Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G1836 Trifolium pratense HOM05D004225 ORTHO05D004728 3.8e-31 137.5 68 100.0
Psat3g087720 Pisum sativum HOM05D004225 ORTHO05D004728 1.3e-10 69.3 55 69.1
Psat3g087760 Pisum sativum HOM05D004225 ORTHO05D004728 1.3e-10 69.3 55 69.1
TPR.G31024 Trifolium pratense HOM05D004225 ORTHO05D004728 1.3e-10 69.3 55 69.1
Dinv11924 Davidia involucrata HOM05D004225 ORTHO05D004728 2.2e-10 68.6 57 63.2
Ciclev10018636m.g Citrus clementina HOM05D004225 ORTHO05D004728 3.7e-10 67.8 57 61.4
Gohir.A11G233000 Gossypium hirsutum HOM05D004225 ORTHO05D004728 3.7e-10 67.8 57 63.2
Gohir.D11G244200 Gossypium hirsutum HOM05D004225 ORTHO05D004728 3.7e-10 67.8 57 63.2
Lalb_Chr14g0364611 Lupinus albus HOM05D004225 ORTHO05D004728 3.7e-10 67.8 55 63.6
Atru.chr2.1407 Acer truncatum HOM05D004225 ORTHO05D004728 4.8e-10 67.4 57 61.4
Glyma.16G038900 Glycine max HOM05D004225 ORTHO05D004728 4.8e-10 67.4 55 65.5
Lj1g0011347 Lotus japonicus HOM05D004225 ORTHO05D004728 4.8e-10 67.4 55 65.5
Phvul.001G113200 Phaseolus vulgaris HOM05D004225 ORTHO05D004728 4.8e-10 67.4 55 65.5
Ca_08286_v3 Cicer arietinum L. HOM05D004225 ORTHO05D004728 6.3e-10 67.0 55 67.3
COL.COLO4_32974 Corchorus olitorius HOM05D004225 ORTHO05D004728 6.3e-10 67.0 55 65.5
DCAR_020662 Daucus carota HOM05D004225 ORTHO05D004728 6.3e-10 67.0 57 63.2
Medtr7g086050 Medicago truncatula HOM05D004225 ORTHO05D004728 6.3e-10 67.0 55 67.3
GSVIVG01022462001 Vitis vinifera HOM05D004225 ORTHO05D004728 8.3e-10 66.6 55 63.6
Thecc.05G246800 Theobroma cacao HOM05D004225 ORTHO05D004728 1.1e-09 66.2 57 61.4
VMungo1383G3152 Vigna mungo HOM05D004225 ORTHO05D004728 1.1e-09 66.2 55 63.6
FAN19G2926 Fragaria x ananassa HOM05D000495 ORTHO05D004728 1.4e-09 65.9 57 61.4
Dinv25097 Davidia involucrata HOM05D004225 ORTHO05D004728 1.8e-09 65.5 57 61.4
Gorai.007G259700 Gossypium raimondii HOM05D004225 ORTHO05D004728 1.8e-09 65.5 57 61.4
MELO3C024751.2 Cucumis melo HOM05D004225 ORTHO05D004728 2.4e-09 65.1 55 63.6
CsaV3_2G035890 Cucumis sativus L. HOM05D004225 ORTHO05D004728 2.4e-09 65.1 55 63.6
arahy.Tifrunner.gnm1.ann1.MX8T8B Arachis hypogaea HOM05D004225 ORTHO05D004728 3.1e-09 64.7 55 63.6
Eucgr.A02119 Eucalyptus grandis HOM05D004225 ORTHO05D004728 3.1e-09 64.7 57 59.6
MD14G1004600 Malus domestica HOM05D004225 ORTHO05D004728 3.1e-09 64.7 55 63.6
FvH4_1g28360 Fragaria vesca HOM05D004225 ORTHO05D004728 4.1e-09 64.3 57 59.6
FAN26G1663 Fragaria x ananassa HOM05D004225 ORTHO05D004728 4.1e-09 64.3 57 59.6
PGR042G0202 Punica granatum HOM05D004225 ORTHO05D004728 4.1e-09 64.3 55 63.6
Actinidia03947 Actinidia chinensis HOM05D004225 ORTHO05D004728 5.4e-09 63.9 55 63.6
Cfa017675 Carpinus fangiana HOM05D004225 ORTHO05D004728 5.4e-09 63.9 55 63.6
Actinidia37791 Actinidia chinensis HOM05D004225 ORTHO05D004728 7.0e-09 63.5 55 61.8
Cpa.g.sc161.2 Carica papaya HOM05D004225 ORTHO05D004728 7.0e-09 63.5 56 58.9
ClCG02G007850 Citrullus lanatus HOM05D004225 ORTHO05D004728 7.0e-09 63.5 46 65.2
Peaxi162Scf00061g00247 Petunia axillaris HOM05D004225 ORTHO05D004728 7.0e-09 63.5 57 61.4
MBI11_g07706_MAGBIO Magnolia biondii HOM05D004225 ORTHO05D004728 9.1e-09 63.2 57 56.1
MD12G1006900 Malus domestica HOM05D004225 ORTHO05D004728 9.1e-09 63.2 55 60.0
Prupe.7G007400 Prunus persica HOM05D004225 ORTHO05D004728 9.1e-09 63.2 55 61.8
arahy.Tifrunner.gnm1.ann1.4I2AVL Arachis hypogaea HOM05D004225 ORTHO05D004728 1.2e-08 62.8 55 61.8
CiPaw.10G126100 Carya illinoinensis HOM05D004225 ORTHO05D004728 1.2e-08 62.8 55 61.8
Haze_20474 Corylus avellana HOM05D004225 ORTHO05D004728 1.2e-08 62.8 55 61.8
Sed0003216 Sechium edule HOM05D004225 ORTHO05D004728 1.2e-08 62.8 35 82.9
Ah.12g059700 Amaranthus hybridus HOM05D004225 ORTHO05D004728 1.6e-08 62.4 55 56.4
ECA238G0084 Erigeron canadensis HOM05D004225 ORTHO05D004728 1.6e-08 62.4 55 60.0
FAN23G2269 Fragaria x ananassa HOM05D004225 ORTHO05D004728 1.6e-08 62.4 55 60.0
Glyma.19G113700 Glycine max HOM05D004225 ORTHO05D004728 1.6e-08 62.4 55 61.8
RcHm_v2.0_Chr3g0496671 Rosa chinensis HOM05D004225 ORTHO05D004728 1.6e-08 62.4 55 60.0
TWI32G0579 Tripterygium wilfordii HOM05D004225 ORTHO05D004728 1.6e-08 62.4 55 60.0
TWI60G0668 Tripterygium wilfordii HOM05D004225 ORTHO05D004728 1.6e-08 62.4 55 60.0
CSS0005542 Camellia sinensis var. sinensis HOM05D004225 ORTHO05D004728 2.0e-08 62.0 57 59.6
CSS0022490 Camellia sinensis var. sinensis HOM05D004225 ORTHO05D004728 2.0e-08 62.0 57 59.6
Nitab4.5_0010528g0010 Nicotiana tabacum HOM05D004225 ORTHO05D004728 2.0e-08 62.0 57 59.6
Sc01g0005150 Simmondsia chinensis HOM05D004225 ORTHO05D004728 2.0e-08 62.0 57 57.9
AUR62039726 Chenopodium quinoa HOM05D004225 ORTHO05D004728 2.7e-08 61.6 57 56.1
Lsat_1_v5_gn_2_103941 Lactuca sativa HOM05D004225 ORTHO05D004728 3.5e-08 61.2 55 60.0
Duzib177G1146 Durio zibethinus HOM05D004225 ORTHO05D004728 4.5e-08 60.8 35 74.3
Gorai.013G194200 Gossypium raimondii HOM05D004225 ORTHO05D004728 4.5e-08 60.8 30 86.7
Lj2A418T70 Lonicera japonica HOM05D004225 ORTHO05D004728 4.5e-08 60.8 57 57.9
QL07p018789 Quercus lobata HOM05D004225 ORTHO05D004728 4.5e-08 60.8 55 60.0
Potri.013G055300 Populus trichocarpa HOM05D004225 ORTHO05D004728 5.9e-08 60.5 55 58.2
Sabra13G0049600 Salix brachista HOM05D004225 ORTHO05D004728 5.9e-08 60.5 55 58.2
Duzib128G0769 Durio zibethinus HOM05D004225 ORTHO05D004728 7.7e-08 60.1 57 56.1
Manes.09G139100 Manihot esculenta HOM05D004225 ORTHO05D004728 7.7e-08 60.1 55 60.0
Rhsim03G0054800 Rhododendron simsii HOM05D004225 ORTHO05D004728 7.7e-08 60.1 57 56.1
AUR62036278 Chenopodium quinoa HOM05D004225 ORTHO05D004728 1.0e-07 59.7 56 55.4
Nitab4.5_0001355g0010 Nicotiana tabacum HOM05D004225 ORTHO05D004728 1.0e-07 59.7 57 57.9
Aqoxy1G00553 Aquilegia oxysepala HOM05D004225 ORTHO05D004728 1.3e-07 59.3 61 50.8
Migut.J00760 Erythranthe guttata HOM05D004225 ORTHO05D004728 1.3e-07 59.3 57 56.1
vmacro07548 Vaccinium macrocarpon HOM05D004225 ORTHO05D004728 1.3e-07 59.3 54 59.3
ATR0697G085 Amborella trichopoda HOM05D004225 ORTHO05D004728 1.7e-07 58.9 56 55.4
EL10Ac5g11767 Beta vulgaris HOM05D004225 ORTHO05D004728 1.7e-07 58.9 56 55.4
PSO339G3394 Papaver somniferum HOM05D004225 ORTHO05D004728 1.7e-07 58.9 63 50.8
PSO384G1703 Papaver somniferum HOM05D004225 ORTHO05D004728 1.7e-07 58.9 63 50.8
QL09p009056 Quercus lobata HOM05D004225 ORTHO05D004728 1.7e-07 58.9 55 60.0
SGA_v2.0_scaffold112G31648 Striga asiatica HOM05D004225 ORTHO05D004728 2.9e-07 58.2 57 54.4
CANSAT78G2348 Cannabis sativa HOM05D004225 ORTHO05D004728 3.8e-07 57.8 55 58.2
unitig_27.g24735 Utricularia gibba HOM05D004225 ORTHO05D004728 3.8e-07 57.8 57 54.4
CARHR077860 Cardamine hirsuta HOM05D004225 ORTHO05D004728 5.0e-07 57.4 69 49.3
Zm00001eb196450 Zea mays HOM05D004225 ORTHO05D004728 6.6e-07 57.0 55 56.4
Zm00001eb300770 Zea mays HOM05D004225 ORTHO05D004728 6.6e-07 57.0 55 56.4
C05p63190 Brassica napus HOM05D004225 ORTHO05D004728 8.6e-07 56.6 56 53.6
Gohir.D13G168000 Gossypium hirsutum HOM05D004225 ORTHO05D004728 8.6e-07 56.6 30 80.0
MSTRG.5924 Avicennia marina HOM05D004225 ORTHO05D004728 1.1e-06 56.2 55 52.7
Cc06_g07240 Coffea canephora HOM05D004225 ORTHO05D004728 1.1e-06 56.2 56 57.1
SEGI_41481 Sequoiadendron giganteum HOM05D004225 ORTHO05D004728 1.1e-06 56.2 57 49.1
Sopen01g020500 Solanum pennellii HOM05D004225 ORTHO05D004728 1.1e-06 56.2 57 56.1
CAN.G170.116 Capsicum annuum HOM05D004225 ORTHO05D004728 1.5e-06 55.8 57 57.9
Os07g0165200 Oryza sativa ssp. japonica HOM05D004225 ORTHO05D004728 1.5e-06 55.8 55 54.5
Hund10817 Selenicereus undatus HOM05D004225 ORTHO05D004728 1.5e-06 55.8 57 54.4
THA.LOC104820785 Tarenaya hassleriana HOM05D004225 ORTHO05D004728 1.5e-06 55.8 70 51.4
BcaC05g30283 Brassica carinata HOM05D004225 ORTHO05D004728 1.9e-06 55.5 58 51.7
Carub.0003s0296 Capsella rubella HOM05D004225 ORTHO05D004728 1.9e-06 55.5 69 47.8
SalBow3G0054 Salvia bowleyana HOM05D004225 ORTHO05D004728 1.9e-06 55.5 57 50.9
AT3G03790 Arabidopsis thaliana HOM05D004225 ORTHO05D004728 2.5e-06 55.1 69 46.4
HanXRQChr14g0453121 Helianthus annuus HOM05D004225 ORTHO05D004728 2.5e-06 55.1 55 56.4
Sp3g02770 Schrenkiella parvula HOM05D004225 ORTHO05D004728 2.5e-06 55.1 55 56.4
AL3G13620 Arabidopsis lyrata HOM05D004225 ORTHO05D004728 3.3e-06 54.7 69 44.9
BcaC05g30250 Brassica carinata HOM05D004225 ORTHO05D004728 3.3e-06 54.7 55 52.7
A05p43600 Brassica napus HOM05D004225 ORTHO05D004728 3.3e-06 54.7 55 52.7
BraA05t23099Z Brassica rapa HOM05D004225 ORTHO05D004728 3.3e-06 54.7 55 52.7
Thhalv10019953m.g Eutrema salsugineum HOM05D004225 ORTHO05D004728 3.3e-06 54.7 55 54.5
Aa31LG5G14340 Aethionema arabicum HOM05D004225 ORTHO05D004728 4.2e-06 54.3 69 44.9
SMO367G1027 Selaginella moellendorffii HOM05D004225 ORTHO05D004728 4.2e-06 54.3 57 45.6
Solyc01g056570.3 Solanum lycopersicum HOM05D004225 ORTHO05D004728 4.2e-06 54.3 57 54.4
CDE10G0988 Ceratophyllum demersum HOM05D004225 ORTHO05D004728 5.5e-06 53.9 57 47.4


User provided reference genes

Program Settings