Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G1832 Trifolium pratense HOM05D006934 ORTHO05D008743 2.0e-305 1051.6 510 100.0
Medtr3g105980 Medicago truncatula HOM05D006934 ORTHO05D008743 5.7e-281 970.3 511 92.2
Psat5g033000 Pisum sativum HOM05D006934 ORTHO05D008743 4.4e-273 944.1 501 90.2
Ca_15778_v3 Cicer arietinum L. HOM05D006934 ORTHO05D008743 5.7e-273 943.7 502 90.6
Lj1g0027414 Lotus japonicus HOM05D006934 ORTHO05D008743 7.1e-255 883.6 502 84.3
Glyma.06G061500 Glycine max HOM05D006934 ORTHO05D008743 4.1e-247 857.8 501 80.8
Phvul.009G087000 Phaseolus vulgaris HOM05D006934 ORTHO05D008743 4.6e-246 854.4 509 79.6
Lalb_Chr23g0268221 Lupinus albus HOM05D006934 ORTHO05D008743 3.3e-244 848.2 505 79.4
VMungo1309G2247 Vigna mungo HOM05D006934 ORTHO05D008743 9.6e-244 846.7 487 81.5
arahy.Tifrunner.gnm1.ann1.XZ9AUI Arachis hypogaea HOM05D006934 ORTHO05D008743 1.6e-243 845.9 489 81.6
Glyma.04G060900 Glycine max HOM05D006934 ORTHO05D008743 4.7e-243 844.3 506 80.0
Haze_21418 Corylus avellana HOM05D006934 ORTHO05D008743 1.7e-232 809.3 503 75.9
Cfa013059 Carpinus fangiana HOM05D006934 ORTHO05D008743 1.1e-231 806.6 492 77.4
GSVIVG01035967001 Vitis vinifera HOM05D006934 ORTHO05D008743 6.0e-230 800.8 507 74.8
Hma1.2p1_0706F.1_g207020 Hydrangea macrophylla HOM05D006934 ORTHO05D008743 1.0e-229 800.0 512 73.4
Dinv11656 Davidia involucrata HOM05D006934 ORTHO05D008743 2.3e-229 798.9 508 73.8
CSS0048576 Camellia sinensis var. sinensis HOM05D006934 ORTHO05D008743 8.7e-229 797.0 504 73.6
CSS0041678 Camellia sinensis var. sinensis HOM05D006934 ORTHO05D008743 1.9e-228 795.8 504 73.4
Rhsim02G0213000 Rhododendron simsii HOM05D006934 ORTHO05D008743 2.5e-228 795.4 503 74.2
Sabra18G0021400 Salix brachista HOM05D006934 ORTHO05D008743 9.6e-228 793.5 501 75.2
Potri.018G018700 Populus trichocarpa HOM05D006934 ORTHO05D008743 1.3e-227 793.1 503 74.2
Ciclev10008002m.g Citrus clementina HOM05D006934 ORTHO05D008743 4.8e-227 791.2 501 74.1
Manes.03G008700 Manihot esculenta HOM05D006934 ORTHO05D008743 1.8e-226 789.3 503 75.0
Atru.chr7.2565 Acer truncatum HOM05D006934 ORTHO05D008743 7.6e-225 783.9 501 73.9
TAR626G1595 Trochodendron aralioides HOM05D006934 ORTHO05D008743 3.8e-224 781.6 506 72.1
Cpa.g.sc127.37 Carica papaya HOM05D006934 ORTHO05D008743 6.4e-224 780.8 506 72.5
CANSAT25G0127 Cannabis sativa HOM05D006934 ORTHO05D008743 4.2e-223 778.1 500 73.2
vmacro11241 Vaccinium macrocarpon HOM05D006934 ORTHO05D008743 1.3e-221 773.1 546 67.6
Prupe.1G393700 Prunus persica HOM05D006934 ORTHO05D008743 1.8e-221 772.7 498 73.3
TWI34G0497 Tripterygium wilfordii HOM05D006934 ORTHO05D008743 1.8e-221 772.7 505 71.3
RcHm_v2.0_Chr6g0299421 Rosa chinensis HOM05D006934 ORTHO05D008743 5.1e-221 771.2 496 73.4
FvH4_2g41120 Fragaria vesca HOM05D006934 ORTHO05D008743 1.5e-220 769.6 500 73.2
MD15G1040400 Malus domestica HOM05D006934 ORTHO05D008743 1.5e-220 769.6 496 73.2
Thecc.09G015800 Theobroma cacao HOM05D006934 ORTHO05D008743 1.9e-220 769.2 497 73.2
Sopen08g022340 Solanum pennellii HOM05D006934 ORTHO05D008743 7.4e-220 767.3 504 71.0
MSTRG.25834 Avicennia marina HOM05D006934 ORTHO05D008743 6.2e-219 764.2 484 74.0
QL02p018881 Quercus lobata HOM05D006934 ORTHO05D008743 8.2e-219 763.8 500 72.6
Aqoxy5G03587 Aquilegia oxysepala HOM05D006934 ORTHO05D008743 4.0e-218 761.5 504 71.4
Actinidia10522 Actinidia chinensis HOM05D006934 ORTHO05D008743 1.2e-217 760.0 506 71.5
Solyc08g068580.4 Solanum lycopersicum HOM05D006934 ORTHO05D008743 1.2e-217 760.0 504 70.2
Duzib168G1051 Durio zibethinus HOM05D006934 ORTHO05D008743 3.4e-217 758.4 504 71.4
HanXRQChr06g0176741 Helianthus annuus HOM05D006934 ORTHO05D008743 5.8e-217 757.7 509 68.4
Migut.A00351 Erythranthe guttata HOM05D006934 ORTHO05D008743 7.6e-217 757.3 485 72.8
FAN27G3133 Fragaria x ananassa HOM05D006934 ORTHO05D008743 7.6e-217 757.3 501 72.3
AUR62024810 Chenopodium quinoa HOM05D006934 ORTHO05D008743 1.3e-216 756.5 501 71.3
Eucgr.C02612 Eucalyptus grandis HOM05D006934 ORTHO05D008743 3.8e-216 755.0 501 70.9
ATR0739G024 Amborella trichopoda HOM05D006934 ORTHO05D008743 4.9e-216 754.6 502 70.5
AUR62032410 Chenopodium quinoa HOM05D006934 ORTHO05D008743 4.9e-216 754.6 501 70.7
Cc08_g06990 Coffea canephora HOM05D006934 ORTHO05D008743 8.4e-216 753.8 485 70.5
COL.COLO4_18949 Corchorus olitorius HOM05D006934 ORTHO05D008743 9.3e-215 750.4 500 70.8
Lsat_1_v5_gn_8_82201 Lactuca sativa HOM05D006934 ORTHO05D008743 9.3e-215 750.4 510 68.2
Nitab4.5_0006202g0030 Nicotiana tabacum HOM05D006934 ORTHO05D008743 2.1e-214 749.2 511 68.3
ECA236G4849 Erigeron canadensis HOM05D006934 ORTHO05D008743 3.5e-214 748.4 483 70.6
MBI15_g19327_MAGBIO Magnolia biondii HOM05D006934 ORTHO05D008743 6.0e-214 747.7 492 70.1
CAN.G21.49 Capsicum annuum HOM05D006934 ORTHO05D008743 7.9e-214 747.3 503 69.6
Gorai.001G038100 Gossypium raimondii HOM05D006934 ORTHO05D008743 8.7e-213 743.8 511 68.5
Gohir.D07G036200 Gossypium hirsutum HOM05D006934 ORTHO05D008743 9.6e-212 740.3 504 69.0
EL10Ac2g02505 Beta vulgaris HOM05D006934 ORTHO05D008743 1.3e-211 740.0 504 70.4
CDE02G1998 Ceratophyllum demersum HOM05D006934 ORTHO05D008743 1.8e-210 736.1 502 67.7
Eucgr.C02525 Eucalyptus grandis HOM05D006934 ORTHO05D008743 5.3e-210 734.6 501 69.1
Eucgr.C02611 Eucalyptus grandis HOM05D006934 ORTHO05D008743 6.9e-210 734.2 501 68.9
PGR044G1250 Punica granatum HOM05D006934 ORTHO05D008743 1.2e-209 733.4 514 68.7
CiPaw.07G230200 Carya illinoinensis HOM05D006934 ORTHO05D008743 3.4e-209 731.9 470 74.7
PSO017G3817 Papaver somniferum HOM05D006934 ORTHO05D008743 1.7e-208 729.6 509 67.8
Sp2g22420 Schrenkiella parvula HOM05D006934 ORTHO05D008743 6.5e-208 727.6 502 68.3
Gorai.010G118800 Gossypium raimondii HOM05D006934 ORTHO05D008743 8.5e-208 727.2 504 68.3
unitig_32.g11664 Utricularia gibba HOM05D006934 ORTHO05D008743 1.4e-207 726.5 485 70.3
Lj7C734G21 Lonicera japonica HOM05D006934 ORTHO05D008743 9.3e-207 723.8 450 74.0
PGSC0003DMG400029048 Solanum tuberosum HOM05D006934 ORTHO05D008743 9.3e-207 723.8 474 70.9
BcaNung03200 Brassica carinata HOM05D006934 ORTHO05D008743 1.2e-206 723.4 499 68.9
Gohir.D06G103800 Gossypium hirsutum HOM05D006934 ORTHO05D008743 6.1e-206 721.1 504 67.9
Hund02990 Selenicereus undatus HOM05D006934 ORTHO05D008743 6.1e-206 721.1 501 68.3
PSO170G6733 Papaver somniferum HOM05D006934 ORTHO05D008743 5.1e-205 718.0 511 66.9
BraA06t26511Z Brassica rapa HOM05D006934 ORTHO05D008743 6.7e-205 717.6 495 68.9
Eucgr.C02526 Eucalyptus grandis HOM05D006934 ORTHO05D008743 1.1e-204 716.8 472 70.8
Aa31LG11G4330 Aethionema arabicum HOM05D006934 ORTHO05D008743 7.4e-204 714.1 498 67.9
BcaNung02296 Brassica carinata HOM05D006934 ORTHO05D008743 1.3e-203 713.4 495 68.1
C07p42720 Brassica napus HOM05D006934 ORTHO05D008743 1.3e-203 713.4 495 68.3
BolC7t44802H Brassica oleracea HOM05D006934 ORTHO05D008743 1.3e-203 713.4 495 68.1
HPP92_004696 Vanilla planifolia HOM05D006934 ORTHO05D008743 3.7e-203 711.8 503 67.6
Sed0006653 Sechium edule HOM05D006934 ORTHO05D008743 6.3e-203 711.1 478 69.2
THA.LOC104799020 Tarenaya hassleriana HOM05D006934 ORTHO05D008743 9.1e-202 707.2 522 65.5
MELO3C016958.2 Cucumis melo HOM05D006934 ORTHO05D008743 1.2e-201 706.8 486 69.3
Os06g0649900 Oryza sativa ssp. japonica HOM05D006934 ORTHO05D008743 1.2e-201 706.8 479 67.6
arahy.Tifrunner.gnm1.ann1.G1SIKM Arachis hypogaea HOM05D006934 ORTHO05D008743 2.6e-201 705.7 489 71.2
CsaV3_4G036540 Cucumis sativus L. HOM05D006934 ORTHO05D008743 1.3e-200 703.4 480 69.2
Ah.12g060980 Amaranthus hybridus HOM05D006934 ORTHO05D008743 3.2e-199 698.7 453 72.4
Aqoxy2G03820 Aquilegia oxysepala HOM05D006934 ORTHO05D008743 5.5e-199 698.0 509 66.2
Nitab4.5_0000406g0060 Nicotiana tabacum HOM05D006934 ORTHO05D008743 6.7e-197 691.0 457 69.4
AL6G36750 Arabidopsis lyrata HOM05D006934 ORTHO05D008743 8.8e-197 690.6 488 67.2
SEGI_09290 Sequoiadendron giganteum HOM05D006934 ORTHO05D008743 8.8e-197 690.6 497 66.2
A06p35860 Brassica napus HOM05D006934 ORTHO05D008743 2.0e-196 689.5 542 63.1
ClCG05G016280 Citrullus lanatus HOM05D006934 ORTHO05D008743 3.3e-196 688.7 506 65.8
Nn2g12390 Nelumbo nucifera HOM05D006934 ORTHO05D008743 7.9e-190 667.5 488 66.0
BcaNung06716 Brassica carinata HOM05D006934 ORTHO05D008743 5.7e-188 661.4 490 65.5
Pp3c3_35450 Physcomitrium patens HOM05D006934 ORTHO05D008743 6.1e-174 614.8 500 58.8
Thhalv10004366m.g Eutrema salsugineum HOM05D006934 ORTHO05D008743 1.2e-158 563.9 379 70.4
CARHR188390 Cardamine hirsuta HOM05D006934 ORTHO05D008743 2.1e-150 536.6 370 68.9
Sc09g0010640 Simmondsia chinensis HOM05D006934 ORTHO05D008743 9.2e-146 521.2 339 72.3
Peaxi162Scf00822g00212 Petunia axillaris HOM05D006934 ORTHO05D008743 4.0e-141 505.8 352 66.5
Nn8g39897 Nelumbo nucifera HOM05D006934 ORTHO05D008743 1.4e-133 480.7 352 64.2
Gohir.A07G032950 Gossypium hirsutum HOM05D006934 ORTHO05D008743 1.6e-118 430.6 307 65.5
Gohir.A06G101800 Gossypium hirsutum HOM05D006934 ORTHO05D008743 1.8e-117 427.2 309 64.1
Eucgr.C02635 Eucalyptus grandis HOM05D006934 ORTHO05D008743 2.1e-113 413.7 499 46.1
Zm00001eb275030 Zea mays HOM05D006934 ORTHO05D008743 1.5e-95 354.4 243 64.2
Zm00001eb334470 Zea mays HOM05D006934 ORTHO05D008743 4.3e-87 326.2 214 65.4
QL02p018870 Quercus lobata HOM05D006934 ORTHO05D008743 6.5e-75 285.8 183 72.7
Gohir.A06G101702 Gossypium hirsutum HOM05D006934 ORTHO05D008743 7.0e-69 265.8 176 72.2
SGA_v2.0_scaffold22G09909 Striga asiatica HOM05D006934 ORTHO05D008743 2.0e-60 237.7 147 73.5
Zm00001eb337170 Zea mays HOM05D006934 ORTHO05D008743 7.5e-55 219.2 148 62.8
Lsat_1_v5_gn_5_171641 Lactuca sativa HOM05D006934 ORTHO05D008743 2.9e-22 110.9 122 54.1
Cfa012861 Carpinus fangiana HOM05D006934 ORTHO05D008743 1.5e-15 88.6 51 74.5
SEGI_28803 Sequoiadendron giganteum HOM05D006934 ORTHO05D008743 2.1e-12 78.2 82 48.8
Lsat_1_v5_gn_2_108800 Lactuca sativa HOM05D006934 ORTHO05D003550 5.1e-11 73.6 79 49.4


User provided reference genes

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