Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G18356 Trifolium pratense HOM05D006045 ORTHO05D007678 2.5e-153 545.4 282 100.0
Medtr7g062630 Medicago truncatula HOM05D006045 ORTHO05D007678 1.1e-135 486.9 282 86.5
Psat3g136040 Pisum sativum HOM05D006045 ORTHO05D007678 2.2e-133 479.2 282 85.5
Ca_07336_v3 Cicer arietinum L. HOM05D006045 ORTHO05D007678 1.8e-130 469.5 281 84.3
Lj3g0020199 Lotus japonicus HOM05D006045 ORTHO05D007678 8.2e-112 407.5 282 71.3
Lj1g0013519 Lotus japonicus HOM05D006045 ORTHO05D007678 3.8e-109 398.7 282 69.9
Medtr6g445490 Medicago truncatula HOM05D006045 ORTHO05D007678 1.7e-101 373.2 326 63.2
Lalb_Chr03g0042401 Lupinus albus HOM05D006045 ORTHO05D007678 7.4e-97 357.8 283 63.6
arahy.Tifrunner.gnm1.ann1.FBGI2B Arachis hypogaea HOM05D006045 ORTHO05D007678 2.2e-93 346.3 286 62.9
arahy.Tifrunner.gnm1.ann1.H3QXFP Arachis hypogaea HOM05D006045 ORTHO05D007678 6.5e-93 344.7 286 62.9
Glyma.18G185200 Glycine max HOM05D006045 ORTHO05D007678 1.2e-83 313.9 291 56.7
VMungo1383G2703 Vigna mungo HOM05D006045 ORTHO05D007678 4.0e-74 282.3 272 53.7
MD12G1145400 Malus domestica HOM05D006045 ORTHO05D007678 2.2e-72 276.6 285 52.6
MD04G1132700 Malus domestica HOM05D006045 ORTHO05D007678 2.9e-72 276.2 285 53.7
QL07p030118 Quercus lobata HOM05D006045 ORTHO05D007678 1.8e-71 273.5 287 52.6
PGR004G1833 Punica granatum HOM05D006045 ORTHO05D007678 2.4e-71 273.1 285 53.7
Phvul.008G118100 Phaseolus vulgaris HOM05D006045 ORTHO05D007678 3.2e-71 272.7 263 53.2
QL07p030894 Quercus lobata HOM05D006045 ORTHO05D007678 3.9e-69 265.8 286 52.4
Haze_20828 Corylus avellana HOM05D006045 ORTHO05D007678 1.5e-68 263.8 287 50.9
Nn2g11183 Nelumbo nucifera HOM05D006045 ORTHO05D007678 9.5e-68 261.2 287 50.5
Sed0026133 Sechium edule HOM05D006045 ORTHO05D007678 1.4e-66 257.3 286 49.0
TAR623G1560 Trochodendron aralioides HOM05D006045 ORTHO05D007678 2.3e-66 256.5 288 51.0
Ciclev10011734m.g Citrus clementina HOM05D006045 ORTHO05D007678 4.0e-66 255.8 286 50.3
CANSAT35G0136 Cannabis sativa HOM05D006045 ORTHO05D007678 6.8e-66 255.0 287 50.2
Cfa017339 Carpinus fangiana HOM05D006045 ORTHO05D007678 1.2e-65 254.2 287 48.8
Prupe.6G259100 Prunus persica HOM05D006045 ORTHO05D007678 1.2e-65 254.2 287 51.9
Eucgr.K03104 Eucalyptus grandis HOM05D006045 ORTHO05D007678 2.6e-65 253.1 293 50.9
GSVIVG01034130001 Vitis vinifera HOM05D006045 ORTHO05D007678 7.5e-65 251.5 288 49.0
AUR62034450 Chenopodium quinoa HOM05D006045 ORTHO05D007678 9.8e-65 251.1 288 48.3
Thecc.05G035700 Theobroma cacao HOM05D006045 ORTHO05D007678 1.7e-64 250.4 287 49.5
Potri.002G091400 Populus trichocarpa HOM05D006045 ORTHO05D007678 4.9e-64 248.8 287 48.1
Duzib106G0862 Durio zibethinus HOM05D006045 ORTHO05D007678 6.4e-64 248.4 286 48.3
CiPaw.09G195700 Carya illinoinensis HOM05D006045 ORTHO05D007678 4.1e-63 245.7 287 47.7
AUR62018119 Chenopodium quinoa HOM05D006045 ORTHO05D007678 5.4e-63 245.4 288 47.9
DCAR_028758 Daucus carota HOM05D006045 ORTHO05D007678 9.2e-63 244.6 288 49.0
PGSC0003DMG400008825 Solanum tuberosum HOM05D006045 ORTHO05D007678 9.2e-63 244.6 287 48.4
Gohir.A04G065300 Gossypium hirsutum HOM05D006045 ORTHO05D007678 1.2e-62 244.2 287 48.4
Gorai.009G406000 Gossypium raimondii HOM05D006045 ORTHO05D007678 2.0e-62 243.4 287 48.4
Manes.09G092411 Manihot esculenta HOM05D006045 ORTHO05D007678 2.0e-62 243.4 287 47.4
MELO3C009242.2 Cucumis melo HOM05D006045 ORTHO05D007678 2.7e-62 243.0 286 47.2
FvH4_6g13250 Fragaria vesca HOM05D006045 ORTHO05D007678 6.0e-62 241.9 294 48.3
Nitab4.5_0000705g0060 Nicotiana tabacum HOM05D006045 ORTHO05D007678 6.0e-62 241.9 287 48.4
Solyc09g011020.4 Solanum lycopersicum HOM05D006045 ORTHO05D007678 7.8e-62 241.5 287 48.4
Lj3A965G74 Lonicera japonica HOM05D006045 ORTHO05D007678 1.7e-61 240.4 288 48.6
Nitab4.5_0003394g0010 Nicotiana tabacum HOM05D006045 ORTHO05D007678 1.7e-61 240.4 287 48.4
Gohir.D04G102700 Gossypium hirsutum HOM05D006045 ORTHO05D007678 3.0e-61 239.6 287 48.1
Sopen09g005740 Solanum pennellii HOM05D006045 ORTHO05D007678 3.0e-61 239.6 287 48.4
Hund15247 Selenicereus undatus HOM05D006045 ORTHO05D007678 1.5e-60 237.3 288 46.9
FAN02G2147 Fragaria x ananassa HOM05D006045 ORTHO05D007678 2.5e-60 236.5 294 47.3
EL10Ac2g03023 Beta vulgaris HOM05D006045 ORTHO05D007678 5.6e-60 235.3 288 46.9
CAN.G597.3 Capsicum annuum HOM05D006045 ORTHO05D007678 7.3e-60 235.0 287 47.7
CSS0032526 Camellia sinensis var. sinensis HOM05D006045 ORTHO05D007678 1.2e-59 234.2 289 47.1
TWI77G0138 Tripterygium wilfordii HOM05D006045 ORTHO05D007678 1.2e-59 234.2 288 46.2
FAN14G1932 Fragaria x ananassa HOM05D006045 ORTHO05D007678 2.1e-59 233.4 305 46.6
CsaV3_3G034720 Cucumis sativus L. HOM05D006045 ORTHO05D007678 6.2e-59 231.9 286 45.8
Oeu010102.1 Olea europaea HOM05D006045 ORTHO05D007678 1.8e-58 230.3 288 46.5
RcHm_v2.0_Chr3g0466081 Rosa chinensis HOM05D006045 ORTHO05D007678 1.8e-58 230.3 299 46.2
THA.LOC104816254 Tarenaya hassleriana HOM05D006045 ORTHO05D007678 1.8e-58 230.3 286 46.5
Lsat_1_v5_gn_5_154000 Lactuca sativa HOM05D006045 ORTHO05D007678 4.0e-58 229.2 284 47.9
Peaxi162Scf00527g00742 Petunia axillaris HOM05D006045 ORTHO05D007678 5.2e-58 228.8 287 47.0
HanXRQChr13g0406931 Helianthus annuus HOM05D006045 ORTHO05D007678 8.9e-58 228.0 284 47.5
BolC9t60170H Brassica oleracea HOM05D006045 ORTHO05D007678 7.5e-57 224.9 282 45.4
MBI14_g08020_MAGBIO Magnolia biondii HOM05D006045 ORTHO05D007678 7.5e-57 224.9 290 45.2
Sabra02G0072200 Salix brachista HOM05D006045 ORTHO05D007678 1.3e-56 224.2 286 45.1
ECA248G0328 Erigeron canadensis HOM05D006045 ORTHO05D007678 2.9e-56 223.0 287 47.0
A03p00550 Brassica napus HOM05D006045 ORTHO05D007678 3.7e-56 222.6 283 45.6
BraA03t09445Z Brassica rapa HOM05D006045 ORTHO05D007678 3.7e-56 222.6 283 45.6
BraA10t45376Z Brassica rapa HOM05D006045 ORTHO05D007678 6.4e-56 221.9 282 45.0
BcaB01g06214 Brassica carinata HOM05D006045 ORTHO05D007678 1.1e-55 221.1 282 45.4
C09p74360 Brassica napus HOM05D006045 ORTHO05D007678 2.4e-55 219.9 282 45.0
Carub.0006s0097 Capsella rubella HOM05D006045 ORTHO05D007678 3.2e-55 219.5 282 45.7
AT5G02130 Arabidopsis thaliana HOM05D006045 ORTHO05D007678 7.1e-55 218.4 282 45.0
Sp6g40310 Schrenkiella parvula HOM05D006045 ORTHO05D007678 2.1e-54 216.9 282 44.0
AL6G11360 Arabidopsis lyrata HOM05D006045 ORTHO05D007678 2.7e-54 216.5 282 45.4
PSO339G1759 Papaver somniferum HOM05D006045 ORTHO05D007678 4.6e-54 215.7 286 45.1
Cc06_g02350 Coffea canephora HOM05D006045 ORTHO05D007678 6.0e-54 215.3 298 43.3
CARHR211230 Cardamine hirsuta HOM05D006045 ORTHO05D007678 3.9e-53 212.6 282 45.0
Aqoxy1G00880 Aquilegia oxysepala HOM05D006045 ORTHO05D007678 5.1e-53 212.2 289 45.7
Migut.J00307 Erythranthe guttata HOM05D006045 ORTHO05D007678 1.1e-52 211.1 288 44.8
ATR0559G357 Amborella trichopoda HOM05D006045 ORTHO05D007678 2.5e-52 209.9 288 42.0
A10p33460 Brassica napus HOM05D006045 ORTHO05D007678 5.6e-52 208.8 312 41.3
Thhalv10013663m.g Eutrema salsugineum HOM05D006045 ORTHO05D007678 5.6e-52 208.8 282 44.3
SalBow1G6939 Salvia bowleyana HOM05D006045 ORTHO05D007678 5.6e-52 208.8 288 44.4
MSTRG.19073 Avicennia marina HOM05D006045 ORTHO05D007678 1.2e-51 207.6 288 44.1
Aa31LG1G22600 Aethionema arabicum HOM05D006045 ORTHO05D007678 6.2e-51 205.3 290 43.8
Rhsim04G0158800 Rhododendron simsii HOM05D006045 ORTHO05D007678 6.2e-51 205.3 301 42.5
SHI12713 Sapria himalayana HOM05D006045 ORTHO05D007678 1.4e-50 204.1 300 43.3
vmacro08642 Vaccinium macrocarpon HOM05D006045 ORTHO05D007678 2.3e-50 203.4 291 42.6
CDE06G1975 Ceratophyllum demersum HOM05D006045 ORTHO05D007678 6.8e-50 201.8 284 42.3
ClCG10G021320 Citrullus lanatus HOM05D006045 ORTHO05D007678 1.3e-48 197.6 290 42.1
SGA_v2.0_scaffold126G33761 Striga asiatica HOM05D006045 ORTHO05D007678 5.4e-47 192.2 290 41.7
Sc22g0004440 Simmondsia chinensis HOM05D006045 ORTHO05D007678 4.3e-44 182.6 216 47.7
SEGI_25878 Sequoiadendron giganteum HOM05D006045 ORTHO05D007678 8.9e-42 174.9 291 40.2
C03p00810 Brassica napus HOM05D006045 ORTHO05D007678 6.4e-40 168.7 233 43.3
BcaB01g06067 Brassica carinata HOM05D006045 ORTHO05D007678 8.7e-37 158.3 282 37.9
PSO063G1044 Papaver somniferum HOM05D006045 ORTHO05D007678 2.2e-32 143.7 190 43.7
Os05g0457700 Oryza sativa ssp. japonica HOM05D006045 ORTHO05D007678 6.4e-32 142.1 247 39.3
Atru.chr8.2013 Acer truncatum HOM05D006045 ORTHO05D007678 2.5e-28 130.2 172 45.3
Rhsim04G0160900 Rhododendron simsii HOM05D006045 ORTHO05D007678 3.6e-27 126.3 241 35.7
SMO361G0160 Selaginella moellendorffii HOM05D006045 ORTHO05D007678 9.9e-25 118.2 267 33.7
SMO361G0306 Selaginella moellendorffii HOM05D006045 ORTHO05D007678 1.7e-24 117.5 267 33.0
CiPaw.09G197100 Carya illinoinensis HOM05D006045 ORTHO05D007678 3.0e-21 106.7 122 45.9
Pp3c17_13640 Physcomitrium patens HOM05D006045 ORTHO05D007678 2.5e-20 103.6 251 31.5
Medtr2g093870 Medicago truncatula HOM05D006045 ORTHO05D007678 7.4e-20 102.1 88 62.5
HPP92_014298 Vanilla planifolia HOM05D006045 ORTHO05D007678 4.8e-19 99.4 156 41.0
FAN05G2873 Fragaria x ananassa HOM05D006045 ORTHO05D007678 6.2e-19 99.0 105 48.6
Cpa.g.sc169.5 Carica papaya HOM05D006045 ORTHO05D007678 3.4e-17 93.2 119 47.1
PSO339G4427 Papaver somniferum HOM05D006045 ORTHO05D007678 1.3e-16 91.3 165 35.8
Gohir.A04G065314 Gossypium hirsutum HOM05D006045 ORTHO05D007678 1.1e-15 88.2 77 57.1
Mapoly0002s0152 Marchantia polymorpha HOM05D006045 ORTHO05D007678 5.5e-15 85.9 259 29.7
Medtr4g078800 Medicago truncatula HOM05D006045 ORTHO05D007678 3.5e-14 83.2 155 36.1
MD07G1261700 Malus domestica HOM05D006045 ORTHO05D007678 1.8e-13 80.9 69 58.0
CBR_g8766 Chara braunii HOM05D006045 ORTHO05D007678 3.9e-13 79.7 335 26.0
Zm00001eb351230 Zea mays HOM05D006045 ORTHO05D007678 1.5e-12 77.8 200 31.0
Hma1.2p1_0028F.1_g017940 Hydrangea macrophylla HOM05D006045 ORTHO05D007678 7.4e-12 75.5 73 50.7
Glyma.10G191650 Glycine max HOM05D006045 ORTHO05D007678 2.4e-10 70.5 89 47.2
Glyma.07G135200 Glycine max HOM05D006045 ORTHO05D007678 1.2e-09 68.2 54 61.1
HPP92_014299 Vanilla planifolia HOM05D006045 ORTHO05D007678 1.0e-08 65.1 99 41.4
unitig_21.g21014 Utricularia gibba HOM05D006045 ORTHO05D007678 2.7e-06 57.0 69 46.4
Lsat_1_v5_gn_1_108300 Lactuca sativa HOM05D000747 ORTHO05D015226 3.5e-06 56.6 58 44.8


User provided reference genes

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