Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G18344 Trifolium pratense HOM05D007499 ORTHO05D009491 8.1e-194 680.2 348 100.0
TPR.G15524 Trifolium pratense HOM05D007499 ORTHO05D009491 2.4e-76 290.0 262 55.3
TPR.G16919 Trifolium pratense HOM05D000353 ORTHO05D009491 5.1e-63 245.7 142 85.9
TPR.G14129 Trifolium pratense HOM05D007499 ORTHO05D009491 4.3e-62 242.7 261 48.3
TPR.G27579 Trifolium pratense HOM05D007499 ORTHO05D009491 8.1e-61 238.4 249 46.6
TPR.G16855 Trifolium pratense HOM05D007499 ORTHO05D009491 1.4e-60 237.7 258 45.3
TPR.G26497 Trifolium pratense HOM05D007499 ORTHO05D009491 4.5e-51 206.1 243 42.0
Medtr8g062030 Medicago truncatula HOM05D000353 ORTHO05D000174 3.4e-43 179.9 238 39.1
TPR.G39019 Trifolium pratense HOM05D007499 ORTHO05D009491 3.8e-42 176.4 210 42.9
Medtr5g078250 Medicago truncatula HOM05D000353 ORTHO05D000174 7.2e-41 172.2 218 39.9
TPR.G17763 Trifolium pratense HOM05D007499 ORTHO05D009491 2.1e-40 170.6 256 37.1
TPR.G38513 Trifolium pratense HOM05D007499 ORTHO05D009491 1.9e-38 164.1 242 37.6
TPR.G14905 Trifolium pratense HOM05D007499 ORTHO05D009491 5.7e-38 162.5 212 39.6
TPR.G8670 Trifolium pratense HOM05D007499 ORTHO05D009491 2.6e-35 153.7 275 33.5
TPR.G8849 Trifolium pratense HOM05D007499 ORTHO05D009491 5.9e-35 152.5 210 38.1
Lj4g0000768 Lotus japonicus HOM05D007499 ORTHO05D000174 8.5e-34 148.7 213 35.2
TPR.G38734 Trifolium pratense HOM05D027356 ORTHO05D009491 1.9e-33 147.5 206 36.4
Medtr1g075850 Medicago truncatula HOM05D000353 ORTHO05D000174 2.5e-33 147.1 263 33.1
TPR.G27599 Trifolium pratense HOM05D007499 ORTHO05D009491 2.5e-33 147.1 206 36.9
LjContig00141g0027033 Lotus japonicus HOM05D007499 ORTHO05D000174 2.7e-32 143.7 229 34.9
Lj5g0012270 Lotus japonicus HOM05D007499 ORTHO05D000174 2.3e-31 140.6 207 33.3
TPR.G19260 Trifolium pratense HOM05D007499 ORTHO05D009491 3.9e-31 139.8 163 45.4
Lj6g0015228 Lotus japonicus HOM05D007499 ORTHO05D000174 2.0e-30 137.5 223 31.8
Medtr3g081610 Medicago truncatula HOM05D007499 ORTHO05D009491 2.6e-30 137.1 233 32.2
TPR.G39727 Trifolium pratense HOM05D028938 ORTHO05D009491 3.3e-30 136.7 261 31.8
Medtr4g046077 Medicago truncatula HOM05D007499 ORTHO05D000174 3.7e-29 133.3 273 31.1
TPR.G16048 Trifolium pratense HOM05D001993 ORTHO05D004040 4.8e-29 132.9 219 31.5
Lj3g0013581 Lotus japonicus HOM05D007499 ORTHO05D000174 6.3e-29 132.5 193 34.2
TPR.G14684 Trifolium pratense HOM05D007499 ORTHO05D000174 6.3e-29 132.5 239 31.0
TPR.G39726 Trifolium pratense HOM05D007499 ORTHO05D009491 2.4e-28 130.6 223 30.9
Lj1g0016702 Lotus japonicus HOM05D007499 ORTHO05D000174 1.7e-26 124.4 233 29.2
TPR.G40188 Trifolium pratense HOM05D007499 ORTHO05D009491 2.9e-26 123.6 92 52.2
Medtr4g134870 Medicago truncatula HOM05D002878 ORTHO05D003649 1.8e-23 114.4 196 32.7
Medtr6g445520 Medicago truncatula HOM05D000353 ORTHO05D000174 3.9e-23 113.2 224 28.6
Phvul.005G096800 Phaseolus vulgaris HOM05D000353 ORTHO05D000174 5.2e-23 112.8 210 30.5
Phvul.008G122133 Phaseolus vulgaris HOM05D011527 ORTHO05D009491 2.0e-22 110.9 209 31.1
Medtr2g048560 Medicago truncatula HOM05D000353 ORTHO05D000174 3.3e-22 110.2 245 29.0
TPR.G17919 Trifolium pratense HOM05D011527 ORTHO05D009491 4.4e-22 109.8 210 30.5
arahy.Tifrunner.gnm1.ann1.CPRZ31 Arachis hypogaea HOM05D000353 ORTHO05D000174 1.3e-21 108.2 211 31.8
arahy.Tifrunner.gnm1.ann1.AKH4BK Arachis hypogaea HOM05D000353 ORTHO05D000174 2.8e-21 107.1 211 31.8
arahy.Tifrunner.gnm1.ann1.IYP2GG Arachis hypogaea HOM05D000353 ORTHO05D000174 2.8e-21 107.1 211 31.8
arahy.Tifrunner.gnm1.ann1.J9NJUF Arachis hypogaea HOM05D000353 ORTHO05D000174 2.8e-21 107.1 211 31.8
Lj6g0015688 Lotus japonicus HOM05D007499 ORTHO05D000174 2.8e-21 107.1 217 29.0
TPR.G38721 Trifolium pratense HOM05D000096 ORTHO05D000045 2.8e-21 107.1 250 29.2
arahy.Tifrunner.gnm1.ann1.Y6YSHD Arachis hypogaea HOM05D000353 ORTHO05D000174 4.8e-21 106.3 211 31.8
Phvul.006G191400 Phaseolus vulgaris HOM05D011527 ORTHO05D009491 4.8e-21 106.3 209 31.6
Phvul.001G105000 Phaseolus vulgaris HOM05D000353 ORTHO05D009491 6.3e-21 105.9 210 30.5
TPR.G34472 Trifolium pratense HOM05D011524 ORTHO05D009491 6.3e-21 105.9 284 26.8
arahy.Tifrunner.gnm1.ann1.LSFF47 Arachis hypogaea HOM05D000353 ORTHO05D000174 1.1e-20 105.1 211 31.3
Phvul.L003637 Phaseolus vulgaris HOM05D000353 ORTHO05D009491 1.1e-20 105.1 200 31.5
TPR.G35040 Trifolium pratense HOM05D011524 ORTHO05D009491 1.4e-20 104.8 195 31.3
Medtr0042s0170 Medicago truncatula HOM05D007499 ORTHO05D009491 2.4e-20 104.0 149 34.9
Medtr6g051890 Medicago truncatula HOM05D000353 ORTHO05D000174 3.1e-20 103.6 164 34.1
Medtr2g008650 Medicago truncatula HOM05D000353 ORTHO05D000174 4.1e-20 103.2 209 29.2
Medtr8g479260 Medicago truncatula HOM05D000353 ORTHO05D000174 4.1e-20 103.2 209 29.2
TPR.G40139 Trifolium pratense HOM05D000096 ORTHO05D000045 5.3e-20 102.8 210 29.0
LjContig00155g0001945 Lotus japonicus HOM05D000353 ORTHO05D000174 1.2e-19 101.7 210 30.0
LjContig00357g0026360 Lotus japonicus HOM05D007499 ORTHO05D009491 1.2e-19 101.7 149 34.9
Medtr3g056270 Medicago truncatula HOM05D000353 ORTHO05D000174 1.2e-19 101.7 228 30.3
Medtr4g036240 Medicago truncatula HOM05D000353 ORTHO05D000174 1.6e-19 101.3 228 30.3
TPR.G36881 Trifolium pratense HOM05D011524 ORTHO05D009491 2.0e-19 100.9 195 30.8
Lj1g0003435 Lotus japonicus HOM05D007499 ORTHO05D000174 3.5e-19 100.1 147 34.7
LjContig00081g0005726 Lotus japonicus HOM05D007499 ORTHO05D000174 3.5e-19 100.1 147 34.7
TPR.G34060 Trifolium pratense HOM05D011527 ORTHO05D009491 3.5e-19 100.1 209 28.7
LjContig00312_ERROPOS870357g0000618 Lotus japonicus HOM05D007499 ORTHO05D010522 4.5e-19 99.8 230 26.5
TPR.G26714 Trifolium pratense HOM05D011524 ORTHO05D009491 4.5e-19 99.8 210 30.5
Phvul.001G109800 Phaseolus vulgaris HOM05D000353 ORTHO05D000174 5.0e-18 96.3 253 27.7
TPR.G20476 Trifolium pratense HOM05D011524 ORTHO05D009491 6.5e-18 95.9 195 30.8
TPR.G19823 Trifolium pratense HOM05D011527 ORTHO05D009491 8.5e-18 95.5 210 29.0
LjContig00312_ERROPOS870357g0011073 Lotus japonicus HOM05D007499 ORTHO05D010522 1.1e-17 95.1 196 29.1
Lj3g0013474 Lotus japonicus HOM05D000353 ORTHO05D000174 3.2e-17 93.6 191 29.8
Lj1g0004030 Lotus japonicus HOM05D000353 ORTHO05D000174 4.7e-16 89.7 174 29.9
Phvul.006G016100 Phaseolus vulgaris HOM05D000353 ORTHO05D000174 6.1e-16 89.4 186 28.0
Lj5g0003409 Lotus japonicus HOM05D007499 ORTHO05D010522 1.0e-15 88.6 209 29.2
Lj6g0004966 Lotus japonicus HOM05D011527 ORTHO05D009491 2.3e-15 87.4 199 29.1
Phvul.007G129300 Phaseolus vulgaris HOM05D000353 ORTHO05D009491 8.8e-15 85.5 149 32.2
TPR.G7855 Trifolium pratense HOM05D000096 ORTHO05D000045 1.5e-14 84.7 180 26.1
Lj5g0027118 Lotus japonicus HOM05D007499 ORTHO05D010522 2.0e-14 84.3 204 27.5
TPR.G35851 Trifolium pratense HOM05D000353 ORTHO05D009491 2.6e-14 84.0 51 78.4
arahy.Tifrunner.gnm1.ann1.CT1CGZ Arachis hypogaea HOM05D007499 ORTHO05D009491 3.3e-14 83.6 195 26.7
TPR.G9452 Trifolium pratense HOM05D000353 ORTHO05D009491 4.4e-14 83.2 103 44.7
Medtr1g050500 Medicago truncatula HOM05D036319 ORTHO05D000174 5.7e-14 82.8 226 26.5
arahy.Tifrunner.gnm1.ann1.GFA6QK Arachis hypogaea HOM05D007499 ORTHO05D009491 1.3e-13 81.6 195 26.7
Lj5g0011370 Lotus japonicus HOM05D007499 ORTHO05D010522 1.3e-13 81.6 198 28.3
Lj4g0008637 Lotus japonicus HOM05D007499 ORTHO05D010522 1.7e-13 81.3 188 26.6
LjContig00564g0005268 Lotus japonicus HOM05D007499 ORTHO05D010522 1.7e-13 81.3 220 27.7
Medtr2g048550 Medicago truncatula HOM05D000353 ORTHO05D000174 1.7e-13 81.3 224 26.3
TPR.G30051 Trifolium pratense HOM05D000023 ORTHO05D009491 1.7e-13 81.3 184 27.7
TPR.G36248 Trifolium pratense HOM05D000353 ORTHO05D412774 4.8e-13 79.7 40 95.0
Lj1g0005428 Lotus japonicus HOM05D007499 ORTHO05D010522 6.3e-13 79.3 153 27.5
Lj1g0018428 Lotus japonicus HOM05D007499 ORTHO05D010522 6.3e-13 79.3 153 27.5
Lj2g0011736 Lotus japonicus HOM05D007499 ORTHO05D010522 6.3e-13 79.3 153 27.5
Lj3g0013394 Lotus japonicus HOM05D007499 ORTHO05D010522 6.3e-13 79.3 153 27.5
TPR.G9150 Trifolium pratense HOM05D007499 ORTHO05D000174 8.2e-13 79.0 118 31.4
Lj1g0024942 Lotus japonicus HOM05D007499 ORTHO05D010522 1.8e-12 77.8 206 23.8
Lj2g0019243 Lotus japonicus HOM05D007499 ORTHO05D010522 1.8e-12 77.8 204 24.0
Lj6g0021814 Lotus japonicus HOM05D007499 ORTHO05D010522 2.4e-12 77.4 198 25.8
Lj1g0019213 Lotus japonicus HOM05D007499 ORTHO05D010522 4.1e-12 76.6 197 26.9
Lj3g0016345 Lotus japonicus HOM05D000353 ORTHO05D000174 1.6e-11 74.7 133 30.1
Lj6g0022193 Lotus japonicus HOM05D010643 ORTHO05D013332 2.0e-11 74.3 159 32.7
arahy.Tifrunner.gnm1.ann1.H3FPA3 Arachis hypogaea HOM05D010000 ORTHO05D009491 2.7e-11 73.9 173 29.5
Phvul.007G155600 Phaseolus vulgaris HOM05D000353 ORTHO05D009491 7.7e-11 72.4 184 27.7
TPR.G39470 Trifolium pratense HOM05D007499 ORTHO05D009491 1.0e-10 72.0 106 32.1
TPR.G14685 Trifolium pratense HOM05D028938 ORTHO05D000174 5.0e-10 69.7 203 24.6
Medtr4g040040 Medicago truncatula HOM05D011527 ORTHO05D000174 1.5e-09 68.2 170 24.7
Phvul.003G117700 Phaseolus vulgaris HOM05D011527 ORTHO05D009491 1.5e-09 68.2 161 26.7
LjContig00571g0009576 Lotus japonicus HOM05D020600 ORTHO05D010522 2.5e-09 67.4 179 26.8
arahy.Tifrunner.gnm1.ann1.HMM5RD Arachis hypogaea HOM05D000353 ORTHO05D000174 3.2e-09 67.0 86 37.2
arahy.Tifrunner.gnm1.ann1.HP5C5B Arachis hypogaea HOM05D012160 ORTHO05D009491 3.2e-09 67.0 74 40.5
arahy.Tifrunner.gnm1.ann1.NFD50Z Arachis hypogaea HOM05D000353 ORTHO05D000174 4.2e-09 66.6 86 37.2
LjContig00571g0020559 Lotus japonicus HOM05D007499 ORTHO05D010522 4.2e-09 66.6 155 25.8
Phvul.005G095200 Phaseolus vulgaris HOM05D000353 ORTHO05D000174 1.6e-08 64.7 186 26.9
arahy.Tifrunner.gnm1.ann1.P2WC32 Arachis hypogaea HOM05D000353 ORTHO05D000174 2.1e-08 64.3 86 37.2
TPR.G16657 Trifolium pratense HOM05D011524 ORTHO05D009491 2.1e-08 64.3 84 34.5
Lj2g0011029 Lotus japonicus HOM05D000353 ORTHO05D000174 3.6e-08 63.5 74 39.2
TPR.G14138 Trifolium pratense HOM05D000096 ORTHO05D000045 3.6e-08 63.5 78 38.5
Lj4g0003601 Lotus japonicus HOM05D000353 ORTHO05D000174 8.0e-08 62.4 189 26.5
TPR.G16827 Trifolium pratense HOM05D000096 ORTHO05D000045 8.0e-08 62.4 64 39.1
TPR.G8666 Trifolium pratense HOM05D000096 ORTHO05D000045 8.0e-08 62.4 68 36.8
Lj4g0014113 Lotus japonicus HOM05D007499 ORTHO05D010522 1.0e-07 62.0 176 24.4
TPR.G10066 Trifolium pratense HOM05D011527 ORTHO05D009491 1.0e-07 62.0 99 31.3
arahy.Tifrunner.gnm1.ann1.B2SX4B Arachis hypogaea HOM05D000353 ORTHO05D000174 1.4e-07 61.6 74 35.1
Lj6g0015595 Lotus japonicus HOM05D007499 ORTHO05D010522 1.4e-07 61.6 189 24.3
SGA_v2.0_scaffold53G19410 Striga asiatica HOM05D002090 ORTHO05D000174 1.8e-07 61.2 191 26.2
arahy.Tifrunner.gnm1.ann1.W2LWD3 Arachis hypogaea HOM05D008664 ORTHO05D000174 4.0e-07 60.1 203 23.2
arahy.Tifrunner.gnm1.ann1.DG0J8D Arachis hypogaea HOM05D001440 ORTHO05D009491 5.2e-07 59.7 66 37.9
arahy.Tifrunner.gnm1.ann1.7L6ESV Arachis hypogaea HOM05D008664 ORTHO05D000174 8.8e-07 58.9 203 23.2
arahy.Tifrunner.gnm1.ann1.7R55CH Arachis hypogaea HOM05D008664 ORTHO05D000174 8.8e-07 58.9 203 23.2
TPR.G15510 Trifolium pratense HOM05D030652 ORTHO05D000174 8.8e-07 58.9 70 38.6
arahy.Tifrunner.gnm1.ann1.KRT5WL Arachis hypogaea HOM05D003769 ORTHO05D004521 1.2e-06 58.5 111 31.5
Medtr6g033945 Medicago truncatula HOM05D040056 ORTHO05D025862 1.2e-06 58.5 48 52.1
arahy.Tifrunner.gnm1.ann1.0VM956 Arachis hypogaea HOM05D008664 ORTHO05D000174 2.0e-06 57.8 203 23.2
SGA_v2.0_scaffold106G30698 Striga asiatica HOM05D000353 ORTHO05D000174 2.0e-06 57.8 187 24.1
arahy.Tifrunner.gnm1.ann1.39QWAJ Arachis hypogaea HOM05D008664 ORTHO05D000174 2.6e-06 57.4 173 24.3
Lj1g0027259 Lotus japonicus HOM05D020600 ORTHO05D010522 2.6e-06 57.4 122 27.9
TPR.G18345 Trifolium pratense HOM05D030652 ORTHO05D009491 3.4e-06 57.0 97 30.9
arahy.Tifrunner.gnm1.ann1.40YIIT Arachis hypogaea HOM05D008664 ORTHO05D000174 4.4e-06 56.6 215 22.8
arahy.Tifrunner.gnm1.ann1.DGVF5A Arachis hypogaea HOM05D003769 ORTHO05D004521 4.4e-06 56.6 66 37.9
Medtr7g110100 Medicago truncatula HOM05D008036 ORTHO05D000174 5.7e-06 56.2 185 23.2
TPR.G18480 Trifolium pratense HOM05D011524 ORTHO05D009491 7.5e-06 55.8 59 37.3
TPR.G18084 Trifolium pratense HOM05D000096 ORTHO05D000045 9.8e-06 55.5 71 36.6


User provided reference genes

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