Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G18382 Trifolium pratense HOM05D008500 ORTHO05D005299 3.4e-33 144.4 73 100.0
Psat1g030680 Pisum sativum HOM05D008500 ORTHO05D005299 1.4e-23 112.5 70 81.4
Medtr6g071040 Medicago truncatula HOM05D008500 ORTHO05D005299 2.4e-23 111.7 66 86.4
Glyma.07G104300 Glycine max HOM05D008500 ORTHO05D005299 5.9e-22 107.1 63 82.5
Glyma.09G173300 Glycine max HOM05D008500 ORTHO05D005299 5.9e-22 107.1 66 80.3
Phvul.004G148400 Phaseolus vulgaris HOM05D008500 ORTHO05D005299 2.3e-21 105.1 73 74.0
VMungo0464G1302 Vigna mungo HOM05D008500 ORTHO05D005299 6.6e-21 103.6 71 76.1
Lalb_Chr16g0386911 Lupinus albus HOM05D008500 ORTHO05D005299 5.2e-18 94.0 66 74.2
Lalb_Chr14g0370691 Lupinus albus HOM05D008500 ORTHO05D005299 1.2e-17 92.8 67 74.6
FAN04G2293 Fragaria x ananassa HOM05D008500 ORTHO05D005299 3.4e-17 91.3 73 64.4
FvH4_5g17640 Fragaria vesca HOM05D008500 ORTHO05D005299 4.4e-17 90.9 71 63.4
FAN08G2086 Fragaria x ananassa HOM05D008500 ORTHO05D005299 4.4e-17 90.9 71 63.4
FAN18G0107 Fragaria x ananassa HOM05D008500 ORTHO05D005299 4.4e-17 90.9 71 63.4
arahy.Tifrunner.gnm1.ann1.J4XL7B Arachis hypogaea HOM05D008500 ORTHO05D005299 5.7e-17 90.5 71 73.2
arahy.Tifrunner.gnm1.ann1.B8M078 Arachis hypogaea HOM05D008500 ORTHO05D005299 7.5e-17 90.1 71 71.8
FAN13G1653 Fragaria x ananassa HOM05D008500 ORTHO05D005299 9.8e-17 89.7 71 63.4
Lalb_Chr05g0221531 Lupinus albus HOM05D008500 ORTHO05D005299 1.3e-16 89.4 62 69.4
RcHm_v2.0_Chr7g0178031 Rosa chinensis HOM05D008500 ORTHO05D005299 2.2e-16 88.6 71 63.4
QL10p031374 Quercus lobata HOM05D008500 ORTHO05D005299 3.2e-15 84.7 71 62.0
CiPaw.15G146300 Carya illinoinensis HOM05D008500 ORTHO05D005299 1.0e-13 79.7 60 68.3
Duzib248G0390 Durio zibethinus HOM05D007313 ORTHO05D005299 3.9e-13 77.8 60 66.7
Manes.06G003500 Manihot esculenta HOM05D008500 ORTHO05D005299 5.0e-13 77.4 67 64.2
Duzib268G0019 Durio zibethinus HOM05D007313 ORTHO05D005299 6.6e-13 77.0 60 65.0
Gohir.A03G114900 Gossypium hirsutum HOM05D007313 ORTHO05D005299 6.6e-13 77.0 58 69.0
Gohir.D02G140300 Gossypium hirsutum HOM05D007313 ORTHO05D005299 6.6e-13 77.0 58 69.0
Gorai.005G156500 Gossypium raimondii HOM05D007313 ORTHO05D005299 6.6e-13 77.0 58 69.0
PGR044G0774 Punica granatum HOM05D008500 ORTHO05D005299 8.6e-13 76.6 56 62.5
Sed0027993 Sechium edule HOM05D008500 ORTHO05D005299 1.1e-12 76.3 55 65.5
MELO3C002147.2 Cucumis melo HOM05D008500 ORTHO05D005299 1.5e-12 75.9 70 60.0
Thecc.03G061000 Theobroma cacao HOM05D008500 ORTHO05D005299 1.9e-12 75.5 73 57.5
Manes.14G157100 Manihot esculenta HOM05D008500 ORTHO05D005299 2.5e-12 75.1 59 62.7
Haze_18904 Corylus avellana HOM05D008500 ORTHO05D005299 3.3e-12 74.7 74 54.1
Haze_18910 Corylus avellana HOM05D008500 ORTHO05D005299 3.3e-12 74.7 74 54.1
Lalb_Chr24g0398121 Lupinus albus HOM05D008500 ORTHO05D005299 3.3e-12 74.7 62 67.7
Prupe.5G236200 Prunus persica HOM05D008500 ORTHO05D005299 4.3e-12 74.3 59 64.4
ClCG04G010470 Citrullus lanatus HOM05D008500 ORTHO05D005299 5.6e-12 73.9 55 69.1
MBI19_g22070_MAGBIO Magnolia biondii HOM05D008500 ORTHO05D005299 5.6e-12 73.9 75 60.0
Cfa020630 Carpinus fangiana HOM05D008500 ORTHO05D005299 7.3e-12 73.6 75 53.3
COL.COLO4_16580 Corchorus olitorius HOM05D007313 ORTHO05D005299 7.3e-12 73.6 58 63.8
Cpa.g.sc3.366 Carica papaya HOM05D008500 ORTHO05D005299 9.5e-12 73.2 74 55.4
Duzib205G0189 Durio zibethinus HOM05D008500 ORTHO05D005299 9.5e-12 73.2 54 68.5
Gohir.A01G147300 Gossypium hirsutum HOM05D007313 ORTHO05D005299 9.5e-12 73.2 70 58.6
Gohir.D01G140300 Gossypium hirsutum HOM05D007313 ORTHO05D005299 9.5e-12 73.2 70 58.6
Gorai.002G172500 Gossypium raimondii HOM05D007313 ORTHO05D005299 9.5e-12 73.2 70 58.6
Thecc.02G291900 Theobroma cacao HOM05D007313 ORTHO05D005299 9.5e-12 73.2 58 65.5
Nn4g24351 Nelumbo nucifera HOM05D008500 ORTHO05D005299 1.6e-11 72.4 59 66.1
Sabra15G0028800 Salix brachista HOM05D008500 ORTHO05D005299 2.1e-11 72.0 67 61.2
TAR629G3106 Trochodendron aralioides HOM05D007313 ORTHO05D005299 2.8e-11 71.6 72 58.3
CsaV3_1G007310 Cucumis sativus L. HOM05D008500 ORTHO05D005299 3.6e-11 71.2 53 66.0
Potri.012G044001 Populus trichocarpa HOM05D008500 ORTHO05D005299 6.1e-11 70.5 64 60.9
Sabra12G0030900 Salix brachista HOM05D008500 ORTHO05D005299 6.1e-11 70.5 64 57.8
Potri.015G034800 Populus trichocarpa HOM05D008500 ORTHO05D005299 8.0e-11 70.1 65 60.0
TAR371G1237 Trochodendron aralioides HOM05D008500 ORTHO05D005299 8.0e-11 70.1 66 59.1
TAR371G0465 Trochodendron aralioides HOM05D008500 ORTHO05D005299 1.0e-10 69.7 66 59.1
Gohir.D12G270900 Gossypium hirsutum HOM05D008500 ORTHO05D005299 1.4e-10 69.3 71 62.0
Dinv10480 Davidia involucrata HOM05D007313 ORTHO05D005299 3.1e-10 68.2 58 63.8
Gorai.008G291300 Gossypium raimondii HOM05D008500 ORTHO05D005299 5.2e-10 67.4 71 60.6
Gohir.A12G270500 Gossypium hirsutum HOM05D008500 ORTHO05D005299 6.8e-10 67.0 69 60.9
Rhsim09G0090300 Rhododendron simsii HOM05D007313 ORTHO05D005299 6.8e-10 67.0 63 58.7
Nn3g18353 Nelumbo nucifera HOM05D008500 ORTHO05D005299 8.9e-10 66.6 60 61.7
Eucgr.K02282 Eucalyptus grandis HOM05D008500 ORTHO05D005299 1.5e-09 65.9 60 61.7
CSS0045507 Camellia sinensis var. sinensis HOM05D007313 ORTHO05D005299 2.0e-09 65.5 68 55.9
Manes.15G133700 Manihot esculenta HOM05D007313 ORTHO05D005299 1.3e-08 62.8 65 53.8
Atru.chr11.945 Acer truncatum HOM05D007313 ORTHO05D005299 2.2e-08 62.0 59 52.5
CSS0007506 Camellia sinensis var. sinensis HOM05D007313 ORTHO05D005299 2.2e-08 62.0 68 55.9
Manes.17G083600 Manihot esculenta HOM05D007313 ORTHO05D005299 2.9e-08 61.6 71 49.3
Sed0007445 Sechium edule HOM05D008500 ORTHO05D005299 2.9e-08 61.6 52 63.5
DCAR_023578 Daucus carota HOM05D007313 ORTHO05D005299 4.9e-08 60.8 72 50.0
Migut.E00472 Erythranthe guttata HOM05D007313 ORTHO05D005299 4.9e-08 60.8 77 50.6
SalBow2G1257 Salvia bowleyana HOM05D007313 ORTHO05D005299 4.9e-08 60.8 67 49.3
BcaB03g15385 Brassica carinata HOM05D007313 ORTHO05D005299 6.4e-08 60.5 66 53.0
Cfa015015 Carpinus fangiana HOM05D007313 ORTHO05D005299 6.4e-08 60.5 61 55.7
AT1G67920 Arabidopsis thaliana HOM05D007313 ORTHO05D005299 8.3e-08 60.1 67 53.7
CARHR060560 Cardamine hirsuta HOM05D007313 ORTHO05D005299 8.3e-08 60.1 67 53.7
DCAR_026801 Daucus carota HOM05D007313 ORTHO05D005299 8.3e-08 60.1 64 57.8
Carub.0002s1441 Capsella rubella HOM05D007313 ORTHO05D005299 1.1e-07 59.7 65 55.4
AL2G26720 Arabidopsis lyrata HOM05D007313 ORTHO05D005299 1.9e-07 58.9 67 52.2
Aa31LG7G9440 Aethionema arabicum HOM05D007313 ORTHO05D005299 2.4e-07 58.5 54 63.0
Potri.008G134100 Populus trichocarpa HOM05D007313 ORTHO05D005299 2.4e-07 58.5 59 54.2
BcaC08g46017 Brassica carinata HOM05D007313 ORTHO05D005299 3.2e-07 58.2 66 54.5
A07p32280 Brassica napus HOM05D007313 ORTHO05D005299 3.2e-07 58.2 66 54.5
A07p34460 Brassica napus HOM05D007313 ORTHO05D005299 3.2e-07 58.2 69 52.2
C06p38120 Brassica napus HOM05D007313 ORTHO05D005299 3.2e-07 58.2 66 54.5
BolC6t38909H Brassica oleracea HOM05D007313 ORTHO05D005299 3.2e-07 58.2 66 54.5
BraA07t30853Z Brassica rapa HOM05D007313 ORTHO05D005299 3.2e-07 58.2 66 54.5
Eucgr.H00551 Eucalyptus grandis HOM05D008500 ORTHO05D005299 3.2e-07 58.2 65 52.3
THA.LOC104825566 Tarenaya hassleriana HOM05D007313 ORTHO05D005299 4.1e-07 57.8 58 55.2
BcaB03g15149 Brassica carinata HOM05D007313 ORTHO05D005299 5.4e-07 57.4 69 52.2
Sp5g22920 Schrenkiella parvula HOM05D007313 ORTHO05D005299 5.4e-07 57.4 59 57.6
Potri.010G107200 Populus trichocarpa HOM05D007313 ORTHO05D005299 7.0e-07 57.0 59 55.9
Cpa.g.sc2.206 Carica papaya HOM05D007313 ORTHO05D005299 9.2e-07 56.6 66 57.6
Lsat_1_v5_gn_8_46180 Lactuca sativa HOM05D007313 ORTHO05D005299 9.2e-07 56.6 58 58.6
BcaC08g46215 Brassica carinata HOM05D007313 ORTHO05D005299 1.2e-06 56.2 67 52.2
BolC6t39221H Brassica oleracea HOM05D007313 ORTHO05D005299 1.2e-06 56.2 67 52.2
BraA07t31073Z Brassica rapa HOM05D007313 ORTHO05D005299 1.2e-06 56.2 69 50.7
Nitab4.5_0010904g0010 Nicotiana tabacum HOM05D013191 ORTHO05D015720 1.2e-06 56.2 60 60.0
QL03p035637 Quercus lobata HOM05D007313 ORTHO05D005299 1.2e-06 56.2 54 55.6
A02p14560 Brassica napus HOM05D007313 ORTHO05D005299 2.0e-06 55.5 59 55.9
BraA02t06526Z Brassica rapa HOM05D007313 ORTHO05D005299 2.0e-06 55.5 59 55.9
Thhalv10019740m.g Eutrema salsugineum HOM05D007313 ORTHO05D005299 2.0e-06 55.5 67 50.7
ATR0753G095 Amborella trichopoda HOM05D008500 ORTHO05D005299 2.7e-06 55.1 78 46.2
CARHR026470 Cardamine hirsuta HOM05D007313 ORTHO05D005299 3.5e-06 54.7 56 62.5
BcaB03g12049 Brassica carinata HOM05D007313 ORTHO05D005299 4.6e-06 54.3 56 60.7
Prupe.1G332700 Prunus persica HOM05D007313 ORTHO05D005299 4.6e-06 54.3 60 53.3
BcaB05g24323 Brassica carinata HOM05D007313 ORTHO05D005299 6.0e-06 53.9 59 54.2
MBI13_g37857_MAGBIO Magnolia biondii HOM05D008500 ORTHO05D005299 6.0e-06 53.9 62 51.6
BcaC03g14888 Brassica carinata HOM05D007313 ORTHO05D005299 7.8e-06 53.5 59 52.5
C02p23620 Brassica napus HOM05D007313 ORTHO05D005299 7.8e-06 53.5 59 52.5
BolC2t08492H Brassica oleracea HOM05D007313 ORTHO05D005299 7.8e-06 53.5 59 52.5
Ciclev10017248m.g Citrus clementina HOM05D007313 ORTHO05D005299 7.8e-06 53.5 61 57.4
Nitab4.5_0001841g0120 Nicotiana tabacum HOM05D013191 ORTHO05D015720 7.8e-06 53.5 60 56.7


User provided reference genes

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