0
Zm00001eb173990 Zea mays HOM05D005008 ORTHO05D006092 1.3e-06 57.0 48 47.9
FvH4_3g26740 Fragaria vesca HOM05D005008 ORTHO05D006092 3.0e-06 55.8 38 60.5
Zm00001eb260600 Zea mays HOM05D005008 ORTHO05D006092 3.9e-06 55.5 48 45.8
DCAR_021985 Daucus carota HOM05D005008 ORTHO05D006092 5.1e-06 55.1 88 45.5


User provided reference genes

Program Settings